Array 1 223099-223347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059099.1 Flavobacterium psychrophilum strain FPS-S9 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 223099 42 100.0 27 .......................................... ATTGAAAAAAGTACCTTCCTTAATAGT 223168 42 97.6 27 ...A...................................... GCGTGCAAAARCACCATTTTCAATAGC 223237 42 100.0 27 .......................................... ATCTGCAAAAGCATTCTCTCGAATAGT 223306 42 97.6 0 ...................................T...... | ========== ====== ====== ====== ========================================== =========================== ================== 4 42 98.8 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : AAAGGAATTAAAATGACAAATAATAATTTTCTCATGTTTTTTGTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTTCAAAAGCATCCTCTCCAATAGM # Right flank : AACCGCCAAAAGCACCTCGATTAATAGTAATCACAGAATTAGGAATTGTAACTGATGTTAAACCAGRACAATCTGCAAAAACATAATCTCCAATAGTAGTCACAGAATTAGGAATGGTGACCGATGTTAAATTATTGCAWTGTATAAAAGCAKMYTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACGGTTTGCTGTAAAAGTTTGTGCTATTCCTAAAAAAGGAATTAAAATKAYAAATAATAATTTTTTCATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTTGGTTTGTTATTAGTTCTACAAATTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGGCCTA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1326105-1325529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059099.1 Flavobacterium psychrophilum strain FPS-S9 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1326104 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326028 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325952 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325877 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325801 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325726 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325650 46 100.0 30 .............................................. AAGCAAAATAAAATAAYAGAAWTATATTAT 1325574 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 8 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GCTTATAATTACCAACTATATCCGTGTTTGAATACACATTGCCACCGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACCGTTTTCGCACGTGAAATCAAAGTACTATGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTTTTAAAAAATGGTTAAGTAGGAAAACTTAGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTCCAGTAAGCGAGATGTCGTATATCAAAGTGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAGCCAATGCCTTGTGTCCTGTTATGTGTTCGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAAAAGATTTAGCAACATAGATGATTGTTTTGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATNNNNNNNNNNNNNNNNTTTTTATTTAAAGCAACTGTAAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //