Array 1 2314864-2313857 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535610.1 Klebsiella pneumoniae MGH 36 addTk-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 2314863 28 100.0 33 ............................ TCCTATTTACACAGTACCTGGCGCGCCAGGCGA 2314802 28 100.0 33 ............................ TGTCGATAAAGTCGAGCTCGACGTCGACGCGCT 2314741 28 100.0 33 ............................ CAAAACCGAAGCGCTGTCACGCCTGAAAGAGCT 2314680 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 2314619 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 2314558 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 2314497 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 2314436 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 2314375 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 2314314 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 2314253 28 100.0 33 ............................ TTCTGAATAAATCAGCGCGTCATAGCCGTTATC 2314192 28 100.0 33 ............................ TCATACTCATTGGTGCAACACGGTATCCACGTA 2314131 28 100.0 33 ............................ CTCACCAGCTCTGCGGCCTTCTTGCGATACCGC 2314070 28 100.0 33 ............................ TAAATGAGGCTAACTGGACGCAGCGAGAGAACG 2314009 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 2313948 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 2313884 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 17 28 97.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCGGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCCCGTAGCGGGTTGTGTTTTCAGGCAATACGCATGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTACCAGGGCCATAGCCTCCGCAACCTGACCATCGTAGTCACGCAGCGTCAGTGAACCTCCGAACAGCTGTTTTACCCGGTACATCGCCGTTTCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2324071-2323616 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535610.1 Klebsiella pneumoniae MGH 36 addTk-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2324070 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 2324009 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 2323948 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 2323887 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 2323826 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 2323765 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 2323704 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 2323643 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //