Array 1 78812-78051 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAT01000341.1 Escherichia coli strain ECOR17 ECOR17_contig_65_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78811 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 78750 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 78689 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 78628 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 78567 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 78506 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 78445 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 78384 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 78323 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 78262 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 78201 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 78140 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 78079 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87929-88934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAT01000066.1 Escherichia coli strain ECOR17 ECOR17_contig_15_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87929 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 87990 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 88051 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 88112 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 88173 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 88234 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 88296 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 88357 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 88418 29 100.0 32 ............................. GGCACAAAAAAACCCGCGCACGGCGGGTTAAT 88479 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 88540 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 88601 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 88662 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 88723 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 88784 29 96.6 32 .T........................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 88845 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 88906 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACGGTGATGCTGCCAACTTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //