Array 1 141961-140611 **** Predicted by CRISPRDetect 2.4 *** >NZ_LM997038.1 Escherichia coli strain FHI89 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141960 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 141899 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 141838 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 141777 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 141716 29 100.0 9 ............................. CGCCGANAA Deletion [141679] 141678 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 141617 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 141556 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 141495 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 141434 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 141373 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 141312 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 141251 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 141190 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 141128 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 141067 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 141006 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 140945 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 140884 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 140822 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 140761 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 140700 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 140639 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168790-167663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LM997038.1 Escherichia coli strain FHI89 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168789 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 168728 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 168667 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 168606 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 168545 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 168484 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 168423 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 168362 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 168301 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 168240 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 168179 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 168118 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 168057 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 167996 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 167935 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 167874 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 167813 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 167752 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 167691 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCTATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //