Array 1 813482-812663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009653.1 Francisella tularensis subsp. novicida strain AL97-2214 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 813481 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [813472] 813410 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [813383] 813202 37 94.6 36 ........C...A........................ TTGCTGTATTGGTATTAATCTACATTTTTTAGATTT 813129 37 100.0 34 ..................................... CCAACTCTTGAATTAAGTGTTGCTGTTGCGGGTT 813058 37 100.0 34 ..................................... ATGTTTACATCTGCTGGAACGATTCGAGGCAACT 812987 37 100.0 36 ..................................... AAAACAAAAAGGTAATGTTTATCGTGTTATTAATCA 812914 37 100.0 34 ..................................... CAGCAGGGTCAGGAGCGAAATTAACTCTATGATT 812843 37 100.0 34 ..................................... CTCCTGCGATAGTGCGAGACGATAACGTAACTGG 812772 37 100.0 36 ..................................... ATCTTTTCTTGATTGTAATAAAGCTCTGTCTATCTT 812699 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 10 37 95.1 50 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : TGATAGTCATGTATATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAAT # Questionable array : NO Score: 4.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.72, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1474257-1475528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009653.1 Francisella tularensis subsp. novicida strain AL97-2214 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1474257 36 86.1 32 ...A.T..T.A........................G ATATTTGAAGCAGCTGCTTATGTTTTGACAAT T,GG [1474267,1474271] 1474328 36 100.0 28 .................................... TAAGGTGTAACACACTACACTTTGCAAG 1474392 36 100.0 30 .................................... ATAACGCAATAAAAAGCCCAACACCCACGC 1474458 36 100.0 29 .................................... GTGTTGAAAGTAGCCAGAGAGCAGATAAA 1474523 36 100.0 28 .................................... TTAAGGAGTATAAAGATGATAAAGCGAC 1474587 36 100.0 32 .................................... ATATTTGAAGCAGCTGCTTATGTTTTGACAAT 1474655 36 100.0 30 .................................... CTTCTAAGTAATAATCGTATTTTCATTATA 1474721 36 100.0 29 .................................... CCCAAATACTTTCGATTTTCTTAAGCACT 1474786 36 100.0 28 .................................... ATTTCTGCTGAAACCTATCTAAAATACA 1474850 36 100.0 29 .................................... TTAGAGGGGTATGTGATGGATATAATTGT 1474915 36 100.0 28 .................................... CATTAGCAACACCAGTCATCACATAAAT 1474979 36 100.0 28 .................................... ATTCTAAATTATTGATATTACTTGAGCC 1475043 36 100.0 28 .................................... CATCTCAAAAACTAGGAATTTCTACAGA 1475107 36 100.0 28 .................................... GCTGTGCTATTGGTTTAATGATCTCTGC 1475171 36 100.0 28 .................................... GGAGATGAAATGAAATACGGCGTAAATT 1475235 36 100.0 29 .................................... ATTTCTGACATAACTAAACAACCATTTTA 1475300 36 100.0 29 .................................... CTCGTACAGATTGCTGGTGATAGTTATAT 1475365 36 100.0 28 .................................... AAAACTCTAGAAGAAGCTAAAGAAAGCC 1475429 36 100.0 28 .................................... TTGCTGGTTACGATATAAGCTCTGACCT 1475493 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 20 36 99.3 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : TAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTATTTATCACCGCAATATATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCAATAAATTCTCAAGTAGTGTTATATTAGCAAATACTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTGGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGTCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //