Array 1 61-3476 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYDJ01000004.1 Flavobacterium bomense strain RB1N8 NODE_4_length_225100_cov_107.529600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 61 36 94.4 30 T...C............................... AAGCATTGAGTCCCTTACGTCTGAAACGGT AC,TTCCA [64,72] 134 36 100.0 30 .................................... TGCAAAAAACCAGTTGAAATGGTTTTTAAT 200 36 100.0 30 .................................... GCCTCATGTTGAGAATCGCGTAGTCCCACT 266 36 100.0 30 .................................... AAATCGGAATAGAAGAACAAGGGATTTAGG 332 36 100.0 30 .................................... GATAGCATTTGGCGTAGTTTTTGGGGTTCC 398 36 100.0 29 .................................... GTAAACGAAAATTTAACGATAAACTACTT 463 36 100.0 30 .................................... CCATCGAGAATCATTCCACCGTCCCGTTTC 529 36 100.0 30 .................................... CAATTCTGGCTCGTTTGAATTAGTTAAAAA 595 36 100.0 41 .................................... AACACGATATTCAATTCTGGCTCGTTTGAATTAGTTAAAAA 672 36 100.0 30 .................................... GTAGTAAACGGCACGAAAAATAGTTTAACA 738 36 100.0 30 .................................... CAATTCTGGCTCGTTTGAATTAGTTAAAAA 804 36 100.0 30 .................................... CGTCAATGATTATTAATCCAACATCTTTAA 870 36 100.0 30 .................................... AGTACTGCTTTTGTTGCTACAGCAGATGCG 936 36 100.0 30 .................................... AATTCCGCACAGGATTGCAATCACCCATAT 1002 36 100.0 30 .................................... GAAATTCATCGTAATTGATAGCATCATTCT 1068 36 100.0 30 .................................... TTTTGCTACTTCTTTTTTAAGAGCAGGTGG 1134 36 100.0 30 .................................... TCATTAGTAATAACTGAGCCCATTGGTTAT 1200 36 100.0 30 .................................... TGTTTATTGTTCCTTTTGTTTACTTTTAGC 1266 36 100.0 30 .................................... AAACGTCTGCTTTAACCTATGATCGTTTGC 1332 36 100.0 30 .................................... CTCCAGATTTACGATTACCGAAGCCAGTAC 1398 36 100.0 30 .................................... CTGTCGCGGGTTCGGTTCCCGCACAATCTC 1464 36 100.0 30 .................................... GATCGTATCCGAAGCCGTTATAGCTTTTAC 1530 36 100.0 29 .................................... CAATCCAAAACTTGCAAGTTCCCATTGTT 1595 36 100.0 30 .................................... GCAGGAGCTTTTGATGCAAGCCGTTAAAGC 1661 36 100.0 30 .................................... AATCCGTATGCGGTTAGGAACTCAATAATA 1727 36 100.0 30 .................................... AAAATAAAACGCGATGAATGAACCAACTAT 1793 36 100.0 29 .................................... ATTTTTAAGTATTAAATCAGTGATATAGG 1858 36 100.0 30 .................................... TATTAAAACATTCTCAAACGCATCAGGGGT 1924 36 100.0 30 .................................... ATTCTGACACCCTTAATAAGCGCCGTAATT 1990 36 100.0 30 .................................... CGGTTCAGTATCGGGGTATCGGTTCGTGCA 2056 36 100.0 30 .................................... GTTATTAGCTGTCGAGTTTGGATTTGTAGC 2122 36 100.0 30 .................................... GCGGAAAAGTTTAGACAAATCAGGGATGAT 2188 36 100.0 29 .................................... CTGGAGGAATTTAATGATTTGATTGACTT 2253 36 100.0 30 .................................... GTTGACTGTTTTCAATACAATTCAAGGTTG 2319 36 100.0 30 .................................... ATTTCCCTCTTTAGTGAGTGATAAACCCGC 2385 36 100.0 30 .................................... GAAAATCCAATTGATGAAAAATTGATCGCT 2451 36 100.0 30 .................................... GGATGGCTTTTGGTTGTCTCCACGCTAGGA 2517 36 100.0 30 .................................... AAAGCGGAACCTGAAAAGCTAATGAGTAGG 2583 36 100.0 30 .................................... AGGAGTTGGTGTGCTCAGGCAAACGTTATA 2649 36 100.0 30 .................................... CACATTAGTAGCTAAAGCGGCGGCAATAGC 2715 36 100.0 30 .................................... TTGCTATTGTTAAAAGTTGACGTTACCTCT 2781 36 100.0 30 .................................... TTTGCGGGGACAATTCTAAACTTTTCTGCG 2847 36 100.0 30 .................................... TTTACGAGAAGCTTTTAGCGGACTTGGCTC 2913 36 100.0 30 .................................... TCAAATCAATGGTTAGAAGTTACGGCTATG 2979 36 100.0 30 .................................... CAGGAAACGACAATGATGATTTGCCTTATT 3045 36 100.0 30 .................................... TGTTTATAAAATAGAAAACACCTCTTACAG 3111 36 100.0 30 .................................... AATACCGCCAGATCTATTTACCAATCAGCC 3177 36 100.0 30 .................................... CAAAAAACATTTCACCTGACTGCAATAGTT 3243 36 100.0 30 .................................... ACATAATTCAAGACGTTAAAGATGTAGTTA 3309 36 100.0 30 .................................... TTCGTGGCAGCGTTTAAAGAGGTGAAGTTA 3375 36 100.0 30 .................................... GTATGAATCATTAAAACAAAAAGTAATTAT 3441 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 52 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : ATAGGGTGGTCAGTTTACTCCGGAACTGGTGGTCAATTTGCACTGGAATTGGGTGGTCAAT # Right flank : TAGTTGGCTTGTTACCTTCTAATTATCAAAGGAATATGGGTGAATGTCGTATAAAAAAATGCCTCTTTTTTGGATTGATATCCCAATATTGAGGCATTTTTTTATTTCTATCAATAAAAATTCGATAAATGGTAGTAGAATCATAGTAAGAGGCAAGATTCAATGATTAATTTTTAGTGCAATCTGCAGGGACAGGTCGCGACCTGTCCGTACGTTATCCAAATGCAATAGGTATTGGGGATTATCCGCAAAATAATTTATATTTCGTTACGATTTGTGTGCAAGATAGAAAATGTTGTTTTGGGAATGTGAATTGGGCAGGGACAGGTCGCGACCTGTCCGTACACTAATTATGAAAAAGAAAAAATAATGAAAAATAGAAAGCGAAATAGAATGCTGGGATATGATTATTCGCAAAATAATTTATATTTCGTTACGATTTGTGTGCAAGATAGAAAATGTTGTTTTGGGAATGTTAATACGGCAGGAACAGGTCGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 227-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYDJ01000006.1 Flavobacterium bomense strain RB1N8 NODE_6_length_172078_cov_109.777118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 226 36 100.0 30 .................................... TAGTCACGAGCCTAAAGATAAAAATATCAT 160 36 100.0 30 .................................... ATATAAATATATCGTTGCCGATTATAACGG 94 36 63.9 0 ..................TGC.A.TTC..GTGATA. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 88.0 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TATTTAATCAAGCAAGCTCGTGATCGAGATGAGTATGTTGAATTTGTTCGAATGAAGTTAGATAGAGCTGAAAAAAGCGGATTTAGCACCAAAACAAAAGAGGAATTATTAGCAGAAATTAAGAAAAAACTAAATGTTTAGTTATAAACTTAATATACAAGCAGGGAAGATTTGACTCGAATTTTTGAATATGGAATTGGTCGTTTCGGATTTCTTCAAGTTAATAAATATTATGAAATGTTTTTTGATTGCTTTTCAAAAATCGCATCAAATCCATATCTATTTCCTGAAGCTATTCGTTTTCGTCAAGGTTATAGATATTGTATTTGTGGAGTGGATACTATTTTTATAAAATTAATGCCAATGAAATAGAAATAATGGCAATTATAGGAAGACAAGATTTTTAAAGGTTCTTTGACATACAGTTTTTCATTGTCTTAAACAGCCAAACCACAACTGAAAGGTATGGCATCCGCCCAGCAGGGATGCAGTAGCTTTCA # Right flank : TTGACCACCCAATTCCAATTTAAAGTGAGCACCTGATTCCAATTCAAAATGACCACCTA # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTGGAAACAACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //