Array 1 751854-754744 **** Predicted by CRISPRDetect 2.4 *** >NC_019779.1 Halothece sp. PCC 7418, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 751854 37 100.0 35 ..................................... CATTTAGCATCATAAGCCTGCTTGGTCAGATGATA 751926 37 100.0 36 ..................................... GAAGGAAATCCTGACCACACCGATCGCGATATCTCT 751999 37 100.0 33 ..................................... AAGTGAAGAATTTAACTCACTTAAGGAGTCAAT 752069 37 100.0 33 ..................................... TTCTACCAGTTGTGGCTCTTTTTCTTTATAAGC 752139 37 100.0 39 ..................................... TTCTTATCAAAAATAGAAATACTCTCGCAGTGTATCCAA 752215 37 100.0 38 ..................................... TAAACGGATACACATACACAGTGGACATCGAGTTCATC 752290 37 100.0 36 ..................................... TGGTGAGGGTTTATGATCATCCTTATGCCAAGAAAA 752363 37 100.0 37 ..................................... ACTGTTATGGGTGAATCTCGCCGAAAACCAAGACGGA 752437 37 100.0 34 ..................................... CAATCGTCAAAACAGTGATGGCAGTAATTCGGAA 752508 37 100.0 47 ..................................... TGGCTATTAATCTCTCTGTAGAACAACGTCAAACGATTCAAGTATTA 752592 37 100.0 37 ..................................... GATTTTATCCTTTTTTTTGCTATAGTTCCGCTTTTTC 752666 37 100.0 36 ..................................... CTAGCGGTAGCTGCTACCACCTCATCTGCTACCAGT 752739 37 100.0 34 ..................................... CTTTTCCGTGCGGTTACTCAGGTTGTCAGCAAAG 752810 37 100.0 45 ..................................... TCGGCGGTATGGAGGGTGTAAGAATTTGAGATGCAGCCAGCAAAG 752892 37 100.0 40 ..................................... TCGAGAGTACCGAGAAGGAATATTTCAGTAAGAGAGAGAG 752969 37 100.0 35 ..................................... CTGAGAAGCAATAATCCTGCCACCATATCAGACAA 753041 37 100.0 36 ..................................... ATTAATCCGATGGAGTAACTGCCATCTGGATATTCG 753114 37 100.0 37 ..................................... AATACCTACCAGTTACTACCAACTGGTATCATATTAG 753188 37 100.0 33 ..................................... TGGACACAACTACCAAAACTCCCCCAAGTCAAC 753258 37 100.0 35 ..................................... ATCAGGCTTAGGGGGCAAAGTGGCTCTAAGGAATA 753330 37 100.0 33 ..................................... TTTTCTTTTAGGCTTTTCTTTAATCCGATTCAA 753400 37 100.0 42 ..................................... CCCCAACTGGAAACTAACGGAGGCACATTTGATCCGATTCAA 753479 37 100.0 35 ..................................... ATGGCAATGAGGTAGCAGGTGGTAGCTATGAGGAT 753551 37 100.0 37 ..................................... CCCTTCCGTCCCCCCAAAGGGGGGAAACGGATTTTCC 753625 37 100.0 34 ..................................... TTCCCTCACAGTATGCTTCTACCAGTTGCTGAAG 753696 37 100.0 35 ..................................... TCCAGAAAATTTGATATGAGACGAATAGCTCTTAC 753768 37 100.0 36 ..................................... TAGCCAAATCTCCCTCGGGGATTCAAATCCATTGGA 753841 37 100.0 37 ..................................... CATCAATAAGATTAGTTATAAAGTTATTGAATCCAAC 753915 37 100.0 34 ..................................... TGATGTTTTCTATGATAAAGATTACGTCATTAAT 753986 37 100.0 34 ..................................... ATCTGTGTCTTTGTTCTTTACGCATTGTTAATTC 754057 37 100.0 35 ..................................... ATGGCAAGTAAAAGTTATTGGGAAAGGAAGTAAAG 754129 37 100.0 38 ..................................... CTTTGATATCCTCGGGGATATCTTCTTCTTTAGATGGG 754204 37 100.0 40 ..................................... TGATATGGCTAGAATCCTTTCCACATCTAGCTAAAATTTT 754281 37 100.0 33 ..................................... GTAATTTTTCGGCTAGCTGCACAGCTTCTGATT 754351 37 100.0 38 ..................................... ACAGCAAAAGAAGCACCGCCCAAAGTAGTAGCCCCAGC 754426 37 100.0 34 ..................................... AATTAAAACAAACTAAGCAAGGGCGTTTAATTCA 754497 37 100.0 33 ..................................... CGTAAAAGGGCAAGCTAAGCCTGATAAAAATGA 754567 37 100.0 33 ..................................... AAATCTTATTAAAAAAGGCATCTGCATACTCAT 754637 37 100.0 34 ..................................... TAACGGAAACACAGTCCTTTTGTGGCGTGCTTTC 754708 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 40 37 100.0 36 GTTTCAATCCCTAGGAAGGGATTAGGTTTATTGAAAC # Left flank : TCTGAAGCAACAGGGGACACCAGAAATGGTGGGGAGACATCAGTTTCGTTAGAGACTGAGCCTAGCAACCCTAAACAACTTTCGTTGTTTGAGTGGATAGGAGATCAGGTAACTGGTTTCCCAGAATCCCCCACAAAGCGCGTAGCTTAGTGGGGGAGTATGTCAAGAACAAATATCCAGCCTACTCCTTTAGATATCACAAGGAGTTACAGAAGTCTCCGCACGCACCAACTTGCTTTAGCCGTTGGATATAAGGCGGTGAGTTGAAGGCTTCGATAGCCTGAAAACGAACAAACCCTATCAATGACTTTTTTGATCCTCTACACAGAATCAGTCAGAGAGCCATCCGTTTTTAACGGATGGATGAATGGCAAGCAAGGACTTTAGTCCTCTGTGTCTAGAGATTTAATGTAGTCTCTTAAAATTTCTGCCATAGATAAATTTTTTCTTGTGGCAACTCTTTTTAGAATATCATATTGTGGAAAACCGACAAGCACGGT # Right flank : CCGCAGGCCTTGAGAACCCTTGTCATATTGAGTTTTCAAAGTCCAGTTGCGCGAATCTAAGATAATCATAGCAAATGCGATCAGAAAAAACAACCCCAAATCGCTAAAACCCTTACCCTGACAGGTGCGCGAATGGTTTTTGCTTTGTAAAAGCTCAACCCCAGATTCAATAGGCATTGTAGCTAATGCGGAATCAGTTCACATTACACAGCACCCCCGTCGCGCAATTCTCTAAGCAAAGAATTTAACGGACTTCATTTCCAAGCGTATCATCAATTACCGTTTCCAGAGTTCAGAGCTAAAGTTTTAACTTTTTTTTCTAAGTCTGCGGAAACTCTGAGTGATCTCTTATCATGGAGGCTAACTAATCACGAGTATTTATAGATTGATCTAAATAAATCATCGTGAAAAATCTCATCTATAACATGAATTGCAGAATTTGGAGAGGTCTCATCAGCCTAGATTTAGGTGTTTCAGATTCATTCAGCAGATTAGGTATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAGGAAGGGATTAGGTTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 769221-777947 **** Predicted by CRISPRDetect 2.4 *** >NC_019779.1 Halothece sp. PCC 7418, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 769221 37 100.0 33 ..................................... TAACATCTTGAATCTTAAGAGATGGTTTCTTAC 769291 37 100.0 36 ..................................... TCAACCCACGAAGATAGCGAAATTGAGAAATTAAAT 769364 37 100.0 36 ..................................... TCAATTGGTCGAGATGATTCTCTAAATACTCCCCTA 769437 37 100.0 33 ..................................... TTGCCTTTTATCTTATCAGAAATCCCGATATTT 769507 37 100.0 37 ..................................... ATCCCATGATTAAGAAAGCAGTTAGAGATGGGAATTT 769581 37 100.0 35 ..................................... AAATAGAGAAAAACAATACAGAGGAGAATAATAAT 769653 37 100.0 35 ..................................... TAGAATCTTGCCATAAAGTGAAAGCGACAATAGGA 769725 37 100.0 38 ..................................... TCGCGCTGCAAAGTGTGAATGTGGTGGTGGAATGAATG 769800 37 100.0 36 ..................................... TTCAGATAGCCAGTTTTCGCAGCCTACCGCATCCAT 769873 37 100.0 36 ..................................... TCTACCAGTGTGCTACCATTTTCTACCTGATTTAAT 769946 37 100.0 37 ..................................... ACATGATCCTTAAAAACATAGGCTGATAATCTCCAAT 770020 37 100.0 34 ..................................... CCTACATATTTAAGGAAAATTAATGGATAAACAG 770091 37 100.0 40 ..................................... GGATTTCTTGTAAGAGATTGTTTACCTCTGGGTCTTGAGA 770168 37 100.0 36 ..................................... GTAGCAGTAAAAAAGACAGAAATTAAGCAACTGGTA 770241 37 100.0 35 ..................................... TTTAATGCTCTAGTAGATTCTGAACGGTTAATGGG 770313 37 100.0 34 ..................................... ATTTTCTATCAATTGAAAGTCACCCTCATCGCTA 770384 37 100.0 35 ..................................... GCGATGTTGACCTTCTAGTCAATGATAGCACGACT 770456 37 100.0 35 ..................................... ATCTTCAAATCATTAAGAAATCAGCTTCCAATTAT 770528 37 100.0 39 ..................................... GAATTAGGAAGCTCTATTCTACCATGGCTCTACAATTTT 770604 37 100.0 35 ..................................... TCAATTGGTCGAGATGATTCTCTAAATACTCCCCT 770676 37 100.0 34 ..................................... CTCTTTGGCTTGACTGGTGGATGAACAACCGCGA 770747 37 100.0 35 ..................................... AAAAGAATTAATATTTATCCCTCCAGGAGAGTTTT 770819 37 100.0 41 ..................................... AAACTGGAGACTATGCAGCGCGTAACTTCGCAGCTTATCGT 770897 37 100.0 34 ..................................... AGCATAAAGCCCCAGCGCCAATCTTGCCTGCTTC 770968 37 100.0 34 ..................................... GTTGATGATTTGAATCTAGAAAAGTATGGGCAGT 771039 37 100.0 36 ..................................... TATTATTCGGGTTTTCTGACATAATTTCCCTCAAAA 771112 37 100.0 41 ..................................... TCTTCACAATGTTTATCCCTCTCTGGGTCTTCCCCAACGAC 771190 37 100.0 33 ..................................... ATATTTATAAATGTGATTAAGAAATCACACAAA 771260 37 100.0 35 ..................................... TTATCTTTACTGGGTTTTATTGTCTTGAGAACCGT 771332 37 100.0 36 ..................................... ATAAACATTCCTTAGCTGAAAAATACAAGATAACCA 771405 37 100.0 34 ..................................... TCAGACTATCACTGATGGCGGTATGTTCAATCCG 771476 37 100.0 37 ..................................... TTCCTGAGTACAAAGCAGGAAGAAAGGAGAAGCCCGA 771550 37 100.0 38 ..................................... TTTCATCGAGGAGTAAATGAGTTTCCCTAGATAACGAA 771625 37 100.0 35 ..................................... AACGGTATTTTTGGTTTGAAGCGTTCTTTGAGCGA 771697 37 100.0 40 ..................................... CTCCTGCATTCTTCGGTAATCTTCAACCACATCGGCAACA 771774 37 100.0 35 ..................................... GGGATTAAGAATGCACGAAGCATTAAATCTAACGT 771846 37 100.0 33 ..................................... TTGCATCTTTGATTGAATTAAACATTTTTCAAT 771916 37 100.0 37 ..................................... ATAGGATTGATTTTCGATTAACTCATCAACAGAATGC 771990 37 100.0 36 ..................................... ATGACTATGAGGGAATTTTAGCCATGAGTAAAGAAT 772063 37 100.0 33 ..................................... TAATTTAATTAAAGAACAAATTATTTCAGGATT 772133 37 100.0 33 ..................................... TTATCATATTTACATGATGATGAACCATTAATT 772203 37 100.0 41 ..................................... CGAAATTGTATGGTACACACTCGATTGATAGTGAATTTCGG 772281 37 100.0 35 ..................................... AAAGCAAAACTTGGGAACGATTATTCTAAAGTATT 772353 37 100.0 39 ..................................... GTTCTATAAGAATTTTCCCCTGTTTCGTAATAAGACAGT 772429 37 100.0 35 ..................................... GCGCATACATCAAGAAACTGGTCTCGATTGATTTT 772501 37 100.0 39 ..................................... CCAGTCGTCGCAATAATTTCAGCCCCAGAAAAAACATCA 772577 37 100.0 34 ..................................... TGCATATAAAGTCAGTTTTCTGTTATTGCCATTC 772648 37 100.0 39 ..................................... TCCCTTCATCCCATTCAAACTCAAGCATCAGCCTCTACA 772724 37 100.0 35 ..................................... ATTAGTGCTGCCATTAGTGGTTGTGGGCAAATTCA 772796 37 100.0 35 ..................................... TCCTTTTGGTATAAAGGAGAGTATAATGAATTCAT 772868 37 100.0 35 ..................................... AATGATATGGTCACTAGTATTGGCACTATTACCAC 772940 37 100.0 44 ..................................... AAATCACAATATACTACTGGCACAATAGTTAATTCTTCTAAAGA 773021 37 100.0 35 ..................................... AAATCACAATGAATCAGGCAATTGTAAAAGCTAAT 773093 37 100.0 34 ..................................... TGGAAAATAATCAATTCCACCAATGATAAACGAA 773164 37 100.0 36 ..................................... TAATTCAATCAAAGACGCTAAACTTGCGATTCAAAA 773237 37 100.0 36 ..................................... TAGCAATTATTTTGTGAGAGAAAAATTGCCACAATA 773310 37 100.0 35 ..................................... TCTACATGAGCCACATTCTCTGTTTTTCCTTTATG 773382 37 100.0 35 ..................................... TTTGTAAACTTCATTAACTTGTCGATCAGTGTATC 773454 37 100.0 30 ..................................... ATACTTATAAAACGCATCGTTTATAACACA 773521 37 100.0 34 ..................................... TTCCCATATTTCCCGCAAAAAGACACAAATGTTT 773592 37 100.0 37 ..................................... GATGTGAATCATTTTTATTCCTTAAATCATATTTGAA 773666 37 100.0 33 ..................................... TGGGTATATTTCAGCACCAGCACCTGATGAAAA 773736 37 100.0 35 ..................................... TCTTTTGTGTATATCAATATTTTTTGATATGGCTG 773808 37 100.0 36 ..................................... AAAATTCGGTGTGCTCCTAGTAAAATCTCAACTGCA 773881 37 100.0 35 ..................................... TTGATAATCCCAATTAACAGGGGGATTATAGGAGG 773953 37 100.0 36 ..................................... ACTAATTATGACACAAAATAATCAACAGAATAAAAG 774026 37 100.0 35 ..................................... CGCGATGCTGGAACGCCAGACTATACCAATTTTTG 774098 37 100.0 35 ..................................... TAATAAATCATTTAACATTTCTACAGAAACCGCAG 774170 37 100.0 33 ..................................... TAAGATTCTTGTTTTTTTAAATATTCGTCAATC 774240 37 100.0 35 ..................................... TCTTTAGAATCTGAAATTCATGCTACAGATAAAGT 774312 37 100.0 39 ..................................... CTCTGTGTCTGTTGTAATAATGCCATATACTTTTTCCCA 774388 37 100.0 35 ..................................... TGAAATGAATGATTGGTTAGGATTATTGCCTTGGG 774460 37 100.0 36 ..................................... CTTCAACGGGCTTCCCGTGAGCCACAATCGCAAAAA 774533 37 100.0 38 ..................................... TGCGTGGTCGTAAATCCCATTGAAAAGAGCATTTCTCG 774608 37 100.0 34 ..................................... TTAATTTTCCAAACGCCCCGACAATACAATTGTC 774679 37 100.0 35 ..................................... CTTAAAATACTCAAAATTCATACAACGAGGGAAGT 774751 37 100.0 34 ..................................... ACAACAGAACAAAATAATGACGGTAGCACCAAAA 774822 37 100.0 35 ..................................... TTAATTATTGATTATTTTTTTCATAAAAATCAATA 774894 37 100.0 34 ..................................... GATTTTTTGTTGGTTCTAAATAAGATAATCTTAA 774965 37 100.0 33 ..................................... CTAATTTTACTTTTGTTTTACCTTCGCTAAGCA 775035 37 100.0 34 ..................................... TTAACATCTTCTAAAAGACCATCATGATAATTTT 775106 37 100.0 36 ..................................... CAAATAATTGTACTAATTGATCTCGATTTGGCTTAT 775179 37 100.0 30 ..................................... AATTGGATATCATGGAGCTTGCCGTTTCAT 775246 37 100.0 36 ..................................... TACAGGCATTACGCGGAATTCCTCTTTGTTTTCCGC 775319 37 100.0 38 ..................................... AGGCTCATGAGACGCTTTATGTGTACGAGTGGAACAAT 775394 37 100.0 39 ..................................... CCTGTTGTTAAATCAGATGACTCATCCGAACAAGGTATT 775470 37 100.0 41 ..................................... TTCAATTGAAATTGTTTTTTTAATTTCAACGGAGATTGCAG 775548 37 100.0 35 ..................................... ATTAAGGTGCCCTTCTTTTAATTCGGAGTATAGTA 775620 37 100.0 40 ..................................... TAGGATGAAACCGCAATCTTCGGGTAAGTTGAGATCTTTG 775697 37 100.0 35 ..................................... GTTTTAGATTGCGGTTCGGTGAAGAAAGGTGGTTC 775769 37 100.0 35 ..................................... CAAAGAAGTTGACAAACTTCTAGACCGCTGGGTTC 775841 37 100.0 38 ..................................... AGATAACTATGCTGTCTATCACGAATTGAACTCTAGTT 775916 37 100.0 35 ..................................... CCCAAATCCTCAATTATTATTCCATCGTATTCTTG 775988 37 100.0 38 ..................................... TAAGCAATGATGATGGAGATGGGAAATTTTTAAACAGA 776063 37 100.0 39 ..................................... CCAAACCACATAAGGATGGGATGATTAATGTTGTCATAA 776139 37 100.0 37 ..................................... TTTTTCAATGCTAAATGTCCTGAAGCTCGTCCTCCAA 776213 37 100.0 36 ..................................... TCATAACCGAGCGCAGAAAATAAATCTAACATGATA 776286 37 100.0 41 ..................................... GGGAGATATTTTAGGTTTGATTACATCATATTTAATGAAAA 776364 37 100.0 34 ..................................... ATAAAATCAGTTGTGCAATGAGATGGGAAAGATG 776435 37 100.0 35 ..................................... TTGGCTGCTTCCTCATAGGATAAGGAATACCCGAT 776507 37 100.0 37 ..................................... ACATTGAAAAGATAGCATAAGAAAGAATCTCCTTACT 776581 37 100.0 38 ..................................... AATCTTAACGTAGTGCCCTTCTTCTGTGGTGACGTAAT 776656 37 100.0 34 ..................................... TGATGATGTTTTTTTCTTGCTCTGTCATTGGTCT 776727 37 100.0 42 ..................................... TGATTTGCGAATATATATCGAATATTCATCGCTATCAATCTC 776806 37 100.0 36 ..................................... TTTCTTGCATGGGATGTGTTTCCTTTTTGTTTGTTG 776879 37 100.0 37 ..................................... AGATTGAAAGTTACCAGCTACAAGGAATTATTCTGTT 776953 37 100.0 37 ..................................... CTCAGAGGCTACAGTGAGGAATCCGAGTTGCATATCA 777027 37 100.0 38 ..................................... ATCACACTACGGCTTAGACATTTTGAAGGCTAAAGCGG 777102 37 100.0 33 ..................................... TTCTTGGCCTTCTACCTCTATGCCTAGGTAGCA 777172 37 100.0 43 ..................................... AACTCTGAATAGAGCTTTGGAGACCCTTTACGAGGGTACCAGT 777252 37 100.0 35 ..................................... TTCTGCACGGTCAATGCGTGGGCGGGGTGACCCAA 777324 37 100.0 34 ..................................... GCCCAATCCTTATTGTAATGTGTAGGGAAGAATT 777395 37 100.0 36 ..................................... TGTAGGAGAAAAGAAAAAAGCCCGACTCGTTAAAGC 777468 37 100.0 37 ..................................... TAAAATCCTATATAGAATTAAAACTTCTATCTTAATT 777542 37 100.0 41 ..................................... CCATTTATTGTGAGGGTTTCTTCGTTCCTCCAGATAGCCGA 777620 37 100.0 40 ..................................... TGTGGTATATGTTTCTTTGAGCGCGATCGTTTAATCCCTA 777697 37 100.0 34 ..................................... TCATATTGGAGGCGCACCTTATACGCATCCCCAG 777768 37 100.0 35 ..................................... ACAAGGGAATTAGCACCCACAGCACCCGCCGAACA 777840 37 100.0 34 ..................................... ATCTGGGATTCCCTCCACATCAACTCCTAAATCT 777911 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 120 37 100.0 36 GTTTCAATAAACCTAATCCCTTCCTAGGGATTGAAAC # Left flank : TATGTTGTCATTTGTTACGATATCTCTGACGATAAACGTCGCACCAAAATCCATAAGATCCTGAAATCTTACGGACAGTGGATGCAATACAGCATCTTTGAATGTGAATTAACTAAAGCCCAATACGCGAAGTTGCGCGATCGGTTGAGTAAACTGATTAAAGCCGAAACCGATAGCATTCGTTTCTATTTCCTCTGTCAGTGTTGTCAGGGGAAAGTGGAACGCATTGGCGGGGAGGAATTGCGGGATAATACAATTTTCTTTGCTTAGAGAATTGCGCGACGGGGGTGCTGTGTAATGTGAACTGATTCCGCATTAGCGCGATCGCGCTTTCACTCTGGCTTTCAGCCTCGACTCGCCCCTAACCTATCGCGCACCTGTCACAGTAACGGTTTTAGCGATTTGGGGTTGTTTTTTCTGATCGCATTTGCTATGATTATTTCAGATTCGCGCAACTGGACTTTGAAAACTAAATATGACAACGGTTCTCAAGGCCTGCG # Right flank : CAACAGGTGATGACGGTAGCGCGATCGCGCATCTCTTAAATCCTACATTATCCAAACTGGTAAGCCATATTGATAGGAAGTTTAAGGGAAGAATCGTTAGTAAAAGTATAGTAATCCCCTCGTAAATTCACATTACAAATCAAACTCACAGGTGGCATATTGACGACATCGTAGCTAATTACCTGATTGGTAAACATGACATCGAGTGGGTTGAGAGGATGAGGATAAGTAAAGGTTTGATTGCTGTATTTTTTAGCAACAGATAATTCTTCTAAAAAGAGTTCTGCTTTACTCATCCATTTTCCTAAACGAATAAACTTGGGAAGTCGCCATTGCCATTTTTGAGAAGTGGTTTCCTTTTGCAAAGATTGTTCAGAAATGATGTAGCATTCAAAAATACTTTCAGGTGTAATTTCTTTGGTGCGTCCATAGCTGGGGATATTTTTCTGCGTCTTTTGCATTTCCACATGATAGCGGTTATCAGCATATTTCCAAGTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAACCTAATCCCTTCCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1439671-1439848 **** Predicted by CRISPRDetect 2.4 *** >NC_019779.1 Halothece sp. PCC 7418, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1439671 30 100.0 45 .............................. TTACGCTAATATTGATTCTATTTCTTCTTTTGCAGAATCCTTTCA 1439746 30 96.7 43 ..G........................... GACAGAAGGTTAACTTCGGAAATCCTTCCTCATCGAACCTTTC 1439819 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== ============================================= ================== 3 30 97.8 44 AAAGGGGGGCGAAGGGGGGATTAGAGAAAC # Left flank : ACTATAGCAATCCCATAGGAATTGTAAATTAATCCCCCCTAGCCCCCCTTCGTAAGGTAGCTGAGTTTGGGGTAATTGAGCCGTCAATGAACGATTGTAAATTAATCCCCCCTAACCCCCCTTCGTAAGGTAGTTGAGTTTGGGGTAATTGAGCCGTCAATGAACGATTGTAAATTAATCCCCCCTAACCCCCCTTCGTAAGGGGGGAACGGTTAATCAACTTTTTACATAAGATTTAGAACTGCTAGATCTCCTTTGAGGGTTGATCAATTAGCACGACATCCGATCCCGCCAACCCCCCGTTAAGGAGGATGAAGACAAAACAACTATAGCAATCCCATAGGAATTGTAAATTAATCCCCCCTAACCTCCTCACGCTTGGCTCCGGCTTCGTAAGGGGGGAACGGTTAATCAACTTTTTACATAAGATTTAGAACTGCTAGATCTCCTTTGAGGGTTGATCAATTAGCACGACATCCGATCCCGCCAACCCCCCTTTC # Right flank : CATCTAACTTTTTTAAGATAGTATTTAACATCATGCACACGCTTTATGTTGCCCAGCAAGGGTGCCATGTTTGTCGAGACCAGCAAAAGCTACTGATTAAAAAAGGAGAGGACATCTTAGGGGAAGTGCAAATTCCACTCCTTGAACAAGTTTTAGTGTTTGGTCGCTCTCAAATTACCACCCAAGCCATTCAGGTTTGTTTGCAAGAAGATATTCCCATTGCCTTTTTATCGCGCATGGGCTATTGTTATGGGCGGATTATGCCCATTGAGCGGGGCTATCGTCAACTCTCCCGCTATCAACAGCAGTTAACGCCACAGGATCGACTGATTATCGCTCAACGAATTGTGGAAGCGAAGTTGAAAAATAGTCGAGTGTTCCTGATGCGCCAATATCGCACTCGTCAGAAAGACAGTATTGCACTAGCGATTAAATCTCTCAATTATTTTGCTCAGAAAACGTTAACCGTGAGTCAGCTTGACCAGTTGATGGGAATTGAA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGGGGGGCGAAGGGGGGATTAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1459696-1442117 **** Predicted by CRISPRDetect 2.4 *** >NC_019779.1 Halothece sp. PCC 7418, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 1459695 36 100.0 36 .................................... TAAATTTACTAAAAAAGATGTGATTGATGATTTTTT 1459623 36 100.0 38 .................................... GTAGGTTATATTTACAATAGCCAAAATGGTCAAAAGTC 1459549 36 100.0 39 .................................... CATTCTTATTTCTGGTGCTCTGAGCATTCCAGACTGGAA 1459474 36 100.0 37 .................................... TTGACGCTCCAAGCGGGAGTATCGCTTTACCTCTTCA 1459401 36 100.0 39 .................................... TTGGGTCTGATTGGTCGGACAGTTCGACTAGATTAATAA 1459326 36 100.0 38 .................................... CCTCCGCAATAAACGGAATGCTCTGAAGCTGCATATTC 1459252 36 100.0 35 .................................... TCCATCGCTGCACGGAGGGAGATGTCTAGTGTCAG 1459181 36 100.0 38 .................................... TCGTTTAGAGTCTTACGAGTTCCCCGTTTCTTTTTATT 1459107 36 100.0 40 .................................... AGCTCTGGACGAATGCAGAGAACTGGGTTGCTTTAGAGAA 1459031 36 100.0 37 .................................... TCGATGGTATGTCTCCTCAGCAGAGCGACCGAGTCCT 1458958 36 100.0 37 .................................... ATCATGACGTCCTTCTCTGGCTACGAAGTCCTAATGG 1458885 36 100.0 39 .................................... ACGAGTCCGCCGCAAGGCGGGCGTCCGTCCCATCCAAAT 1458810 36 100.0 37 .................................... TCGACTAAGACTTGGTGATCGTCGCTGTCTCGGTCGA 1458737 36 100.0 43 .................................... GTAAAGCTGACCGCAAGAAGCGTCGTCGGCGTAAGCGTAGCTA 1458658 36 100.0 38 .................................... TAGAAGATAATAAAAACTTCTTCGACCTCATCCAGGTC 1458584 36 100.0 36 .................................... ATCAGTGGAAGTTGCTTCTCCTTCCTGCTCATAGAA 1458512 36 100.0 35 .................................... TTTACAGAGGACGGGAAAGAGAGGTAAGAAACATC 1458441 36 100.0 38 .................................... CCCGCTGTCCTCCCTTGGAGGTGGAAGCGGGAGTGTAA 1458367 36 100.0 36 .................................... TAGAACTACAAGAACTAAAATCCTCTTTGGAGGCTA 1458295 36 100.0 36 .................................... CGTCTACTTTCGCAGCGTAGTCTAAGACTACTTTTT 1458223 36 100.0 42 .................................... CAGTGATGACCAGTTTCTCTCCTTTATAGAAAGTCATCTGGT 1458145 36 100.0 38 .................................... CATCAACACATACACAATACAGTAAGGAGTTTATTATG 1458071 36 100.0 38 .................................... ACGGGATACGTAGTAATATTTTACGGTTTCGCGAAGGG 1457997 36 100.0 43 .................................... TTTACTATAAAAATAAAGCTAAGGCTCTAGGAAGTTATGAGAA 1457918 36 100.0 38 .................................... CTGCACATTACGCTCTACAACTATTTCAACGGTCTCCC 1457844 36 100.0 34 .................................... TAAAAAAGGCCCGCCCCTTGGCGGGCTTTTTTCT 1457774 36 100.0 38 .................................... GCTCTAAGAAATTGAAGTCAGTGAAATATACGTTATCG 1457700 36 100.0 37 .................................... TAGAAGTGGGAGACCAAGAAGACGTAATGGTCTTCGA 1457627 36 100.0 39 .................................... TTAAATGGAGTCACTATGCAACCTTGGGTTGATAGTTAT 1457552 36 100.0 37 .................................... AGAAAAAATGAAACAGTGGTTAGAAATTAATAGAAAC 1457479 36 100.0 40 .................................... GGTATCTCCCTAACGTGACTGAGAACTCTATAAGAGAGTT 1457403 36 100.0 35 .................................... CTGCCGTATTGTTAAAAGGAACAGACCCTGACGGA 1457332 36 100.0 37 .................................... AAGGTAAAAGACTTTATTATCAACCTAGGAATTACCT 1457259 36 100.0 40 .................................... ATTGGGCTAAACCTTCTAAAAAGTCCCTAGATGATTGGAA 1457183 36 100.0 40 .................................... TTAAATAAGGCTTCTCTGCTTCTAGAGCAGTTTTAATAGT 1457107 36 100.0 38 .................................... AAGAAATTAATCAATTACGCCGCGCCGGGGTGTATGGA 1457033 36 100.0 35 .................................... AAGAACGGGAGATAGCACCTTGCGCTGTGCGTCCC 1456962 36 100.0 39 .................................... ACATTGTTCTCTTTGAAGGTCTCTTTAATTTCATGAAAG 1456887 36 100.0 39 .................................... TTGTACCTAAACGATGGAAGAATCATCAAAACTCCTTAT 1456812 36 100.0 39 .................................... TAATGACTCTAAGAGAAGGAGTCTAGGGGACAATGGGGA 1456737 36 100.0 39 .................................... TTCACTGTCTAAGCACAAGTATGTAGGAGAAAAGAAAAA 1456662 36 100.0 35 .................................... ATAGTAATAAGAATTTATAAGAAGATATAGATTAT 1456591 36 100.0 44 .................................... CGCGCCTGCTGAACTGGAAAGCCTAAAATCCTCTTTGGAGGCTA 1456511 36 100.0 36 .................................... TAAAATAGACCCAGGATACACAGTATCCTATCCCGT 1456439 36 100.0 37 .................................... CTTCCTTCCAGGGTGGCATCCTGCTGTACGACTCGAT 1456366 36 100.0 35 .................................... AAGAGCAGCCTATAAAGAGCGGGCGCGGCGAGATG 1456295 36 100.0 37 .................................... TCGAGCTTGGGGGAGAGTAACAATGGGAGCACTTAGA 1456222 36 100.0 38 .................................... CTGGTGACGGAGTTTATTATCGGTTAGACTGCTATGCT 1456148 36 100.0 37 .................................... GAATTTGTTTTAATCGAAGCCGGCGGGCTCGTTCTAT 1456075 36 100.0 39 .................................... CTTAGAACAAATCTTCCCTGAACGCTTTTCTAAAGACTG 1456000 36 100.0 37 .................................... CAGGAACGATTAAATGCTGACTTCTACTTAGTAAGGT 1455927 36 100.0 35 .................................... TACCTCGCTGTTTGCAAGGAAGGTCACCCCTTGCA 1455856 36 100.0 38 .................................... TCCTATTATCTGATGGTTATATTTCTATCCCTAAAGTT 1455782 36 100.0 36 .................................... CTTTAACAGCGGCCTTTTAACCTACACTAAGCAAAA 1455710 36 100.0 40 .................................... AAATGCAAAATCAAATTGAACAAATCGGTGAGAACATTAA 1455634 36 100.0 36 .................................... AAACTAACAATGATTCACTTAGACCTGTTGTTCCAA 1455562 36 100.0 41 .................................... CTCGCGAGTATCCCTGGGATGTCCAAAGAGGACATCGAAGC 1455485 36 100.0 36 .................................... TTCTATAACTACGATGAGTAAAACCATGAACAACAA 1455413 36 100.0 38 .................................... TTAGAAAGGTTAGAGAGTTTAGCAAAGAAAGTTTTAGA 1455339 36 100.0 36 .................................... ATAGACGAAGATTAATCTTTTCACATAAAGTCCCGC 1455267 36 100.0 40 .................................... TCGCATTAAGCCTAAAGAGGTCTTAACTGTTTCAATCGTT 1455191 36 100.0 38 .................................... TTCGAAACATTTAGAGTGGAGAAAAACACTACTAACCA 1455117 36 100.0 35 .................................... CTAAGAACTCGAACGCTTGCTTTGGAATACGGTGG 1455046 36 100.0 36 .................................... GGGTAGATTTGGCTTCTTTAGAAGCAATCTTCGAAC 1454974 36 100.0 40 .................................... ATCGCAAGAAGAAAACAGCGAACGCTGCTCCGTCAGAAGC 1454898 36 100.0 38 .................................... AAGTTATTGACCGAGGAAGTTATTTCACTGTTGACTTC 1454824 36 100.0 40 .................................... TCATAAGAGTTGGCAGAAAATACAAGCAGCTTCAGAGGAA 1454748 36 100.0 46 .................................... CTCTAAAGCTCCTTCTTCGGTAGTGCAGTACACCTTCTGATTAATA 1454666 36 100.0 35 .................................... GGAGAAAACAAAAAGTTCTTCGACCTCATAGAGGT 1454595 36 100.0 42 .................................... ACTGCTAAGTTAGTAGACTTTGTTTATTTAGAAGTCTCCACT 1454517 36 100.0 41 .................................... CAAGCGTTAGAAAAGCTAGAAGCCAAGGAAAAATGGTTTAA 1454440 36 100.0 37 .................................... AACAGTCTGACTTTCTCAAGAAGTACGCGAAAAAGCA 1454367 36 100.0 37 .................................... CAATTTTCTATCCTCGGTTTGGAGCATCCGTCCCCGC 1454294 36 100.0 40 .................................... GTAGGGTTAGAGGCTGAGATGCTAATCTCAGCCGACAAAA 1454218 36 100.0 34 .................................... GTGAGGAATCAACATGGCTATCCGTAAACTTAAC 1454148 36 100.0 40 .................................... TAGCAAACATCCCTTCCATGTCAAAAGAGGATATAGAAGC 1454072 36 100.0 38 .................................... TTAAAGAGATTGAACAATTAAAAGCGGAGTTTAATGAC 1453998 36 100.0 36 .................................... TAATTTTAGCTGCTAGAGACCGCGCGGATCCTTTAA 1453926 36 100.0 38 .................................... AGGAAAGAAAAAAGCCCGCCGAGGGGCGGGGCTTTATT 1453852 36 100.0 42 .................................... TCCAGAACACTCTTAGCTGGAGCTAAGCTACATGGAAATAAT 1453774 36 100.0 40 .................................... GTTATTCCAGACCTAAACTGGAAAATTTACATAGATAAGA 1453698 36 100.0 42 .................................... TTAAATCTCCACTTTGGGGGTTATAAATAACCTCTTTGAGAG 1453620 36 100.0 36 .................................... TTCTCTTTGTCCATGACAGCCCTAACTATAAAAGCT 1453548 36 100.0 38 .................................... TTGGTCACTGGTGTTAGATTGCGTTTAGTTCTGCTCAT 1453474 36 100.0 38 .................................... ATCAGAATAGGTAAAGTAGAGCTTAACCCATTTGCTTG 1453400 36 100.0 37 .................................... TCCTGAGTTGGGGTTCTGGGCTGCGGAGTTAATTCCT 1453327 36 100.0 40 .................................... TCGAAATAAAAGTCCAAGGAGGACAAAACAATGAAAATTT 1453251 36 100.0 37 .................................... AACTATTTATAAACTTTTTCGCTACTTCTTCTTGAGA 1453178 36 100.0 38 .................................... AGTGTAAGCCCCTTGAGATAATTTATCCCATTTAATAT 1453104 36 100.0 36 .................................... ACCAACTCAGAAGTCTTTAGATGAATGGGAAAATGA 1453032 36 100.0 42 .................................... GATTTAGTATCTAGAAGAGCATTTGAAAAGAATATCATCGAT 1452954 36 100.0 34 .................................... TTGATATAATCTAAAGCTCCTTCCCGAATCTCCC 1452884 36 100.0 38 .................................... TTAAAAGAACTAATTTATCAAGCAGTAGAGGAGATAGA 1452810 36 100.0 35 .................................... ACAGACTCTGCGAGAGTCGAAAACTTTCTACAAGG 1452739 36 100.0 38 .................................... TCAAGGCAGAGGGAGGCGTCTGTCGCCCTCAATCGACA 1452665 36 100.0 37 .................................... GTTATGGGAACTCGCCCTACAACTGCCGACCTACTCT 1452592 36 100.0 38 .................................... CCCGAAGATCCAGGTCAGTATCAATATACAGCAGTCGA 1452518 36 100.0 44 .................................... TTAACTTCTCTCAATCCCCTATCCTTAACGCAATCAAAGGTAAA 1452438 36 100.0 36 .................................... GACGACGAACGCCCTCCTCCGCTTTTATTTTGGTGG 1452366 36 100.0 38 .................................... TTAGCAGACATGGGGTTTGAAGATTTCTCACTCCACGT 1452292 36 100.0 37 .................................... CTGAATAAGAACGTTCAGTTCTTCTTGGCTGGCGACC 1452219 36 100.0 37 .................................... TTGGAGAACAACGTGTTCGACCTCCCAGTTATAAAAT 1452146 36 100.0 36 .................................... TCGATAGCGGGACGAGCGTCACCGAGCTCTTCAACA 1452074 36 100.0 45 .................................... ACATTTTACTCTATAAAGTACGTATCGGACGTAGAGAGATCACAG 1451993 36 100.0 41 .................................... AAAGGAGGGACATTTAAACAACATCATTCGTTTTTTAGAAA 1451916 36 100.0 38 .................................... AAATATCGCTGCTGGACTTCGCTAAGGCGGTAACAGAA 1451842 36 100.0 36 .................................... TACATTACAACACAACTACTAAGGAGTATTCTCATC 1451770 36 100.0 36 .................................... TTTTTACCTCAGAAAGGAGAAAATAATGGAAACCTT 1451698 36 100.0 37 .................................... AAAAAAATGAAAATTCTACTCTATAAAGTCCGTATCG 1451625 36 100.0 41 .................................... ATCGGGCGCTGATTCTCTTCATCATACACCCACCACTTGGC 1451548 36 100.0 35 .................................... ATCCTTCTTTGGCAAGTTCGATAAGACGTACCCAA 1451477 36 100.0 38 .................................... AAGAACTATATTCTATTGCATCTGATATTTTCCAATAA 1451403 36 100.0 37 .................................... TTAAACTTCTCTTCTCCTCGAAAGAGGAACGTAATAC 1451330 36 100.0 35 .................................... TCACCCGCACTCAATCACAGAATGGTCCGTTTCAA 1451259 36 100.0 44 .................................... AAAGCAGTTACCCCTTCTTTCTCCCAGCAGTGCCTTACAATTTT 1451179 36 100.0 45 .................................... AACTTAAGTTCGCGGTACTGTGCCGGAGCTTAAGGGAGTTTCAGA 1451098 36 100.0 41 .................................... ATTTATCTTGTAAAGGATGGAGCGCGATCGCCTTCGACCGT 1451021 36 100.0 39 .................................... ATCACGGTTGATTAAACGATACATTTTTTTATCCTTCTA 1450946 36 100.0 38 .................................... AGCGAAACACGGACAGGACACCGTTGTTGTAACTAATG 1450872 36 100.0 37 .................................... GTAAATTATCAGCGATTGGTCCTAGAAAATGGATCAA 1450799 36 100.0 38 .................................... CACGCCATCTACAGCTACTTTCAAGAAGAAGGTTTAAC 1450725 36 100.0 40 .................................... CTAAAGCTTTGGAACTCCGTTTGAAGGAGATTTCCAAAAA 1450649 36 100.0 37 .................................... TGAACAACGTAAACACTAACGGAAACGAAGAACAAAT 1450576 36 100.0 38 .................................... CCGAGAAAAAACCCTTCTCCCTTGAGGAGGTGATAGAG 1450502 36 100.0 40 .................................... ATGATTCTGACAAAGCGGGTCGAGCAGCTTACTGTCTCAT 1450426 36 100.0 37 .................................... TTAAACCAGAAGCAGCAAGAGGCAGTTGACCTCGTTG 1450353 36 100.0 44 .................................... ATCTATTATCTTTGGTTTGAGTGAAACTCTTACCGATCCAAACT 1450273 36 100.0 34 .................................... ATGAACTCTTCATTAGGAGCATAGCGCTTGGCAA 1450203 36 100.0 40 .................................... TAAAAGACCGATGGAAGAAGGATTTCAGATGCGAAATGAA 1450127 36 100.0 36 .................................... AAGACCTAACGGGGTCTTATATCTCAGCAGACCTTC 1450055 36 100.0 38 .................................... CTCGTCGTCGACCGAGACAGCGACGACCATCAAGTATT 1449981 36 100.0 41 .................................... TGTTGACTGGAGTTTCCAGTCTTTTCATTGTGAAAGACGGT 1449904 36 100.0 38 .................................... ATACCCAACCTCTTGAAGCTCCTAAGCTTCCTAAAGAA 1449830 36 100.0 36 .................................... CTAACTTCAATCTTTTTGACCTCTCTCAATCCCCTA 1449758 36 100.0 37 .................................... CTAAATCTACCTCAAACCCATACACTGGAATATCCTT 1449685 36 100.0 39 .................................... GGCCAGAGAACTTGAACCTTTTTACCCGTCCGCTTTTCG 1449610 36 100.0 38 .................................... CTGCTTCCACTCAGTCTCCTCTAACGCTTCTGTTAAAT 1449536 36 100.0 35 .................................... AGGGATGATGGTTTGTTATGATATTCGATACGAAA 1449465 36 100.0 38 .................................... GCCCTCAACATAGAGAAGATGGCGATACTTCTTCTAAT 1449391 36 100.0 37 .................................... AGACCCCAAAGATCCAGATCAGTACCAATACTCTGCG 1449318 36 100.0 41 .................................... TTACCCATAATTGAGTGTTGAACCTCTTATTGTTTATTGTT 1449241 36 100.0 37 .................................... ATGAACAACAACGCTAACGAGGCTCAAATGATTAATA 1449168 36 100.0 38 .................................... GATATTAGGTGACGATATATAGTTTCGTCTTCCTCCCA 1449094 36 100.0 39 .................................... ATAGTGTGTTGCCATCCTGAAAGTCTACCGATGAACATA 1449019 36 100.0 35 .................................... GTGTGGGTGTCTTGTTGTACCAAGTGGTGGAAGAA 1448948 36 100.0 37 .................................... TTCCTTCCCTACCTAGCTTCCCAACTAGACTCTTTTG 1448875 36 100.0 36 .................................... CGCCTCGGATACGCTGCTTGGGAACGAGCTATAGAG 1448803 36 100.0 39 .................................... AGAGAAGTCGGGGAGCATTACGACGACTTGGGAGAGGCT 1448728 36 100.0 42 .................................... TCGATCTGGGTTATAGACCTTTTCCCACAGCTTAATAAAGGT 1448650 36 100.0 37 .................................... TTTTGTGGAAGAGCAACCTAACGAGCAGGTTCACACT 1448577 36 100.0 41 .................................... TTACGAGTTTCATTTGGATCTCTACCTAGAGTTCTTGAGAA 1448500 36 100.0 36 .................................... TGTAGCTTTAACGCTCAAAGCCCGTCGAGCTGTCTT 1448428 36 100.0 40 .................................... TAGGGGAGAGTCAAGTATCCTTCCAAGGAGTAGAGCTGTC 1448352 36 100.0 35 .................................... GGCAAGAATGGGTTGGATTCCATGGTTCTCTTCGG 1448281 36 100.0 40 .................................... TTGAGCTACTGTCCGATTCTGACGACTTTTATTCTCAGGA 1448205 36 100.0 39 .................................... CCCCCTTTCGAGGGGGCTGGCTTTTTTAAGTGACGGGTT 1448130 36 100.0 37 .................................... TTAAGTGACAAATTTAAGCCCAAGGAGGGCAATCAAA 1448057 36 100.0 45 .................................... CCAAGTCAGCCACCGTCTGGGAAGTGGATGAAGAAGAAATGACGA 1447976 36 100.0 37 .................................... AAATGATCCAAGACATTCTGACACTCACTATGAACGA 1447903 36 100.0 36 .................................... TAAAGGTATGGAAAAAGAAAGTCGTCCCAAAATTAA 1447831 36 100.0 38 .................................... TAGCTCGTATAAAGAAGAAGGGACGAGATGGCTTAGCT 1447757 36 100.0 36 .................................... GAAATCCTTACGGATTACCAACTTGCAGTGTATGAA 1447685 36 100.0 38 .................................... CTCCAACATAATGCCAAAGGCAAAGCTAAAGCTCAATT 1447611 36 100.0 38 .................................... TAGAGTAAATACTCGCATTGAGAAGGAGTTCTTTGGAG 1447537 36 100.0 39 .................................... ACAATGTTCACAGTAATCCCTCAAGGCAATTTCGTAGAG 1447462 36 100.0 40 .................................... TGGGAATATACATTTTAACTAAACTACCCCTCGTGGTAGT 1447386 36 100.0 36 .................................... GAAGAAGAGACAGAGGAAGAAGACCTAACTCTTCTC 1447314 36 100.0 36 .................................... CTGTATTTAATGGTCTTGTCTTACTCTTAAGTTTAG 1447242 36 100.0 39 .................................... CCTAAAAAGCGGAAAACCCCTACTCAAATCCCTGACTAA 1447167 36 100.0 39 .................................... TTAGGTTTCCCACTAGGAACGAGAGGATAGCGGCAGCGA 1447092 36 100.0 40 .................................... GAGTCTAAATTTGTAGAGTTTACTGATTTGGACATCGTTA 1447016 36 100.0 38 .................................... GAGGTGACAATTCCAAACCTTGAGCTCTCATTTGAGTT 1446942 36 100.0 37 .................................... TGAGTGGACGCCTGCCGTACCACTCGAAGAGGGAGAA 1446869 36 100.0 40 .................................... TATCGACCTCAGCCCATTATAGCTATGTGGTGAAAGTATT 1446793 36 100.0 42 .................................... AGTAATAGTCTACGTAGTCTTTGTATAAACTATTCTCTACAT 1446715 36 100.0 37 .................................... CTGTATTGCTACCTGGATCAGAAACAATATAAATGCC 1446642 36 100.0 41 .................................... AGAGAGGAGAAGGGTATTAGCTAGGTCTAAAAGCTCCCGTT 1446565 36 100.0 40 .................................... TACAGTGACACTTCTTTGATTCGAGAAGTGGGTTATAATG 1446489 36 100.0 39 .................................... TCTCTTCGCTACTAACGGTAAAGGTCAGCGAGTGACCGA 1446414 36 100.0 40 .................................... AACCAATGTGGGCAGACCCTCCGTTATCCTTGTTAGACTT 1446338 36 100.0 38 .................................... ACCTTTTGGGTCTAACCCCCGAGACTCAAGGGAGTCGA 1446264 36 100.0 36 .................................... TTGAAATATCTATGCACTTAAGGAGAGGGGCTGAAC 1446192 36 100.0 40 .................................... ACTTACCATGACCAATCAAACTTTCTCCAACAACCAAATG 1446116 36 100.0 48 .................................... GTTATGAATGAATCAGGCAAAGCAAAGACCCTCCGAGGGTTGTCTCAG 1446032 36 100.0 38 .................................... TGTATGATTGGGCTTTGAAAGAGTTCAAGAAATACCTC 1445958 36 100.0 38 .................................... ATTCCTGAAGATGAAGGAGTAGAGGAAGAACCTTCTAC 1445884 36 100.0 39 .................................... ACCGCATGGGGCACGACTGCTACTACTGTGGCAGTAACT 1445809 36 100.0 39 .................................... TCTTGGACATTGCGTTCAAAATCGACTTTTTATTCCAGA 1445734 36 100.0 40 .................................... AGCCTAAGACAACAAAAGACCCTGAAGAAGAGATTGCACG 1445658 36 100.0 33 .................................... CCCAAGAAGCTTTCTGGGGAGATGAGTTTCTAG 1445589 36 100.0 36 .................................... CAGGAAGCAATTTCCTTTAAGGCTCATCTCATCCAG 1445517 36 100.0 39 .................................... TCCATGGATTAACTGGAACCTTTCCAGCAGTAATTCCTA 1445442 36 100.0 41 .................................... TGCTCCCCATATTGGGTATGAGCTCCCAGAAGACACGCCCA 1445365 36 100.0 40 .................................... AAATACAGCAAGCCAATCGGCGATCTGAAGGAAAAGATTA 1445289 36 100.0 38 .................................... ATCTCGACAGTCGGGATAAAGTAAGACGAATCGAATGT 1445215 36 100.0 36 .................................... TTCGTTATCTCTTGCTCTCGCTCTGAGGACGAACAG 1445143 36 100.0 42 .................................... GAAGTCCTGTAAAGGAGTCGCCCATATGGGGCAGGGCTATCG 1445065 36 100.0 42 .................................... CACTTATGAACGTTATCCTTTACAGAGTCCGTTTCGGACGAA 1444987 36 100.0 35 .................................... CTGTATCAATAGTGTCAAACTCTCCGTCTTGAGAA 1444916 36 100.0 40 .................................... ACCTCTAAATAACGGTCTCTATATAAACAATACAACGCAT 1444840 36 100.0 40 .................................... CCCTTGAAAAGATTGCTGCTCACTACGGTAGTAAAGTAGA 1444764 36 100.0 41 .................................... ATCGAAGGCTTCTTCGTTCGCCTTTGCCACTTTGTCCGCTT 1444687 36 100.0 35 .................................... AGGTGATACAGTTCGTTTCTTACGGAAACGGGCGA 1444616 36 100.0 43 .................................... TACACTGTACGGGACAACTTCGTTCGGTGGAGCAGCCCTAAGG 1444537 36 100.0 35 .................................... ACCAAGCTGTACAAAACTGGGTGGACACTACAAAT 1444466 36 100.0 38 .................................... ATACGAAACACATAAGCTCCATGTTGACTTGGCAGACC 1444392 36 100.0 46 .................................... TTTCTTACCTCCTACAGGCTTAGGCAACGAACTTTAGTCCGTAGGA 1444310 36 100.0 40 .................................... GTAGGCGGTGAAAACCGCGGCGGAGGCACACGCTTAATAG 1444234 36 100.0 35 .................................... TTCGGACTTCTGCCATTTGCGTGGCAGAGAAAGGA 1444163 36 100.0 36 .................................... AACTCTTTCGATAACGAAGGTCGCCTCATTTACGAA 1444091 36 100.0 38 .................................... TAGAAGAAATAAATCAGTCTTTAAGACAACAAATTCCT 1444017 36 100.0 40 .................................... ACCGCGCGCCGTACTTCGTGTGGGAATGCTTCTCAGAGAC 1443941 36 100.0 39 .................................... AACTAAGCTTAGATAAGCCTGTAGGAGGTAAGAAAAAAG 1443866 36 100.0 36 .................................... AAGGTAGCTCAGTTGTCAACGATCGAGTTAGCAGAG 1443794 36 100.0 40 .................................... AAGAGGTTGAAAAGTCGTTCGACTTCTTCTGGTACGAATT 1443718 36 100.0 38 .................................... TCTCCTCCCGTGAGGAGCGTGACCAATATCTCGCCGCG 1443644 36 100.0 37 .................................... CTCGTCTATAAGACGAACTTCTATTCCAAGCGGAAGT 1443571 36 100.0 40 .................................... TAGCCACTACTGTCAATGGCCAAAGGATCTTATTCCTTAT 1443495 36 100.0 38 .................................... ACGCCTGAGCCAATTGGCTGATGAAGGCGGACTTAGAG 1443421 36 100.0 41 .................................... CCCAGAAGGAACGGGCAGCCCTATCACTATTTACTTTGGAG 1443344 36 100.0 38 .................................... TATGAGAGGGAATATATAACGCCTGAGGAGGTGAAAAC 1443270 36 100.0 37 .................................... CTGTCCGATTCTAATGATTTCTATTCTCAGGATGGAC 1443197 36 100.0 36 .................................... ATTTCTTGATGGGTATTCAATCACCTCGGAGGGACA 1443125 36 100.0 41 .................................... CAATACCACCTACAGTCACCTCGTTTGAGGTAGCAGTGGGG 1443048 36 100.0 39 .................................... CGCATCGACGATCATCCCGAGAATCTGGTTATCAGAGTT 1442973 36 100.0 37 .................................... TTCCCGCAGGGGATGCCCTCTGGCAAGACAACCCGAA 1442900 36 100.0 39 .................................... ATTCACAAGACTGCTAAAGGAGCAGTCCACCTCCTTAAA 1442825 36 100.0 37 .................................... TTCTTCGTCCTCTTCATAGAGGCGGGTTATGTTAGAG 1442752 36 100.0 36 .................................... TAAGTAACCAGCCTACTCCCACTACATCTTCCGAAT 1442680 36 100.0 39 .................................... ATCGGGTGCCCTGAGCATTCCAGACTGGAAGCATTATGA 1442605 36 100.0 43 .................................... GGCGCATAGCCGTCAATCGGTTCGTTTTCTTCTAGGCTAAAGT 1442526 36 100.0 40 .................................... ACCAAGCTATTTTACCTCTGTAATAAACACCAAATGCAAA 1442450 36 100.0 38 .................................... TCGCGGAAGTCGCCTCTCATACAGGGGATAAAGACTTG 1442376 36 100.0 35 .................................... CTTATGATGATCTAGAAAAAATGTTGAACTATTTT 1442305 36 100.0 40 .................................... CTGAAGCAATTGAATTAGCTTTGATGTATTCTTGATTGTT 1442229 36 100.0 41 .................................... TTAATGATTAACAGAAATGTTATAAGTGGTGTTAGACACTT 1442152 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 237 36 100.0 38 GTTTCCATTCAATTAGTTTCTCTTAGGAAAAGAGAC # Left flank : GGAGATGACTGATCTCTAACCCCGTTTGATTGTAATTGACAGCAGCAGTTAAACTACCAATTGCTGCGCGATCGCTGGCGGAACTGATAAAATCCGCTAAACGAATATGTTCAAAAAATTTTTTCTGTGCGTCTTCAGGATTCCAACCGTTTTCATGCCAGGTTTGTAAGGGCGGTAGATCGCGCCAAAAACTATTTCCACCCCGTCCTGAGTTGCTGTGGAGGGGTTTGAACACTGGGTCATGTAGCAATCCCCATAATTTGGCTTGCCAGTAAACTTCAGTCATAGGTTCCAATTTGATTGGCTATTTTGCTATTCTCTCACAATTAATTGTGAGCTTCTGTTGATTTAAGGAAGATTAAACAAACGCCAAAATACTGAGCAAGAGATGATTTTGGCGAGTTGCTTATCAATCCCTTTCTGTTCAGCCTATAACCAATTTCGGAAATTGCAACCCCTTTCTATGCGAACAGCGAATTTTTTTAATTTGAGAGTTTCCA # Right flank : CCTTCCAATTTTAACCCTTATGGTCACTGGATTTCAAATGCCATTTCCGAGGGGGTCTGTGAGTTAATTTATTTGCCATCAGATAATAATGTGTAAAATCGCTAAAATTCCCTGATAGCAAGCAACCGAGCGGGTAAACGGAAGAATCAAGGTTACAGCGATTCCCAGAGGCGATCATGAAAAAGTTGCTAGATTGGAACAATTAGAGGATACTGTAACCCCTCAGAGATTAACCATGAGTGAAATTACGTTATCTCACCTTAATCCTGATTTGCTGGAAAAGTTAGAAACCTTAGCAAAACAACATAATCGCACCCTTGAAGCGGAAATTGAAAGTATCTTAGAACAGCAACTGCAAGAAACTGAAATGATATTGTCTCCATCAGACTTTGAAACCGCATGGGAACAAGTGGATCAAGCTCGTCAACAGCATTCACAGCAGAGTTTTAGTGATAGCGTTGAACTATTGCGGGAGGATAGACAACGTTGATTCAATATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCTCTTAGGAAAAGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 2090436-2094051 **** Predicted by CRISPRDetect 2.4 *** >NC_019779.1 Halothece sp. PCC 7418, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2090436 37 100.0 34 ..................................... TTTTGATTCAGGCCCCGAGCCAAATCCCGATCCC 2090507 37 100.0 36 ..................................... TCTAACTAAAAATAATCATAACACATTCTTTTAAAA 2090580 37 100.0 34 ..................................... AAGCAATTTTATATTGCTCAGGAGTGCTAGGCAA 2090651 37 100.0 35 ..................................... AGGGAAATATACCAGATGGTAGCAGTAAGGTAGCA 2090723 37 100.0 34 ..................................... CTAAGATGACCGCAGTGGCGCAATAACAACTTCT 2090794 37 100.0 34 ..................................... CTTTTCAGTCTTGCGATCCTCGTAGTCATCAAAT 2090865 37 100.0 34 ..................................... ATTAAAAGAGGGGTTAAAAGTTGTTGGATTCAAT 2090936 37 100.0 34 ..................................... ACGGACTGAATATTACAAAACCATCGGGGCAAAG 2091007 37 100.0 33 ..................................... TTTTTCTGTGGTCAGAATAGCCTAAGTATTCTG 2091077 37 100.0 40 ..................................... GAAAGAAGAGCGCAACGACAACAGCAGTGACACCGCAACG 2091154 37 100.0 36 ..................................... TATTTTGTGGTTTCAGGATGAATCCTACCTAAAATC 2091227 37 100.0 37 ..................................... TTGCTCAAGTTTTGGCATCATTGTGTAGTCAAATACT 2091301 37 100.0 43 ..................................... AGGGAATTTTGTAATATCTTCTATGCCAAGATTTTCGTTGATA 2091381 37 100.0 36 ..................................... TAACATCTGCAATGGTTTCTTCTAGGAGTTCCCACT 2091454 37 100.0 38 ..................................... CCATCGCTTTGACTTTCATTCTACTAATGAAAAGGGAG 2091529 37 100.0 37 ..................................... CTGGTCGCAGTAATGAATATCCTCATTGGCTCTTAGA 2091603 37 100.0 34 ..................................... TTATTAATAGGTAAATAAGGTGGATCGAGATATA 2091674 37 100.0 37 ..................................... AAAAATAAGCCAGAACAACCGCTCCATGACACAGTTC 2091748 37 100.0 35 ..................................... TTTTCATAAACGAAAACCAAAGTACAAGAAATGCT 2091820 37 100.0 40 ..................................... GAGAAAAGCTGCGGATGGATTTTAGGCGGAGCTTGCCCAA 2091897 37 100.0 38 ..................................... CCGATATAAGATTTACTGGCTTTAGTTGCTCCTGTTCT 2091972 37 100.0 40 ..................................... ATCGACTCTCTGACTAGCGTTAATCTTCGCAGCACCTTCA 2092049 37 100.0 35 ..................................... TCCTTCCTAAAATGAGATATCTGTTAATCCTTTGT 2092121 37 100.0 34 ..................................... TGAGTATTCGGGCAACGCTCGAATATCATCCAGT 2092192 37 100.0 34 ..................................... TTTGAATAAAGTGTAAACTCTGTAAACTTAGGCG 2092263 37 100.0 35 ..................................... TTTTTGGTTGTGACAATTCTGAAGGGGGGTCAAGT 2092335 37 100.0 35 ..................................... GTTGTTTAGCGATATCTTCGCCTGATTGCTCCCAA 2092407 37 100.0 37 ..................................... GTCAACGCTTTACCAACTCGTTTGGCAGTTGACCAAA 2092481 37 100.0 32 ..................................... CCGCTAGTTGTCCCCTCGGCTATGGTTGCGGT 2092550 37 100.0 33 ..................................... GGTAAGTGTAATTGGGTCTTTATCATCATCTTC 2092620 37 100.0 37 ..................................... CTTATCATGAAGAAGAACATCTACACTAATTTAATGT 2092694 37 100.0 39 ..................................... TGGCATTTTCAATTTTCTGCTCTAGTGAATCCAGATCTG 2092770 37 100.0 36 ..................................... CATTTCCAGCATTGGCTCTCCCCCGATGGTAATTGC 2092843 37 100.0 34 ..................................... GCTGGGCTGACATTCCCCCGGAAAACAACCCAGA 2092914 37 100.0 41 ..................................... TATTAATTGCTTACGGTAGTCCTGATTACGGACTAAGCACA 2092992 37 100.0 42 ..................................... TTCTACAATTAGATAATTAGCAAGTTGCTACCAGTGACTACC 2093071 37 100.0 37 ..................................... TTACAGCAACTCGTAGAGGCGTACTGTGAAGGAGATA 2093145 37 100.0 36 ..................................... TTCCCCACCCTGAATATAAGCAGAATAAAAATACGG 2093218 37 100.0 36 ..................................... ATTAATCCCAGATACAGACGGCATTTTAACCTCCCA 2093291 37 100.0 34 ..................................... AAAACTACTCGCTGAGGAGTACCGTCGCTTAACA 2093362 37 100.0 36 ..................................... AGAGTATGGGGACCAGAAATAGCAAATACTTCAATG 2093435 37 100.0 37 ..................................... GTTAGGGTCGAAGGGATGCTCCCTAAACTCAAAAGCA 2093509 37 97.3 34 ....................................T AACGCTACTCAGCAACAAGTCCTTACTCTTATGA 2093580 37 97.3 35 ....................................T TATTACCCCAGTTATTGCGCTCTAAAGGAACAGGT 2093652 37 97.3 35 ....................................T CCTTTTTTTTGCCTCAGCTTCTAGTCGATCTTCCA 2093724 37 97.3 37 ....................................T CAAAAGTTAAATTATTGTTGTTGTGCGGGCTTTAAAC 2093798 37 100.0 33 ..................................... ACAGTGTTTACAGGTGGGCTTGTTGATGCCGAT 2093868 37 100.0 35 ..................................... ATAATTGTGATTACTATCCTTTTTATATGGCTATT 2093940 37 94.6 38 ............................CG....... TCAATTTAGTCCTACAAATAATGAGGATTAAAACAAGT 2094015 37 91.9 0 ...............CC...............A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 50 37 99.5 36 GTTTAAATCCCCGATTTTCAGGGGACTAAATTGAAAC # Left flank : CTTTCTCGATCATTTAGGCTTATCAGTGAAACCCACGTTTCAAGCAACCTCCGAAGGATTGGGGATGTATTTAGATGGGGAATTAGTTGTAGAAGCTCAATGTCAGCCTTGGGACAGATTTTGGCAATGGCAGTCTGCTCATTCTCATGGTAAGAAAGTGGGGCGAGTGGGATACAATGTGAAACTAACTTTTTCTCAAGCGGTTACATCTCCCATTGGTCTGGGTTATGCCTGTCATTATGGGTTAGGAACGTTGCTCCCGATTTAGGGAAAATTTGCGCGAAAGGGGTGCTGTGTAATGCGGAGTGAGTACGGATTGGTTAAAACCCTATTTCTGTAAAGGGCTTGAGCTTTTCTGTTTTTCAACCCATCGCGCACCAGTCAGGGCAAGGGTTTCAGCTAATTTGGCAAATTTAATTTTGAGAATCGGCTAAAATGATTAAGGATTCGCGCAACTGGACTTTGAAAACTAAATATGACAAGGGGTTCAGATGCAAGCT # Right flank : CAAACTGAGAGCAAATGCAGAAAGTTACAGCAGATCCCCCCTTCGCCCCTCTTAGTAAGGGGGGATGAGGGGATCGTTGTGTAGCACTAGTTGATCGAGAGGGTATAAATTAGGAGATGATTTTCTCGCAGTTGTTTACGTAAAACGAGGCAATGTAATTAGGATTATTAGTGCTAGGAGAGCCAAAAAATATGAGCGTAGAGCATACCAATCAAAATACTCGGATTTTAGCTAAGGACGTTTGGAAAGTAGAAGGTGAGACTGATTGGGAAAAAGTTAGAGCAATGACCGATGAAGACATCAACGCTGCTATTGCTGATGACCCTGACACGATTGATACCGATGAGACTTTCTGGGAAGATGCTGTGGCTAGTCCTCCCTTGACGTTTCTTGATCAGGAGGAGCAGTCTTGAAGAGTCAGTTGCTAATTGGGCAAACAAAGATTCGTTAGCGGATGCGTATTCTAAGCTACGGGCTTTTATGATTAAGCTGTTAAGCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCCCCGATTTTCAGGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //