Array 1 1115531-1113733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029754.1 Lactobacillus amylovorus strain PMRA3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1115530 29 100.0 32 ............................. TACTTATCGTAGACTGGCTTTAATCGAAGAGC 1115469 29 100.0 32 ............................. AAAAGGAATACGACCGAGGCCGTGGCGGTACT 1115408 29 100.0 32 ............................. AATATATCCCCAATTCACTAATGACACCCCAT 1115347 29 100.0 32 ............................. AAACTTAAGTTATCAGAGCTTAAGAAGTGCAA 1115286 29 100.0 32 ............................. GTATACGAAATAATCCCAGCTTTCGGGTCTTT 1115225 29 100.0 32 ............................. AACAAATCTATAGTGCTTAAGTCCCCAAGCGT 1115164 29 100.0 32 ............................. ACTGATGGCAATAGTGAACAAGGTTCAGCGCC 1115103 29 100.0 32 ............................. GCGGTGGATAACTTTGTTGAAGAAATAGAGCC 1115042 29 100.0 32 ............................. TGCTGGGGCTGTCATGGCGTGGCAAAACAATT 1114981 29 96.6 32 ............................C AAGATGAGAACTGCTAAACCTGATGAAATTAA 1114920 29 100.0 32 ............................. TAGTTCCTGTTGCCAGTCATCGACCAGCGGGT 1114859 29 100.0 32 ............................. TATGATGAGACAAAGAAAAGAACTATCAAAGA 1114798 29 100.0 32 ............................. AATTAATCAACTAAGCGAGATAGCAAAATGGG 1114737 29 100.0 32 ............................. GATGTGCGGGGCGTCGAGTTTATCAACGCGTC 1114676 29 100.0 32 ............................. ATTGAAAACGGCATAGCAGATCCAAGAATTAG 1114615 29 100.0 32 ............................. AACCTAATGCGAGCATTTTGTGCAAGCTATTT 1114554 29 100.0 32 ............................. GTGCTTGGCGAGTGCAGACGAACTCAACGCAG 1114493 29 100.0 32 ............................. TTAAGAATTGCTAAACCTCAAATTACTTTCAA 1114432 29 100.0 32 ............................. GTGCTTGGCGAGTGCAGACGAACTCAACGCAG 1114371 29 100.0 32 ............................. TTAAGAATTGCTAAACCTCAAATTACTTTCAA 1114310 29 96.6 32 ............................C GTTGTGCTTAACTACAACGCTAAAAAGTATCA 1114249 29 100.0 32 ............................. AACGGCGAAAAGGCAACCGGTACCGCGGAAAC 1114188 29 100.0 32 ............................. ACCTCATAGGTATTATTTATATCAATGATAGG 1114127 29 100.0 32 ............................. TAAAAACTGGGATACAATCGAGCGACAGAGCG 1114066 29 100.0 32 ............................. AATTCCAGTAGCACCACGGCTGTGATATTGAG 1114005 29 100.0 32 ............................. TAATCGTTGTACCGTCGTCTATCGTTCTAGCC 1113944 29 100.0 32 ............................. TAGTGCCGCCGTTGGGGGCGCAATAGCGCAAG 1113883 29 96.6 32 ............................C CGGTGCAAGTTGCTTTTCTCAAAACTCGCCAG 1113822 29 100.0 32 ............................. AAATTTAATAGTTCACTTGAAAACCAAGTAGG 1113761 29 79.3 0 ....................A.CA.ATT. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.0 32 GTGTTCTCCACGTATGTGGAGGTGATCCT # Left flank : AGTAGGAGTAAAATAATCTCTATTGGAGCGATTAAGGAAAACTTAAAAGGTGAAGAAGAACAATTTTATCGCTTGATAAAGATAAATGAGGCTATCCCAGAGAAAATTACTGAATTGACGGGATTAACTTCGAAGGTTTTAAATGAACGAGGTGTTACTTTAGAACAAGCTTTAAATGAATTTCGAAAGTTTGTTGGAAGTGAAATGATAGTTGGATACAATTTGTCATTTGACAATAATTTTTTATTGAAAGCATATTTAAGTATTGGACAAAGGGCTCTTGTAAATTCAATGAAAGATCTCATGGGTATAGTTAAAGAAAAAGATATTTTCCTAGATAATTATGACCTTGAGACTGTTTTAAAAGAATATGGGATAAAAAACGATAATAGACATAATGCATTAAGTGATGCTCGAGCCACTTTTAAATTGGCTAAAGAACTGAATAAAAAAGGTTATTTGCAAATTTAAGGATGTTGATATATCAAGGATCTTTTACT # Right flank : TTAATATGTCAAGTGAGCAACTAATCTACAGGATTTGTCCTGTAGATTTTTTGATTTCTGTTTGACAATTAAAAGTTTCGAGAGTAAGATAATTAACAAATAATTAAAAGATTTTGAAAAGCAGAGTAATCAATAAGATTTTATTACAGAGAATTGCTGTTAGATGAGAAACATATAAATGAACTTGATGAACATGGGCTTGGATATCAGTGTTAGCGATATTTAGCTAACAACGGCGTTGTGAACCGTTATACGTCACAAACTATTATTGTAGTTAATGAGATCTGCTGTGTGAACAGTAGATGAAGTAAAGGTGGTAACACGAAGCACTCGTCCTTTGGGATGAGTGCTTTTTTGCTTTTATTAAAAATGAGAAGGAAGTGGGTAGAATGAGTTTAATTGAAGATGCTAAATCAGGAATTGTTTTAGATGGTGCAATGTCTGATGAATTGGAAAAACAAGGAGTTGAAACTGACAATAAGCTATGGACGGCAACTGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1126089-1124964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029754.1 Lactobacillus amylovorus strain PMRA3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1126088 28 100.0 33 ............................ CAAACGTCGGTTTTTCCTTATGGTAACCACGGG 1126027 28 100.0 33 ............................ TCATCTTTAATACGTCCATCGTTTATCCTTTCC 1125966 28 100.0 33 ............................ TTAAATTATTTGATCGTGCAGCTAAAGCAGATA 1125905 28 100.0 33 ............................ TGATCTTTGATTCAAAATCGTCAATTGCAAGGT 1125844 28 100.0 33 ............................ CAAAGTAACAGCGGTCTAGCATTTTAGCATAGT 1125783 28 100.0 33 ............................ TACGGCCGGCCGCTGGGACACGCGCCTCGTCGA 1125722 28 100.0 33 ............................ CACTGTAACCTTAACCGCTAACGCTGGTTATAA 1125661 28 100.0 33 ............................ TAAATGCTCTTTTTTACGTCTTCGCTAGTTTGT 1125600 28 100.0 33 ............................ TACCAATTAAAGTGCCTAGACTTAACAAAATGT 1125539 28 100.0 33 ............................ TAACATTGTCTTTGTCAACTACGATTGGTTGTT 1125478 28 100.0 33 ............................ CAATAGATGTAAATAACAAAAAATACAGTTTTT 1125417 28 100.0 33 ............................ CTGACGACGCAGACTTGCCGTTTTAAAAGGGGT 1125356 28 100.0 33 ............................ CCAGTCCGACTACCACCAGCTCAAAACAGTGGG 1125295 28 100.0 33 ............................ TGTTTGACCAAGTTTTACAGACTTTAATAATGG 1125234 28 100.0 33 ............................ CGTGCGGCGCCACTCGTTTGGCGTGCGGTAAAA 1125173 28 100.0 33 ............................ TATCCTGAATATTTGCCTATTAATGGGGAATGG 1125112 28 100.0 33 ............................ CTTAATATCGTTCATTCTCTTATTCTCCTTAAA 1125051 28 100.0 32 ............................ TATTCAATTATCAAGCACAACTAGTTGCTAAA T [1125025] 1124990 27 71.4 0 ..........TAA.T...A....-..TA | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.5 33 GTGTTCTCCACGTAAGTGGAGGTGATCC # Left flank : GATCAAAAGAAGTTTGATGAACTAGGCGAAAAGCTGTTTATGAAGGGTGTTTTGCAAAACTTTGAGCAAAAGCATGGTCCAATTAAAGGCAGAATGATGGTTACCGAAGGTAAAATTCCACCTGAAATGCTTGTTAAGTTGCAACCAGAACTGATGAAAAATCCAAAATTTATTGTAGTTGAAGGTAGCTTTGACTTTTCAAACTATATGATCGGAATGGTTATTGGCCTTAACCCTGTTCGTCCACTAGCTAATGGCTGGTTGATTCCACAATTGAACCATCCTGGTATTAAGCCTACTAAGAATTGGCAAGAATTCTTTATGGAAAAAGTTATGGAGAAAACTGATGATAATGGAAAGATCGATTTGCCACTTTATAGTTGGATTTCTGATAAGAGTGATTTAACTTTGAGCGATAAGGAAAAATAATTTGTGCTTAAAGTGAATAAAAATCTAGTTTTTGTTTTTAAAGAATGGCTTTGTTATAGGGATCTTTTAGT # Right flank : TTTTAAAATTTAAAAATCTTAATAGAGGGAAAAATAATGAAAAAATTATCTAGGTATGCAAAAAATCTTTGGGGTAAGAAGGCCACTCAAGATAAAACTGAATTATGGTTACCTTTAATTGCACATATGATAGATACTAAGAATGTAATTAATTGGCTTTATAATCATTGGTTGAATCAAGGACAACGTAATCTATTTCTGCAAAACATGTCAGATATAGATGTACAAAAATTAGTTAGATTTTTAGGCTATATTCATGATATTGGTAAAGCAACACCAGCTTTTCAGACGAAGGAATCTTATAATCATGATCGTGATTTAGACTATGATTTGCTTGAGCATCTATTAAGAAATGGCTTTACTAATTTAGATCAATTGCATTTGGCGAATGCTCGTAGAACACCACATGCATTGGCTGGTGAAGCTATTCTTGAAAGAGAAGGACTAAATACTTCTGTAGGAGCAATTATTGGTGGTCATCATGGAAAACCTCAGAATGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //