Array 1 1656518-1648592 **** Predicted by CRISPRDetect 2.4 *** >NC_020247.1 Sulfolobus acidocaldarius Ron12/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1656517 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 1656455 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 1656399 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 1656336 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 1656278 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 1656217 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 1656151 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 1656091 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 1656028 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 1655969 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 1655909 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 1655850 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 1655791 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 1655731 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 1655670 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 1655609 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 1655550 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 1655492 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 1655430 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 1655371 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 1655313 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 1655254 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 1655194 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 1655135 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 1655076 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 1655017 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 1654957 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 1654897 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 1654837 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 1654777 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 1654719 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 1654661 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 1654603 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 1654544 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 1654485 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 1654424 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 1654366 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 1654307 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 1654248 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 1654189 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 1654130 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 1654070 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 1654007 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 1653948 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 1653890 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 1653833 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 1653769 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 1653711 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 1653653 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 1653595 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 1653537 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 1653478 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 1653419 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 1653358 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 1653297 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 1653237 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 1653178 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 1653118 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 1653058 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 1652993 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 1652933 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 1652873 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 1652815 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 1652756 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 1652698 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 1652639 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 1652579 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 1652519 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 1652457 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 1652395 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 1652336 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 1652278 24 100.0 36 ........................ ATCGGGCAGGTAGAAAGTCGCTAGGATCTCAGCGAT 1652218 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 1652159 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 1652097 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 1652038 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 1651979 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 1651915 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 1651857 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 1651796 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 1651736 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 1651675 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 1651617 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 1651557 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 1651496 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 1651436 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 1651377 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 1651319 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 1651258 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 1651198 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 1651137 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 1651079 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 1651018 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 1650961 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 1650902 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 1650840 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 1650779 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 1650718 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 1650658 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 1650599 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 1650539 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 1650476 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 1650417 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 1650358 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 1650295 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 1650233 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 1650175 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 1650116 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 1650057 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 1649997 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 1649936 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 1649874 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 1649813 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 1649752 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 1649691 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 1649630 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 1649572 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 1649513 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1649452 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 1649392 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 1649331 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 1649272 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 1649213 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 1649153 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 1649094 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1649033 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 1648975 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 1648916 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 1648855 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 1648794 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 1648734 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 1648675 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 1648615 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 133 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1668885-1673568 **** Predicted by CRISPRDetect 2.4 *** >NC_020247.1 Sulfolobus acidocaldarius Ron12/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 1668885 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1668945 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1669005 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1669063 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1669126 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1669184 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1669243 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1669303 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1669362 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1669420 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1669479 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1669539 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1669597 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1669659 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1669719 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1669777 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1669835 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1669898 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1669956 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1670016 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1670079 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1670140 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1670197 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1670257 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1670315 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1670377 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1670435 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1670495 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1670553 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1670616 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1670679 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1670740 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1670798 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1670859 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1670919 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1670981 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1671041 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1671100 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1671158 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1671218 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1671278 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1671337 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1671398 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1671457 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1671520 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1671579 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1671636 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1671694 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1671753 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1671813 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1671872 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1671930 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1671991 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1672052 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1672111 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1672170 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1672228 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1672287 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1672346 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1672405 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1672467 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1672527 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1672587 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1672646 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1672705 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1672766 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1672829 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1672890 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1672949 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673008 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673067 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673126 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673185 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1673244 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1673304 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1673364 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1673425 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1673485 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1673545 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1784609-1784330 **** Predicted by CRISPRDetect 2.4 *** >NC_020247.1 Sulfolobus acidocaldarius Ron12/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 1784608 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 1784546 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 1784485 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 1784419 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 1784355 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 1824652-1823994 **** Predicted by CRISPRDetect 2.4 *** >NC_020247.1 Sulfolobus acidocaldarius Ron12/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1824651 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 1824587 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 1824520 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 1824456 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 1824394 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 1824331 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 1824270 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 1824204 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 1824142 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 1824079 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 1824018 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : TTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //