Array 1 24721-26155 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKV01000001.1 Ezakiella coagulans strain DSM 20705 Ga0215668_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 24721 36 100.0 30 .................................... GATTAATGCTCATAAATTCTCCTTTCCAAT 24787 36 100.0 31 .................................... TTCTATATAGAAGCGGTTCGGACTTCGGTGT 24854 36 100.0 30 .................................... TTATAGTACAAGCTGTTGGTCAATGTTTTA 24920 36 100.0 30 .................................... CTTTAAGTAGTTTTCATCGGTTCCTGTCTT 24986 36 100.0 30 .................................... AAAAGTGCATTGGTGGATAATCGCACCGAG 25052 36 100.0 32 .................................... TTGAAGAAGCCGCTGCAAAGAGAAAAGAGATT 25120 36 100.0 31 .................................... TATAATTAATATGGTATAATTAATGTAGATA 25187 36 100.0 31 .................................... TGTTCAATCTAAAATCAAAAACATCGCTTTC 25254 36 100.0 30 .................................... TTAAGTGAATGGATTGAGATCGTTGAATCT 25320 36 100.0 31 .................................... AGATTGAATATATCGCCGATTTTAAGTACAC 25387 36 100.0 31 .................................... TTATACGGAGATTAAGGAAGAGGGCTATCTT 25454 36 100.0 30 .................................... TTAAAAGATATTGTTGACAAACACGGCTAT 25520 36 100.0 31 .................................... TAATCGAGGACAACGTGTATTTGGTGCTTAG 25587 36 100.0 31 .................................... GATGAAGTTTTAGAAGAAAACGAAGCCTTGG 25654 36 100.0 31 .................................... ACATCATCAAGCCTTTAACTTTGTGGATTAG 25721 36 100.0 30 .................................... AAGAAAAGGATATACCAAGTCCGATAAACT 25787 36 100.0 29 .................................... CCATTCTTACCCCAACCACGACCCGCCAT 25852 36 100.0 32 .................................... TTAAAGCTTACGGAGATACAACAGCAAGAAAG 25920 36 100.0 30 .................................... TTAAGTGAGTGGATTGATATTGTTGAATCA 25986 36 100.0 31 .................................... TAAAAATTATGCAGAAACAATGCACATGTCT 26053 36 100.0 31 .................................... AAAGTAGATATTTTGAAATTACCAAAAGAAG 26120 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 22 36 100.0 31 GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC # Left flank : CAGTTTAGAAGCCAACAATGCAAACATTTTAAAAAAACTCTACACAGAACTTGAAAAAGATATAAATTCAGAGGAAATTTTCAATAAAAAAATCGAAATGGAAAGCCTGGCGGCGAATATAGCAGATGATTTGATTCACATGTCAAGATTCTCCTTAACAGCAGGGGGTATTAATTATCAAAACTTTTTTAAAGCCCTAGCCATTGAATTTGATTATGATAAAAATTCAATAATTGAAAAACTAATCGAATATATAAAAGTCACAGCAGACCTATTAGATAAAAAATTATTCATAATAATAAACCTTGATAGCTTTTTAACTGAAGAAGACTTAGTTGAACTAAGTAAATTCTTATGCTACAATGAAATTAAGGTTTTAGCCCTACAAAATAAAATCACAAGACAAGTCAAAACTTGTGAAAACTTAAGAATAGTCGACCAAGACCTATGTGAAATATAGCTATCGTCAAGACTAAATAACTCCCAAACATGAATTTGAG # Right flank : CGGCCTTTGCTTTTATATTCAACCAATTTATTCATAATTCTGGACGAATCATGAACATTGCAGAGGAAATTTAGTTTAAGGTTTATAGGAATGCTTTTTATAATAATATTTATATAGACTTTGAAAATTAAGACACTGGGTCTTTGCCACCCTTTTGCGATCTTGCTGACAGTTACGGCATCTCGCAAATAAAAAAATAGATATAAAATATAAAAATAAAAACTCACAAGCAATATAAAAACTTTATTGTTTGTGAGCTTTTTTAATACAACAAAAATGTTATAGTAAATTCGTGATTATAAAAATCATAAAAAAATAATACGTGGTTAGTGGAAAAAATTATTAATTAATCTCGTGCATTCAATAATATTTTAAACGTGATATAATAAGTTTAGATGAATTTGAATTCACGATCAAAACGCTGCTGGATTCAGTGATTTAGCCTATGTAAAAAGGTTTTGACATAAAAAAGACGTTGATGTAAAGAGGATTTGATAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTTATGTAATTTCATATAGGACTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 41339-44173 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKV01000001.1 Ezakiella coagulans strain DSM 20705 Ga0215668_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41339 29 96.6 32 ............................C GCTCATGGTTCCTGCGAGTGCTAATTGAATGT 41400 29 100.0 32 ............................. AGTCAATCGAGACATTGAAAAGGCTTGCTAAA 41461 29 96.6 32 ............................C TCTCTCCGATTCTAAGTCCCAATTTTTCTACT 41522 29 100.0 32 ............................. GACGAGGAAGAAACTCATCGATAACCCAAGCT 41583 29 100.0 32 ............................. ACATTTCCGCTCATACCAACACATCACGTAAT 41644 29 100.0 32 ............................. TGTAAAGGCAATGCTTGATAGTGCAGACAAAA 41705 29 100.0 32 ............................. ATCCCTTGTTCTTTTTTAATTTTGTTATATTT 41766 29 100.0 32 ............................. ATCACCTTAACTTCCTTGTTCATGCTTATAAA 41827 29 96.6 32 ............................C AAACTACTCGATGTCACATGTTTATAGATTGC 41888 29 100.0 32 ............................. AATCACTTGGTCTTTGTCGGAGTAAACTTTGA 41949 29 100.0 32 ............................. TGCACTTGAAAAGACCAATGAATTTATTTTTA 42010 29 100.0 32 ............................. TCAATTTCACTTACAATAAGTTGTACGATCTA 42071 29 100.0 32 ............................. ATCGAAGCAAAAAGGACCATGAGATGTGTGGA 42132 29 100.0 32 ............................. AAAATTTCCAATTCACATCCGAAATTTGTAAA 42193 29 96.6 32 ............................C TATCTTTTAACTGTTTCTACAGCAGTTAAGAT 42254 29 96.6 32 ............................C GCTGTCAAGTTCTGCGATATTCTCGAAATCGT 42315 29 86.2 32 ...........A.AC.............A AGTGTCGTGTCACAGTTTCCGACAATTGTGTC 42376 29 96.6 32 ..........T.................. ATTTCCGAACAACAACTTTCGTTCATAACCAA 42437 29 100.0 32 ............................. AAGCAAATTCAAGATTTAACAGTTGAAAAGAC 42498 29 96.6 32 .......T..................... ACGGAGAAAACTTCCCAGCTGAAGCGGCACAA 42559 29 93.1 32 ..T...................C...... ATGAAAGAGATTATAGGCAAGCAATCCGCAAG 42620 29 86.2 32 ...........ATAC.............. AAGCCATTCCAGCTACTGCTAATAAGCTTATT 42681 29 89.7 32 ...........A.AC.............. GACGATAAATGGATTTATGATTGGTGCGATAT 42742 29 89.7 32 ...........A.AT.............. ACGACGGCAAGGTATTCATATATCCAAAAGAC 42803 29 93.1 32 ....................T.......C AGGCACGGAAAGACAATTGACGGTACTTTCGT 42864 29 86.2 32 ..T........A.AC.............. AAGTCCATAACATTTTCACCGATCCTGCTGCT 42925 29 100.0 32 ............................. AAAGACGACGGCGGAGATAAAGCTGCAATTGC 42986 29 96.6 32 ............................C ATGGATGAGGTTTCAGATGTGCAAAAGCTTGT 43047 29 89.7 32 ...........A.AT.............. GACTATATGAACGTAAAAGTTGATGGCATAGT 43108 29 86.2 32 A..........A.AT.............. ACGGTCTTAAAGATGGCAAAGAAAAGAGCTCT 43169 29 86.2 32 ..A........A.AC.............. TGGGCGACAGGAAGATAGAAACAGAAGGCGAA 43230 29 89.7 32 ...........A.AC.............. GTTCTTGGAATGAGTCCACAAACGCTGAGAGC 43291 29 86.2 32 ...........A.AC.............C GTCGTTGAGTTCGGTTGGGGTGGACTTCATGC 43352 29 89.7 32 ...........A.AC.............. GACTTAAAAAACTCTTCTTCAAAAAGCGTATA 43413 29 86.2 32 ...........A.AT.............C AAAGACTTGAGAGAATTGAAATAGACCTCTTA 43474 29 86.2 32 ...........A.AC.............C AGTGTCGTGTCACAGTTTCCGACAATTGTGTC 43535 29 96.6 32 ............................C AATGTTTCGCCGACAACCTACGAAAAATATGA 43596 29 86.2 32 ...........A.AC......A....... ATCAAATAACCGTTACCCGATAGCCATGCTGC 43657 29 86.2 32 ...........A.AC.............C TATACCGTAAGGATTGAGGGCGACACTTTTAA 43718 29 86.2 32 ...........A.AC.............C GGATAGGTGGACAGTATGAAGTATTGGAGCAT 43779 29 96.6 32 .................T........... GATTACAGACAGAAAAAAGTTGAAATTAACGA 43840 29 89.7 32 ...........A.AT.............. ACAGATAAACCATATTATCCATTAAATTTTGA 43901 28 89.7 33 .................-T.........C AAGCTTGAAGTCGCAGCAAAGAAGTCCGAAGGA 43962 29 82.8 32 .........A.ATAT.............. AAAAAGAGTACACAGATTGGTGATATTGCCAG 44023 29 89.7 32 ...........A.AC.............. GTTTTGCTTGAAAAGACGGACAGTGTTTTGAA 44084 29 89.7 32 ...........A.AT.............. ACCGTCACCACGCCACCGCCACTCAATCTTAT 44145 29 75.9 0 ...........ATAT........A..AT. | ========== ====== ====== ====== ============================= ================================= ================== 47 29 92.9 32 GTCCTTCCCGCGCGAGCGGGGGTGATCCT # Left flank : ACTTGATTACTTAAACGACAGAATTATAGAAATCGGGGCGGTCAAAAAAACGGATGGAACCCAAAGGTACAGCTGTGTAATAAAATATGACGGGAATTTAAATGAGACAATAAAAAATTTGACCGGGATAAATGAAGACGATTTAAAAAACGGAAAAGAAGAAAAATTTGCAATCGAAGAATTCTTAAAATTTATAGGAACGTATCCTATAATCGGTTACAATATTGACTTCGACATAAAATTTTTAAATCAGGCGCTTCAGCGAAATGGATTTGCGCCAATAAAAAATAAAACATATGACTTAATGAAATATGTAAAACAGGAAAAACTGTTTTTGGAAAATTATAAACTTCAGACCGTTATAAAAGAGTATGGAATTGACGAAAAAGTGCCGCACAGAGCATTGGGCGATGCGGAAATTTGTTTGAGACTTTTGGAGAAAGTAAAGAAATTACGGGATCTGTTAAAATAAAACATTGCAAAATACGGGATCTTTTAAT # Right flank : TATGAATTTAAAGAGATTAAAAAATAACAAAACAAATTAAGGCACGTATCCGTGTCTTTTTTTGTTTTAATTTTTTCTTTTAATTTTCGCAATCACTCTCGAGTTTATACTTTCTTTTCACATCATGGCACTTAGATTGACTTTTAACTTCGTATTATATATAATGAAGGCAGGAGGTGGTCGTATGGATGTGATAGAGAAGCTGAAGATTTTAACGGATTCGGCGAAGTATGATGTTTCGTGTTCGTCTTCGAATTCGAGGAGAAAAAATACAAAAGACGGTATCGGCAATGCTTCCGTTGCCGGTGTTTGTCACAGCTGGAGCGAGGACGGGAGATGTATTTCGCTTTTGAAGATTCTTCTGTCGAACAAGTGCGTTTATGACTGCGAGTATTGCATCAACAGGCGCACCTCCGATGTTCCGCGTGCGGAGTTTACACCGCAGGAAGTGGCGGATTTAACGATAAATTTTTACAGGCGAAATTATATAGAGGGGCTTT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTCCCGCGCGAGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //