Array 1 53485-54185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXYO01000013.1 Escherichia coli isolate YS river water, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53485 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 53547 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 53608 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 53669 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 53730 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 53791 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 53852 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 53913 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 53974 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 54035 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 54096 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 54157 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTTTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79889-81199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXYO01000013.1 Escherichia coli isolate YS river water, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79889 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 79950 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 80011 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 80072 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 80133 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 80194 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 80255 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 80316 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 80377 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 80438 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 80499 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 80561 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 80622 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 80683 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 80744 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 80805 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 80866 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 80927 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 80988 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 81049 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 81110 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 81171 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //