Array 1 15719-14165 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHT010000020.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
15718 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG
15657 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
15596 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG
15535 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
15474 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG
15413 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC
15352 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT
15291 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA
15230 29 100.0 32 ............................. ACACCCCGCTATCTGCGCGGCTTTACGAGATA
15169 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT
15108 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
15047 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA
14986 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA
14925 29 100.0 32 ............................. AATTAATAATATGGAGAGTAAATAACATGAGA
14864 29 100.0 32 ............................. CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
14803 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
14742 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
14681 29 100.0 32 ............................. AACGTTTTAGAAATTGATGCTATTTTGCGAGG
14620 29 100.0 32 ............................. CACTGCCCGCAGTGTCAGCCGTACAGGCGATC
14559 29 100.0 32 ............................. GACTATCGCGGACTGCTGAAATCAACCGGCGA
14498 29 100.0 32 ............................. TTAACGCTCTATAAACCGTCCGTTTAATACTC
14437 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG
14376 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT
14315 29 100.0 32 ............................. AGTTGAGCGTCTACCAGTTGATTCGGGATATT
14254 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
14193 29 96.6 0 ............T................ |
========== ====== ====== ====== ============================= ================================ ==================
26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 41936-41419 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSHT010000020.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
41935 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC
41874 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
41813 29 100.0 32 ............................. GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
41752 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
41691 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG
41630 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA
41569 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC
41508 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA
41447 29 86.2 0 .........G.AC...............A |
========== ====== ====== ====== ============================= ================================ ==================
9 29 96.2 32 GAGTTCCCCACGTCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA
# Questionable array : NO Score: 6.07
# Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG
# Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.28 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//