Array 1 40173-39899 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000041.1 Kitasatospora griseola strain JCM 3339 sequence041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40172 29 100.0 32 ............................. CGGGCCTTCGCCGCGGCCTTCTCCTCGGCGCT 40111 29 100.0 32 ............................. CTTGACGCCCCATCCCGATGGTCCAAGGGAAG 40050 29 100.0 32 ............................. CCGCCGTGCTGTGGGCGCTGGTCCGGCACGCC 39989 29 100.0 32 ............................. ACCATGACCGACCCCGTCCGCACCGCCTACGA 39928 29 93.1 0 .....................G.C..... | T [39903] ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : TCCGACCACGGGCAACACGTTGCCGCAGGAGTCAACTACGGAGAGGGCAACTGGTGACAGTCATCGTCCTCACCAACTGTCCCGTCGGACTGCGGGGCTTGCTCACCCGCTGGCTCCTCGAAATCTCCGCCGGAGTTTTCATCGGCTCCCCATCCGCACGGGTACGGGACGTTCTGTGGGCAGAAGTCCGGCAGCACGCGGGCCAAGGCCGGGCTCTCCTGATCCACACTTCGAACACCGAGCAGGGCTTCACCTTCCACACCCACGACCACGCCTGGAAACCTGTGGACCACGAAGGCCTCACCCTCATCCACCGGCCGAACACCAACTCAACCTCGGTGTCCAGTCCCCCTAAGCAAGGCTGGAGCACTGCGTCCAAGCTACGCCGCTTCGGACGATGAATCACAGTAGGGCATTTTGGGCAGAAAAGCCTTTATGTCCGAATCTATTAAAGTTGCATTCCGGCGCCAAACCGACAGGTAAACCCGCAGGTCATCAAG # Right flank : GGGGCCGAGCCAGCGGCGGGCGGCCATGCGGGGCTGGGTACAGTCGAGGAGGTGCTCGACCGCGCGGTGCGGGGCGGACAGTGGTCGATCGTCCGCTTCGCGCTGCGGGCGCTGCGGCAGTTCGGGTCGGCGGCGGCGTCTGCCCGGTCGGCGATTCGTGCGCTGGCGTCCCCCGGCGGGCTGGGGGACGCTGAGACGGCGCTCGCCGCGGTCACCGCGCTCTGCGCGGTCGGTGCCGACCCGGACGAGGTCCTGCCGCTGCTGCCGCCCGGGCTGGATGGCGACGGCGGGCCGTTCAGGGCCGGCGACATCGACGGCGTCGCGAGCCTGCTCGGCGCGATCGGCGCCGGGCGCAGCCAGGTCAGGGCGTGCACCGCGCCTTCGTGGTTGTCCAGGCGCGGTCTCCTCGCCGGCGCGAAGGCGGGTCTCCGAGGCCGGTAGAGAGCAGCGGCGACGTGCCGCGGCGGGGCTGGCTGTGGCGGTCCGCGGCCAGGATTCTG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52478-52874 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000041.1 Kitasatospora griseola strain JCM 3339 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52478 29 82.8 33 .C..........TAT.............G CACGCGGCCTGAGCGTCTTCCCGCTCATCCGAA 52540 29 89.7 32 ...........A.G...........T... GACGCGTTCGACGGCATCACCCGGATCCAGCA 52601 29 100.0 32 ............................. ACCAGACTCGGGGCCTAGACCAACCAACCTGC 52662 29 100.0 33 ............................. GCAGGTCAAAGCATTGGTGGGCCCCGTTGCCCG 52724 29 96.6 32 .........................T... TGCTGCGACGCGTCGTTGCCGCCGAGGACGCC 52785 29 89.7 32 ...........A.G...........T... GTGCCCTTCAGTGGCAGCTCGAATCAGTTCTC 52846 29 72.4 0 ...........A.A.......G.C.TGAA | ========== ====== ====== ====== ============================= ================================= ================== 7 29 90.2 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : AGTTCACCGTCGGGGCCGGACTGCTCGAGGAGGTCCTGGCCTCGCTGCGCGCTGGCCTGAAGGCTGTCAGCGATGCCCTGCCAGTGGGCGAACACGGCCAGGAGTTCGTGGGCGGGGGCGCGGTTGATCTCCGCGAGGAACCTGTGCCGCACCGCCGGCGCACCCAGCGACTCGCTAATGCGTTCGATCGTCCATGGTTCGCTCATTCTTGCCTCCAAGCCACAAGGACGGGCAGAACACCCCCGCGCCGACAGCCTGTCAACGAGAGGAACACTCCGGGACCCCCGCGATCACACACGGTCTGGAACCGTGTACTACACCAGCACCGTAGCGCATTCTGTGCATACCACCACGACAAATCCGACAGTCCAGCCCGACACCACCTACTCACGTGAGTACGTGGTCCATGGCAGCCCCGACGATGCTGGCGGACCGGTACTGCAGCCCCGCCCTCATGAGAATGATCCATACCGTAAGGAGGAAGTACTGGTCCTGCTCAA # Right flank : AACCGAAGTAGGTCAGTGGGCCCGGGTGGACCCCGCGCCCGGTACTTCTCAACGGGGATCGGTGTGGCGTCGTCGCGCATGCGGTCGGTGTACAAGAGGCCGTTGCGGTGGTCGATCTCGTGGGCGACAAGGCGGGCGAGGCCGAGCTCGTACACCACGGTTGTCACCCTGCCGTCGATGCTCGCGGAGGTGACGTCCATTCGCAGGGGACGGGGGACCAGGCCGCGGACGTCGAAGAAGCTCAAGCAGCCCTCGTACTGCTCGTCGGACTCCTCGGAGGCGTCGGCGACACGGGGGTTGAGCAGGATGATCGGGGCGGCGTCCGGGTTCGGAGGGAGGACGAGGGCGGCGGCGCGGTCGACTGTAGGCAGGGCCACCGCGCTGGGCGCCGGGGAGTCGCTGTCGCTGGAGCGGCTCACTCTGCCGTTCCAGGTCGTCTGACGCCCCCGCCGCGCTGACGGCCCCCGGGACGGGCCGGGCGGTCACTGCGGTGCGCTCGG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 57236-58114 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000041.1 Kitasatospora griseola strain JCM 3339 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 57236 29 100.0 32 ............................. GCCATCGTGAAGAACCCCAACACCCAGGCTGC 57297 29 96.6 32 ............................T TCGCCCGCAGGGGTGTGCCATTGGGCCAGGTT 57358 29 100.0 32 ............................. GAGCGCGGTGAGGCCGTTGCTCTCGACATGCG 57419 29 100.0 32 ............................. GAGCGCGGTGAGGCCGTTGCTCTCGACATGCG 57480 29 100.0 32 ............................. TCGTCCAGGACGACTGCGATGTACGGCATGGT 57541 29 100.0 32 ............................. ATGAGCCAGCTCGCCGACGAGTTCGAGGTCGA 57602 29 96.6 28 ........................G.... TCGCCGGCGCTTCGCGCAGCAACGTGCT 57663 29 96.6 32 .........................C... TCGGCGCCACCCACGACGACATCGCCGACGAA 57724 29 82.8 80 ...........G.C........C.GC... CAGCTCGATGGCACCGAGGCGACGGCCTGATCTGCTCCCTGCGCCCGCAAGGATGAGACGGACCACAACCAGAGCACCGC 57833 29 82.8 32 ...........G.CT.T.......G.... GGCTGCTCTACGTGCCGCCGGCGCTGCAGAGG 57894 29 69.0 163 ..........TG.A......CG.CG.A.T GCCGTGGGAGCATCCATCCACGCGTCACTGCTCCTTGACACCTTCACCGCATCGCTGACCCGGAGGGCGACGCCCCCGGTAGGGAAGAAAGCCGTTTATGTCCGAATTTCAGAAAGTGGCGGATTCTCGTACCACTCGCGCATAACGCCTCAGGTCAACAAGA 58086 29 93.1 0 .............C..........G.... | ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 12 29 93.1 48 CTGCTCCCCGCACGCGCGGGGATGATCCC # Left flank : CCCGGCGGGTCGTGCGGTCGGTGCCAGTGAAGCCCATCGCGACGATCTTCTTGTGAACAGCGTCGGCCCCGACCCTGCTCCGGGACCGCTCGACAAGCTCCTCGACCTTCGGCAGGAAGCCGTCGATCAGCTTCGACCGCACGGCCCGCTCGGTCGGGTCGACCCCCTGGCCCCGGAGCTGGACATAGCGCCGCACCGTGTGGTGGTCGCACCCGGCCAGCTCGGCCGCCTTCCGGTAACTCCCCGTGAGGTCATACGCCTCAAGAATCTCCATGATCTCCTCATCGCTCTTCACCCCGCCCACTCTGCGTTATGGGCTTAGCGGGTCAGCGGGGAGATCAGCTGTCCGTCACCGGGGAGGTCTCGTGTCCGCCAGCGGGGAGGCCAACCGACCGCCGTTGGGGAGTCTGCCGCGTCCGCTGACAATGCCGCTTATGCCTGAATTCCTGGAAGTAGCTCATTTCCGAGTCGACGGCGTCTAGAGTCCCAGGTCAACAAGG # Right flank : CCACAGCTCGGCGATCCCCCAGCACGCCGCGCGCCCGAGCCGAGCCCGAGACCCGAGGACTATTCGATCGTGAATCGGTAGACCCTCGAGTCCCGGGCTTGGAAACCAGCCCGTTCGTAGAGACGATTCGCAGCATCGCGCGATGGGCGGGACGTCGGGTCGACGGTTCGAGCGCCTGCGTCCTTCGCCAGTCGGAGTGCGGCATCGGTCAAGGCCCCGCCGACTCCGTGGCCACGCGCGGCGGCATCGACAACGACGTCCTCGATGCGCGCCCGCAGGCCGGACGGCAGCGGGGACAGGACCAACGTCAGCGCGCCCACGATCGCTCCGTCGAGCCGGGCGATCAGCAGCGTAGTGGCGTCGGTAGCGTGTGAGTGAGGGCCCGGGTCGTCTCCCTGACAAGTCGCGGTCGGGGCCTCACCCTGGATGTGTCGGAGGGGCTGGACCCGTGGGGTCCAGCCCCTCCGGCTATAGCAGCAAATTGGACAGCGAGACTCGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 62404-63516 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000041.1 Kitasatospora griseola strain JCM 3339 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 62404 29 72.4 32 G.C..T.......GA......C..GT... CGCGCGAAAACGTGCCATCCGACATGCGTGCG 62465 29 65.5 203 ...........CAA......CG.CGTA.T GCCGTGGGAGCATCCACCCACGCACTACTGCTCGTTGACACCTTCACAGCACAATCGAAGGACGGCGCCATCGCGCTCGAACGGCACCGGCCGCGAGTCGGCTGCACCGGAAGCATCCACAAGGAGAGATATCGCGTACGTCCGAATCTCTGAAAGTGGGTCACTTCCCGGTCGACGGCACGTAACACCGCAGGTCAACGAGT 62697 29 93.1 32 ...................A....T.... CAGGTCCTGGAGCTGCCGCAGCGCCGGGCCGA G [62720] 62759 29 89.7 32 .....T.T...A................. GTCTGATGGGAGCCGACACCATGACCAAGAAG 62820 29 100.0 32 ............................. CTGCTCATGTCCGAGGCGCTCGCCGCCCTCCA 62881 29 100.0 32 ............................. ATGGAGCGGCGCCTGGACCGGCTGCAGCACAG 62942 29 89.7 32 ..............T.........GT... ACCAAGACCGGCGCGATGGAGGAGATGCTTTG 63003 29 82.8 32 ...........A.G....A.....GT... GACCGGCACACCGACCTGTACCGTGAGCAGGT 63064 29 82.8 32 ..........T...T....A....GT... GCGTAGGGGATGCGGGTGACGATCACGAGGGC 63125 29 96.6 32 ........................G.... TCGCCTGCGCTGCGCCGGGCCTCGGCCAGCTG 63186 29 86.2 32 ........................GT.TT GATGATGAGCCCGGGGGTTTTGCGGCCCTGCC 63247 29 82.8 32 ..........TA.G..........GT... GCCAGCGCTGCCAACCCGATCAGCTGGGCCGC 63308 29 89.7 31 ...........A.G..........T.... CCAGCCCCTCGAGCGACGAAGGGCGGCGGTT G [63331] 63369 29 93.1 31 .............G..........G.... CGCAGGCGCGGGGAGCAGACCACCAGCGGTG 63429 29 93.1 32 ........................GT... TGCGCCGCCACCGCGACGGCGACCACCCGATC 63490 27 79.3 0 ............--.........CGT.T. | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 16 29 87.3 43 CTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : GCGACCGCGGAGTCTTCCGGGATGTCGCCCCCGAGGACGACCTGGAGTGCTTCGGGTGACTGGCAGGTCCGAGCGATCAGGCTCCAGTCGACGGATTTGCTGCCTGCTCGCAGTGCGCAGATGGTCAGCAGCTCCTGCTGCTGGGGTGTTGCGGTCATGTTGAGTCCTTCTACTCACGGCCCCGGGGTGTTCGAAGGGTGGTGCTCGATCTCTGTGGGCCGCTTCCCATCATGGCGTATGCCCGATCAGGTCCGCACGGCTCGCACGCAACTGCTCGGAGATGTCCGGTTCACCCGGGTCGGGGGACCAGGGCGTGCCTGGCGGAGCCGGGAGAGGACGACGCGTAGCGGCGCCGGTCGCCGCCGGCTGACCGCAGGCGGACGAAGACGACGACGCCCAGGTGGATCCGCGAGTCCCCGACACCCGTGCGGCCGCCGAGAAGTGGCAGCGGCGGGCCCACATCGGGATCGCCCGACCTTGCCTCGCGCATCACGGCTGAG # Right flank : CGGCGTCAGCAGACCGTCGGGCGCCTCGGCCGGCTAATCCCCGCGCACGTGGGCGTCGTACTGTCGTGGGAGCATCCACCCACGCGCAACTGCCCTTTGACACCTTCACAGCACAACCGAAGGGCGGTGCCATCGGCTCGAGCGGCACAAGTCGCGGGCCGGCCGCACCGGAAGCATCCACAAGGAGAGAAAGGTCGCTTATGTCCGACTCTCTGAAAGTGGGTCATTTCCCGGTCGACGGCGCGTAACACCGCAGGTCAACGAGTCTTCTCCCCGCGCCCGCGGAGATGGTCCCGCGGCAACATCGCCGAGTTCCTGCGGCAGGCGGAGCCGCTCACCTCGCACATCCAGCGCACGTTTCGGCCCTGTCTGCTCTGCCCGGAGACCCCGGCCCGGAGCAAGGAGGGGCTGTGCTTTCTGCACTCGCGTCGCTTCGTCAGCTACCGCAAGGTCCGCCGGCAGGCGGGCAGGCCGGTGGACTTGGACGTCTGGCTGGCCAC # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:-1.10, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 47-382 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000049.1 Kitasatospora griseola strain JCM 3339 sequence049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 47 29 96.6 32 ........................A.... CGGGCAACGCCGAGGACTGCCCGCAGTGCTGC 108 29 100.0 32 ............................. CGGTACGGGATCGGCTCGGTGCGGCGGCCGGA 169 29 100.0 32 ............................. ACCCCGGCCACCCAGCCCGTCCCCGCCAGCCG 230 29 86.2 34 ...........A.A...........T..T ATGCCGCGCTTCCGGGCCTGCTGGGCCACCGCGA 293 28 86.2 32 ..-A.......A.G............... TCCGCTCAGCTGAAGGGCGTGCCGGCGACCGC 353 29 89.7 0 ......................C..T.G. | G [370] ========== ====== ====== ====== ============================= ================================== ================== 6 29 93.1 33 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : GCGGGGATGACCCCAGGCCGGGCTGAGCGACATCTACCCGCGCACCC # Right flank : CGCCGTCAGCAGAGCGCCGGGCGCCTCGGCCGACCGCTCCCCGTATGCGCGGGCGTCGTGCTGTCGTGGAGCATCCAGCCACGCCCTACCGCCCGTTGACGCCTTCACAACGCAGTCGAAGGGCGGCGCCACCGTGCTCGAGCGGTGCCGACCACAGGCTGGCCCGCACTGGAAGCGCCCAGAAAGAGTGAAAGATTGCTTATGTCCGATTCGCTGAAAGTGGGTCATTTCCCGCTCGACGGCGCGTAACACCGCAGGCCAGCGAGTCTGCTCCCCGTACACGCGGGGGTGGTCCTGCCCGAAGGCCCGGCAGCCCGCACGATCGTCGCTGCTCTCCGTACACGCGGGGATGGTCCCGGCATCGCCTGGTGGATCCGCCCGGTGCTGTGCTGCTCCCCGCACGCGCGGGGAGGCTTCCAGCGTGGGTGGCGGCTCACCATCATCAACGGCTGCTCCCCGCACGCGCGGGGATGGTCCCCAGGCGTGATTGTTGCCGCCGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 649-1894 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000049.1 Kitasatospora griseola strain JCM 3339 sequence049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 649 29 79.3 32 ..........TA.A.......G...T..T GCCCGAAGGCCCGGCAGCCCGCACGATCGTCG 710 29 82.8 32 ......T...TA.A...........T... GGCATCGCCTGGTGGATCCGCCCGGTGCTGTG 771 28 86.2 31 ...........A.G........-...T.. AGCGTGGGTGGCGGCTCACCATCATCAACGG T [797] 831 29 93.1 31 ...........A.G............... AGGCGTGATTGTTGCCGCCGGGCCGCCCCAC T [856] 892 29 96.6 32 .........................T... AGCGCGCGCCCCTGTCTGGCGACCTCGCGCTC 953 29 86.2 32 ...........A.G..........AT... ACGTGCAGGCCGTGGTTGGCGCCGCGCTTGGT 1014 29 89.7 31 ...........A.G..........T.... TCTTCAAGGCCGCGCTGCTCGAAGTTGGCCC A [1038] 1075 29 89.7 32 ...........A.G...........T... TGCAGAAGATGATCGCCGAAGCGAAAGCTCAG 1136 29 93.1 32 ...........A.G............... CTCACCCGAGCCGCCGGGCCTTGAAGGTGCCG 1197 29 100.0 32 ............................. ATGCCGCGCACGATCGTGGGGGCGTTGATCTC 1258 29 100.0 32 ............................. TTGAGCGGCGCAGTGCGCTATCACATCAACAA 1319 29 100.0 32 ............................. TTGAGCGGCGCAGTGCGCTATCACATCAACAA 1380 29 96.6 32 .................A........... GGCGGGCGGACCGCGCGGCCGTGCGAGACCGA 1441 29 96.6 32 ...T......................... GGACACGGCCAGCAGTGGCCGCCTGGATGGAT 1502 29 96.6 32 .....T....................... CGTCTCGCGCGCGAGTGGAGTTCACTCGGATC 1563 29 93.1 32 ...T..........T.............. CACCGGCACTTGCTCGCGGTCATGACCGACCC 1624 29 100.0 32 ............................. GGCTTCCGGACGTGGTCGCGGCGTGGCGCGGA 1685 29 100.0 31 ............................. ATCATCAGATCGTGGCCGTCGCGTACGTCGG T [1710] 1746 28 89.7 31 .....-.......A.A............. CGCCGGGCCTACTGGTCGCCGACTACCTGCA T [1771] 1806 29 82.8 32 ...........A.G.A........AT... TTCTCCAGCGCGGCCGCCGGATTGTTGTCGAT 1867 28 86.2 0 ..............T..-.......T.G. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 92.3 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : GGCTCGGTGCGGCGGCCGGACTGCTCCCCGCGCCCGCGGGGATGGCCCCACCCCGGCCACCCAGCCCGTCCCCGCCAGCCGCTGCTCCCCGCACACGCGGGGATGGTCCTATGCCGCGCTTCCGGGCCTGCTGGGCCACCGCGACTATCCCCGCACGCGCGGGGATGGCCCCTCCGCTCAGCTGAAGGGCGTGCCGGCGACCGCCTGCTCCCCGCGCCCGCGGGGGACGGTCGCGCCGTCAGCAGAGCGCCGGGCGCCTCGGCCGACCGCTCCCCGTATGCGCGGGCGTCGTGCTGTCGTGGAGCATCCAGCCACGCCCTACCGCCCGTTGACGCCTTCACAACGCAGTCGAAGGGCGGCGCCACCGTGCTCGAGCGGTGCCGACCACAGGCTGGCCCGCACTGGAAGCGCCCAGAAAGAGTGAAAGATTGCTTATGTCCGATTCGCTGAAAGTGGGTCATTTCCCGCTCGACGGCGCGTAACACCGCAGGCCAGCGAGT # Right flank : CGGGCTTTCGGTGCAACACCAACTGCTCCCTGCTCGCGGGGGGGCTGATGGTGTCGCAACTGGGGCAGCGGTCGCCCTTCCCGCGCCGTCCCTGGCCAAGGTGGCACGGTCTTGTGTCCGGCCCGGGGTGCGCGCCACGATGATGGTTTCGTTGCGTGAGAGGGGATCGACGATGGGTGACGAGAGCAAGGGTGGGGCGCAGGACGGTGGGGGCGGGGCGCATGCGAAGCCGGGTGGTCCGGCGATCGGGCCGAAGCCGAGTCCGGACGGGCAGGGCCCGGTGCCGGACCCGAAGCACAAGAAGTGAGCGGCGACGTGGCGGTGGGTGCCCGGGTGGCGCTGGCCGATCGGCTCGCGAGTGAGGGTGTGCTGGATGCCGGATGGCGGTCGGCGTTCGAGGCCGTCCCGCGGCATCTGTTCCTGCCGTCGGTGTACTGGGAGTTCGTTGACGGCGTGGCGGTGCGGCGCGACCAGGACGCGGACCCGGAAGGGTGGTTGGC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3408-6915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000049.1 Kitasatospora griseola strain JCM 3339 sequence049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 3408 28 79.3 31 .....-.....CTGT..........T... AGGTCGTCCCAGTGGCAGGGTGTTGAGGAGA 3467 29 89.7 31 ........T....GG.............. GGCCGATCTCGGCCAGGTGCTCGCCGTCGAA T [3492] 3528 29 82.8 32 ...........AAG..........AT... ATGAGCCAGCTCGCCGGCGAGTTCGAGGTCGA 3589 29 86.2 32 ..........TA.G...........T... GTCAGCGTGCTCTGGGGCTTCGCGGTGCCCTC 3650 28 93.1 32 .....-..................A.... GCAGCCTGCTCGTCCTGCTCGACGAAGCCGAC 3710 29 93.1 32 .....T...................T... CGGAGGGACTGGCCGTGCTCGGCGGTGAACCG 3771 29 100.0 32 ............................. TCCTCGGCGGTCTTCGCGCCGGACAGCTTGGT 3832 29 93.1 32 ..............T.............T TTCCACCGCATGCGGGAGAAGGCGTTGGACCT 3893 29 96.6 32 ..............T.............. GGGCCGACGGCCAGCGTCGCCCGCAGGCCGAT 3954 29 89.7 32 ..........T..A...........T... ACGTGGTAAGCGGTCTGAGCCTCGATCACCCG 4015 29 100.0 45 ............................. ACCTGCCGGGCTTCGCCAGCGGCGAGGCCTACGCACAGGCACTGC T [4040] 4090 29 96.6 32 ..............T.............. TGTGGGCGGCGACCGCGTGTTGAGCAGGGTGC 4151 29 96.6 31 ..............T.............. CCACCATCCACGACAGCCGAGAGGCCGCCGA 4211 29 93.1 32 ..............T.............T ATCCGCTCCGCCCGGCTGGTCGAGGTCTTCCA 4272 29 100.0 32 ............................. TTGAGCGGCGCAGTGCGCTATCACATCAACAA 4333 29 100.0 32 ............................. TTGAGCGGCGCAGTGCGCTATCACATCAACAA 4394 29 100.0 32 ............................. GAGCCGGTCAGCAGCTTCTCGCCGTACGCGGT 4455 29 100.0 32 ............................. TACAACTCCGGCGACACTCCGCCACCACTTCC 4516 29 100.0 32 ............................. TGCGGGGTGAAGCCCATCGCGGGCGACATCAC 4577 29 100.0 32 ............................. ACGCCGCGCACGGTGACGGGGGCGGCGATCTC 4638 29 100.0 32 ............................. ACGCCGCGCACGGTGACGGGGGCGGCGATCTC 4699 29 100.0 31 ............................. CGTGGCAGGACCAATACCAGGGGCTCCAGAA T [4724] 4760 29 96.6 32 .........................T... GTGCCAGCGGCCGCGGCCACGAGCAGGCCGTC 4821 29 100.0 31 ............................. CAGGCCCAAGCTCCGCCGAGGGCCATTCCCG T [4846] 4882 29 82.8 32 ...........A.G....A..C...T... CGCGCGGAAGCGTGCCATCCGACATGCGTGCG 4943 28 69.0 205 ...........CAA....-..C.C.TA.T GCCGTGGGAGCATCCACCCACGTACTACTGCTCGTTGACACCTTCACAGCACAACCGAAGGACGGCGTCATCGCGCTCGAGCGGCGCCGACCACGGGCCGGCTGCACCGGAAGCATCCACAAAGAGAGAAAGGTCGCTTATGTCCGAATCTCTGAAAGTGGGTCATTTCCTGGTCGACGGCGCGTAACACCGCAGGTCAACGAGT G [4965] 5177 29 89.7 32 ...........A.G...........T... GGTCAGGCATCGCGGACGATGGCCTAGGTCAC 5238 29 89.7 32 ...........A.G...........T... TCGCCGCGCACGACCAGGACGTCGCCGGCGAG 5299 29 89.7 32 ...........A.G...........T... TTCGGAGCTTCGGGAAGGTGGTCGAGGTGCAC 5360 29 89.7 32 ...........A.G...........T... TTACACACGCTGTCCCGAAGTAGCAACCTGAA 5421 29 89.7 32 ...........A.G...........T... GGCAGGGAACTGGACATCACGACCGAGAAGGG 5482 29 89.7 32 ...........A.G...........T... CAGATCGTCAGCAGGGTCAGGCCGTGGGCGAG 5543 29 93.1 32 .........T...............T... TCGGTGCCGTCGTCGGTGGCGGGGTACAGCGG 5604 29 93.1 32 ..............T..........T... AGGCTGCCGATGCCGTTGGAGCGGCTGCTGCC 5665 29 96.6 32 .........................T... GACGCACGGTGCGATGAGCACGTGGAGGTCGA 5726 29 96.6 32 .........................T... CAGGGCGACACGGCGGCCGGGTGGGTGGTGGC 5787 29 96.6 32 .........................T... CGGGCCGATGTGGTGCCAGTGGTCGCCGATCA 5848 29 96.6 32 .........................T... TCGACCGCGTCCGGCCGGTCCGGGTCGAAGGG 5909 29 93.1 32 ..................A......T... CAGTTGCGATGGCTGGGCACGTACGCGAATCG 5970 29 93.1 32 .....................G...T... GCGGCTGTCAGCCACCTTGGCACCTCTCAGAA 6031 29 96.6 32 ........................A.... GACCGAACTCGCCCCCGGACCCTCACTGGCGT 6092 29 93.1 32 ...........A.............T... TCCCAGCAGGGAGCCGGGGCGGCCGGGTCGGC G [6094] 6154 29 96.6 32 .........................T... TACACCGGCTGGCAGAAGTCCCTGGGCTACAC 6215 29 86.2 32 ...........A.G..........AT... ACCGCGGGCGGGTCGCCGGCGACTGGGAGGTA 6276 29 82.8 32 G..T.T...........A.......T... GACTGGATACACAGCGGGCGGCCCAACTTTGG 6337 29 89.7 32 ...TC....................T... GCCACCCTGACCGGTACGACCCAGCCGGGCGA C [6339] 6399 29 96.6 32 .........................T... TGCTCCAGGTCCGCCAGCGGGATCGACGAGCC 6460 29 93.1 32 .....T...................T... TGCTCCAGGTCCGCCAGCGGGATCGACGAGCC 6521 29 96.6 32 .....T....................... ACGCACAGCTCGGACTTGGTGATGCTCTTGGC 6582 29 93.1 32 ........................CT... GTGTCGATGATCGTTCGGCTGATGCCGACCAG 6643 29 93.1 32 ...................A.....T... GGGATGCTGTCCACGGAGAACACCGTGTACCT 6704 29 89.7 32 ...........A.G...........T... CCGCACCTGCCGATGGAGGCCTGCCTGAAGCT 6765 29 89.7 32 ...........A.G...........T... GGCGGTGCCGAGTGAGCTGGGGAGGCAGTACC 6826 29 89.7 32 ...........A.G...........T... CGAGGCTGCGATCCGCCAGGCCAGCCCGCTGT 6887 29 86.2 0 ...........A.G..........AT... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 55 29 92.9 35 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : TTCACCGGGGCAGCCGACTTCATGCGGATGCGTCAGCAGCGCTACCAGGCACCGCCAGTGGACGCCTACCTGCCCGGCGACTGGCCCGGCGACGCCGAGGCCTCGGTCACCGACCTCGACCCGGAGAGCATCGGAGGCTCCTGGCTCGCCCAGTTCGCGATCGGCGCCGCCCTGCCGAACGTCTACTATCGGCGGGCGCCGTACGGGGACATGGTGACGTGGTGGTTCTTCGACACCGCGGTGACGTCCTGGGCGACGGTCGACTCCGTCCCCGACCGCAGCGAGTTCGAGGTACGCCAGAGCGGACCCCGGCGGCTGTGGGACGAGATCCACACCGCCTGGACAACCTGGGAGAAGGCAGGCCGGCCCGGCTACGAGCGGTTCGGATTGACCGTCACCACGACTGGCACCCGCACGGTGTGGCTCGACGACCCCGGCCATCCCTGGCACTTGCTCGCGCACTGACGCTGGCGCTGGAGACCGAAGCAAGAGCGTAAGAC # Right flank : CTCGGCTCGGCGACTACCCGGGTCACGCGGCGCCGCGCACAGCGGTGGCTGGTGCCTGGGTCGTGCGGCGAGCGGTGGGCAGTGGAGTCGCCCCGGCACGCTCGGCGCGGGCCCGTAGGAGTGCGGCGCGGTGCCGCTCTCGCTGCTCGCGGGCGCGGACGGTCGCGGCCGCCAGCGGCGGGTCCTCGTCGACCGGAATCCAGTCGGTGGTCTCCGGCTCGCGAAGGCGGTTGTAGTGGCGGCGCAGGATCTCCTCGCGCTCCGCGGCGGCCTCCTCGATGGCGGCCTGGTGGTCGGCGGTGAACTCGCCCATCTGCTGGCGCAGCTGCCGGTAGACGTCGCTGTGGGCCGCGGGGTGCAGGGCCGGGGCGAACGGGGTGTAGTGCGGGTCGTCGTCCAGGTCCGCGCTCTCGCTGCTGGCGCGGCCGACGCGGACGTCGAGGGCACGGACGCTCCCGGCGGGCAGGTGCTGGTCGAGGCGGCGCAGGACGTCACGCTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148-1639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000075.1 Kitasatospora griseola strain JCM 3339 sequence075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 148 37 100.0 35 ..................................... CTCCGAGACGGGAGCCAACACGGGGTCCGGCGCGG 220 37 100.0 35 ..................................... CTCCGAGACGGGAGCCAACACGGGGTCCGGCGCGG 292 37 100.0 36 ..................................... AGTCCAACCCCGACGGCGTCCTCGTCGTGCTCTGCT 365 37 100.0 36 ..................................... AGTCCAACCCCGACGGCGTCCTCGTCGTGCTCTGCT 438 37 100.0 35 ..................................... GGCGACCCGCGGGAGGCCTGGCGGTGGCTGGCCGG 510 37 100.0 36 ..................................... CATTCGTCACGTGACGAATGGAAGTGTGGGTGCCGA 583 37 100.0 36 ..................................... CACGACACGGGAGCCGGTGGCGAGGTCGAACGCGAG 656 37 100.0 39 ..................................... CTGCAGGAGGTGGCGTGGCTCGCCGACCCCGGCGCAGCC 732 37 100.0 36 ..................................... TAGTCAGCCACGGCGGGCCCCCAGCTCCGCGCCGGA 805 37 100.0 37 ..................................... TTCGTCGTGGTCGGTGTGGGCGTGGTGGTCGGCTCGA 879 37 100.0 35 ..................................... AACTCGTCGGGGGTGGGAAGCTGCAGCGCCTGGCC 951 37 100.0 36 ..................................... TCCTACATCTCCCACCTGCGGCGGCACGGCGGCCGG 1024 37 100.0 36 ..................................... ACCAGACGGGCCAGCTGGTCGGCGGCGTCGTCCTCG 1097 37 100.0 34 ..................................... GCCAGCGCGCACCACCGCTGGATCCTCGCCCATG 1169 37 100.0 34 ..................................... GCCAGCGCGCACCACCGCTGGATCCTCGCCCATG 1241 37 94.6 32 .................................T..T CCCGCCGTACACCCCGACCTGATCCAGAACCT 1313 37 97.3 33 ..............C...................... CTTCCCGGCCACCGCTGAGGGCGGTGTCGGCGG 1385 36 89.2 35 .............C-.......A.T............ TTCGACACCACGTCGAACTTCGGCCTGAGCACTCT 1457 37 94.6 37 ..............C.......A.............. GCCGCGACGGGGATCTCCCACAGGGCGAGCGCGCCGG 1531 37 97.3 35 ..........T.......................... GCCGAGCTGGCGGCGCTCTCCACGAATCCGTCGGC 1603 37 89.2 0 .....A.....T..C.........A............ | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 98.2 35 GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Left flank : GACGTCGGCGGGCAGCGGTTCGGAACCCCGAGTGTGCAGCCGCCACGCGGATCGCACCGAAGCAGGATGTCCGAACTCTGTAGATTTGCCTGTCCGGTTGGTCGCGCAGGAGTACCAGAGACAGCCGGTTTCCGCTGATGGACCGGTG # Right flank : CCGGGCAGAACGGCGACCGTGTGGCATGGAGATTTCCAGTCATTTCTGTCTCCTGTTCGGTCACGGATCGGTCGCCATGGGTCACCGGCTGGTCTCGGAGTTGGGTTTGTCGACCTTTTCGTCGGCTCTTGGCCAATGCTGATCGAACCTGTTCTCCGTGGCGGGTGTGGGGAGGTTTCTGCGCTCCGGTCGTTGTCGGTGGGCTGGTCTACGGTCGCCTCGGCGCAGCAGAACTGATGTTGCGTCATCTTCTGTGTGTGGAAAGGCGATTGTGGTGGCCGGAAGGGTTGCTGCGGCGGGGGAGCGGGATGCTCTTGCTCGTCGTCGGGGGAATTCGGGGTGGGTGTTCCCGGATCTGGTGGTGGAGGTGTGGGGGCCTCTTGCGTGCTTCACCAGGCCGGAGTTGAAGTCGGAGCGGGTGAGTTATCCGGTGATGACGCCGTCGGCTGCGACGGGGGTGTTGGAGGCGATCTACTGGAAGCCCGAGTTCCGGTATGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7698-8244 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000075.1 Kitasatospora griseola strain JCM 3339 sequence075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7698 37 100.0 36 ..................................... CTCCGTGGATCACGAGGTGGTAGGGCCGGTCCAGGG 7771 37 100.0 37 ..................................... TACAACGTCGGCGGCAAGTTCAGGAACCCGCACCACG 7845 37 100.0 34 ..................................... CCGGCCTGGCCCCGGGCGGCGGCGTCGGCCGCCG C [7881] 7917 37 100.0 36 ..................................... GCGACGGTCTCCGCGGTGCGGACCATCGACGTGCTG 7990 37 100.0 36 ..................................... CGTCGACTGCGGCGACGGGTACCAAGGCCCTCCGGT 8063 37 97.3 37 ..................C.................. CCGGGCAGGTTGCTGAACTGCGCGTAGAAGCGGCGGT 8137 37 100.0 34 ..................................... TCGGCGGGCCTGACATGGTGACGGACGGGACGAG 8208 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.7 36 GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : GGTCCAGAAGTCCGTCTTCGAGATCGCCGCGACCGACGTCGACCTCCTGCACCTCCTCAACGACATCGGCAGAACCATCGACGAGAACACCGACAGCATCCGGATCTACCGCCTCCCGCACAACGGCTTCAACGACGTACGGACACTCGGCATCGCCCGAGTGCAAAGCCACCGTGAGGACCTCATCCTGTGACAGAGCACGGTTCGGAACCCCAAGTGCACACACGCCACGCGGATCGCACCGAAGCGTGATGTCCGAGTTGAGTGGAATCAGCCGGTGAACAGTCTCCGCATCGCAGTCACTCGGGACGTGTTCACCCTGGTTATATGCCGTGGCGGTTGTCCTTCGGGACGGCCGAGGATCGCAACGCCCGCATCGAGCAGGAGGAGGCCGCCGCGGAGGAGGTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAACCGCNNNNNNNNNNNNNNNNNNNNNNCGGGCATGACCGACGACGCCACCTTCGAGGACA # Right flank : CAGGCCGCGTCCCGGGCGACTACCCAGTCGCTCGGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1528-2053 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000067.1 Kitasatospora griseola strain JCM 3339 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1528 29 100.0 32 ............................. GGCCCCGGACACGGGGTTCCGGGGCCGTTTCC 1589 29 100.0 33 ............................. TGCTGGAGCTCGGAAGACGCCTCGAGCTCATCG 1651 29 96.6 32 ..........................T.. GCGGGCTCCGGCATCTGCGGTCGGCCGGCGTC 1712 29 93.1 32 ................C...........T GCGGCCGGGAGGCCGACGAGCACCGCCAGGAC 1773 29 86.2 39 ...........G.C..C........C... GCCGCAGGGCCCGCCCCCCAGCGGGAGATCGCCCGCCGC 1841 29 89.7 32 ...........G.C...........C... GAGAGGTCCGCCAGCTGCTGCACACCGCCGCT 1902 29 86.2 32 ...........G.C..C.......A.... ACGCCCGGGTCGGGCTGCGGCGGGGCAGTCAC 1963 29 96.6 32 ................C............ GGAATGCCGGGGTTCACCTCGATCTGGTGGGG 2024 29 93.1 0 ................C...........T | T [2049] ========== ====== ====== ====== ============================= ======================================= ================== 9 29 93.5 33 CTGCTCCCCGCACGCGTGGGGATGGTCCC # Left flank : TCGTACGCACCGGATCTCAACCCGCAGGAGGGCGTCTGGGCGCTGGTGAAACGCGGGCTCGGCAACCTCGCCGCGATCAACGTCGACCACCTGGCCAAGGCCGTCAAACGACGCCTCAAGAAGATCCAGTACCGTCCGCACCTGATCGACGGCTGCCTCGCAGGCGCCGGCCTGATCATGGACGGCTGACCACGACCAGGACCGACATCACGCATTCAAGTTCAGTATCAACGACTATCAGGGCGAACTCGTCCCGGGCGACAAGAAGGCCGTCCAGGACCGGATCGACAAGATGCTCAGCGCCGCCGAGGCCGGCGACACGCCGCTCGACGACCGATGGGACGCGATGCGCAAGATCGCAGAGATCCTGATCGCCGCCGCAGGACGCTAGCCTCTGCCGCATTGCTGACATCAACGCGACGCATCACGCCAGGTCATAGCCAACCCGGTCGGCTGAACACTCGGAAAACTCGACCCGGCTGAACCGCAGATAGCGGAGT # Right flank : TCGAGTTGAGGATCCGTCGCCCGGTACAGCAACTGATCCTTGCACGCGGAGATCGTCTCGCCGTCAGAAGACTGTCGGGTACCTCGGCCGGCGGCTCCCCGTGACCACAGGCGTTGTACTGCCGTGGGAGCATCCACCCACGCGCCACTGCTCCTTGACACCTTCACCGCACCGCTGACCCGGAGGACGACGCCCCCGGCAGGGAAGAAAGCCGCTTATGTCCGAATTTCTGAAAGTGGGTCATTTCCGGGTCGACGGCGCGTAACACCGCAGGTCAACGAGTCTGCTCCCCGCATGCGCGGGGATGGTCCCCGAAAGGGTCCGGCGGGCGGCTGCCGGAGCGGCTGCTCCCCACACGCGCGGGGATGGTCCCGACGACGGCCTGGAAGTCGGGCCGGTCGGGCGCTGCTCCCCACACGCGCGGGGATGGTCCCGTCTGCTCCGAGTACCCCGCCGAAGAGATGATCTGCTCCCCACGCGCGCGGGGATGGTCCCCCGAA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGTGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACGCGTGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2336-4131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000067.1 Kitasatospora griseola strain JCM 3339 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2336 29 93.1 32 .........G..T................ CGAAAGGGTCCGGCGGGCGGCTGCCGGAGCGG 2397 29 100.0 32 ............................. GACGACGGCCTGGAAGTCGGGCCGGTCGGGCG 2458 29 100.0 32 ............................. GTCTGCTCCGAGTACCCCGCCGAAGAGATGAT 2519 29 96.6 33 ...........G................. CCGAACTCCAGCCCGACGACGACCAGATCCACC 2581 29 100.0 32 ............................. AACCCCGCCGAGACGCCGGGCGGCCGGGACTA 2642 29 93.1 32 .........G.......A........... GGCGCGTTGTGGATCTCGACTGCTGGCAGCAC 2703 29 89.7 32 G........G.........A......... ACGTGGTGAGTGTCCCAATGAGGGCCATAGCC 2764 28 86.2 32 .........G.......-......AC... AGCACCGACAGCTCCGCCTGGTCCAAGGCCAG 2824 29 82.8 32 .........G.G.C..........AC... GACTGTGATCCGTCGCGCACGCCTGCCTGTAA 2885 29 89.7 32 .........G.G.C............... AGGGTTCGCGGGACGACGTTCTTGCCAGTCGT 2946 29 96.6 32 .........G................... GACCCGCACCGGGACGGCGAGGCTGTCGCCTT 3007 29 82.8 32 G........G.G.C.......G....... AAGCGCGGGGGTGGTGGTGGCAGAAGGCGTGA 3068 28 82.8 32 .........-TG.A..........A.... GCGTCGGCGAGGCGGTCACCGGCACGCCGAAG 3128 29 86.2 32 T........G.......A......A.... GTCTTCGCCGGAGGCGGAGGGGGGACCTGCAC 3189 29 89.7 32 .....G...G..............A.... TCGGCCTCTGCCCGGTCGCTGCCGGCACCGGT 3250 29 89.7 32 ......T..G.C................. TGCTCCAGGTCCGCCAGCGGGATCGACGAGCC 3311 29 82.8 32 .....T...G.G.C...........C... ACGCACAGCTCGGACTTGGTGATGCTTTTGGC 3372 29 89.7 32 .........G.G.C............... GTGTCGATGATCGTTCGGCTGATGCCGACCAG 3433 29 82.8 32 .........G.G.C..........AC... TGGAAGTCGCCGGCCATCTCGACGGCGTGCTT 3494 29 89.7 32 .............A..........AC... GAGCTCACCGAGCTCAGGGGCGACGGCCAGGT 3555 29 86.2 32 .........G.G.C.............G. ACCCCGGGACCACCGTTAGGTTCTAACGGTGG 3616 29 93.1 32 .........G...............C... GACCAGCGCTTCCGCCACGACCAGGGCGTCAA 3677 29 79.3 31 ........TG.G.C..........AC... CGCCCCGGGGCGAGTGCCGCCAGTGCTGGGA 3737 29 89.7 32 .........G.G.T............... GCCAAGCAGGGCCTGGTCTGGCTCGGCCGGGT 3798 29 86.2 32 G........G.G.C............... CGGCCGTCGGCGACAGCGTCCAGGCCGAGCGG 3859 29 86.2 32 T........G.G.C............... CCGCACGTACCGCTCCAGGCCGCTGCCGCGCT 3920 29 75.9 32 .....A...GTG.C...A..........T GCACCGCGAAAGCTGCCGCGAAGGCCGACACA 3981 28 82.8 32 ...T.....GTG...-............. CAGCGAGGTGCAACCGTGTCCAGCATCATCGG 4041 29 89.7 32 .........G.C............A.... CCGACCGGCGCGGGCAAGTGGCAGCCGCAGCA 4102 29 82.8 0 G..G.......G.C....A.......... | T [4126] ========== ====== ====== ====== ============================= ================================= ================== 30 29 88.5 32 CTGCTCCCCACACGCGCGGGGATGGTCCC # Left flank : GCCGCCTGCTCCCCGCGCCCGTGGGGATGGCCCCGAGAGGTCCGCCAGCTGCTGCACACCGCCGCTCTGCTCCCCGCGCCCGCGGGGATGATCCCACGCCCGGGTCGGGCTGCGGCGGGGCAGTCACCTGCTCCCCGCACGCGCGGGGATGGTCCCGGAATGCCGGGGTTCACCTCGATCTGGTGGGGCTGCTCCCCGCACGCGCGGGGATGGTTCCTCGAGTTGAGGATCCGTCGCCCGGTACAGCAACTGATCCTTGCACGCGGAGATCGTCTCGCCGTCAGAAGACTGTCGGGTACCTCGGCCGGCGGCTCCCCGTGACCACAGGCGTTGTACTGCCGTGGGAGCATCCACCCACGCGCCACTGCTCCTTGACACCTTCACCGCACCGCTGACCCGGAGGACGACGCCCCCGGCAGGGAAGAAAGCCGCTTATGTCCGAATTTCTGAAAGTGGGTCATTTCCGGGTCGACGGCGCGTAACACCGCAGGTCAACGAGT # Right flank : CAGCGCTTCGCCGCCGCCCGTGCGGCCGGCCGCCGCTCGCCGTGTACACGGGCGTCGTAGTGCCGTGGGAGCATCCACCCACGTGCTACTGCCCTTTGACACCTTCACAGCACAACTGAAGGGCGGCGCCATCGCGCTCGAACGGCGCCAGCCACGGGCCGGCCCGCACCGAAAGCATCCACAAGAAGAGAAAGATCGCTTATGTCCGACTCTCTGAAAGTGGGTCATTTCCCGGTCGACGGCGCGTAACACCGCAGGTCAACGAGCTGCTCCCCGTGCACGCGGGGATGGTCCTCGCCGTCCACGTCCCTACCGAGAGGTGCACCCGCTGCTCCCCGTGCACGCGGGGATGGTCCCCACAACGGCAGCCTCGTGGGAGAGCGTGGTCGCTGCTCCCCGTGCACGCGGGGATGGTCCCAGTCGGGACAGGACATCGGGCGCGAGGCCGGCCTGCTCCCCGCACGCGCGGGGATGATCCCACGTCGCCCAGGGCTGCGGGT # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [20-47] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 10125-10644 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000067.1 Kitasatospora griseola strain JCM 3339 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10125 29 86.2 32 ...........G.C..........AC... AACTGCGGTCGGGAGGCGGTGAGTTGGGTCGG 10186 29 89.7 32 ...........G.C...........C... GCGAAGGCCCAGTCAGACGGCTCCGTGTCAAT 10247 29 89.7 32 ..........TG.A............... TTCGCCGGGTCCACCACGAAGTGGTTCTCGAC 10308 29 86.2 33 ....C...G..C.C............... GGCACGGCGCTCGGGTCTCGATCCGGCATCCAG 10370 29 100.0 32 ............................. TGTGGGCGGCGACCGCGTGTTGAGCAGGGTGC 10431 29 93.1 33 ........................AC... GTGTCGGGGCCGAGGATCGCGTGCCGCTCTTCG 10493 29 93.1 32 ........................C.T.. ACGATCATCCGCATGGAGACCAGCACTCAGGC 10554 28 82.8 33 ................T....G.-C.G.. GTGGGTCGCGGGCATGATCGGCCACGCGTTCAG 10615 29 79.3 0 ....CT.....G..A............AT | T [10618] ========== ====== ====== ====== ============================= ================================= ================== 9 29 88.9 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCTGAGCCTGAGGGGTTCGTGTGAAGAACGGGGACACCTGGTGCCGCATCGCGTCGGCCAGCGCATCCGCCCGTGCAATGTCGTCGACAGTGATCGCCACGGATGTTCGAACCCCCTGAGCCGTGAGACACGGATCATCTCACGCGAGCACTTCACAACCGGAGCCCTTGGCCCTCACACATACCGACCCCGGGCAAAGGCACAGCTGTTGTTCCTTCACCTGCGGGATGTTCTCGCAGTGATCGCTTGATGGCTAGCGCTGTCGGCAACTGAGATGTCCGCTCGTGTCACACCGCCGTGGGATCATCCACCCGCGTGCTGCTGCTCGTTGACATCTCCGCAGCGCAGTCCAAGGGTGGTGCCACCGTGCTCGAGCGGCGCCTGCCACGGGCCGGCCCGCACCGGAAGCATCCGCAAGGAGAGAAAGATCGCTGATGTCCGATTCTCTGAAAGTGGGTCATTTCCCGGTCGACGGCGCGTAACACCGCAGGTCAACGAGG # Right flank : TCTGAGGTCGGCCTGGGTCAATCGGGTGCGCTCACCGAGCACTCTCGTGCGCCCTTCCGCACTCGGCACAGGGGCGGGACGATGGCACCCGGCCGGAGTCGGTCCGGCCGGGCATCGGGGAGGAGAGGTCATGGGCGAGCACGAGAAGCCGACACCGGATCCAGGGACGGGGACGCCCCCGCCGGGCAACGCGGACGGCAAGGTCGACAAGCCTCAGCCGGGCACCGGCAAGCACAAGAAGTAGGGGGAAGCACGGTGACCGCGGTCGACAACACCACCAGCCTGTCCGCAGACGTGTGGCGGCAGCTCCTCGACACGGAGATGGCGCGCACCGGACAGTGGCCGGAGCGCTCGCCGTGGATCCGCCCCGCGGTTGCCGCACTTCCCCGCGACCTGTTCGCACCCGGCCGTCTGTGGGACTGGGACGGCCACGCCTGGCAGCCCGTCGACCACGACACCGCCCCCGGGCGATGGCTGGAACTGCTCTACGGCCACCCGAG # Questionable array : NO Score: 3.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000087.1 Kitasatospora griseola strain JCM 3339 sequence087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 41 37 100.0 38 ..................................... CGTAGCGGCCCCGTCTACCGATTCCGCCGCACCGACGG 116 37 97.3 35 ...........................A......... CCCGCGCCGACCTGGAGGTGCTCGCCGACCTGCTG 188 37 100.0 37 ..................................... CGCATGGAGCACGGAGCCAACCCGGTCGGCCAGGCGT 262 37 100.0 35 ..................................... CGGTCCCTCGACGCCGCGCCGGACCCCGCCGCCAG 334 37 97.3 36 ........T............................ CCGGACTGGCGCAAGGTCTTCCACGAGATGCTCGAC 407 37 97.3 32 ........................T............ TCCCGGTCCGAGCGCAGCTTCGCGACCGTGTC 476 37 100.0 36 ..................................... GCCGCCACGGGCACGACGTGGACCAGGTCGTGGATG 549 37 94.6 36 .........A..........G................ CTCGCTTCGACGCTCATCGACGGCGCGATCGGCGAG 622 37 94.6 37 .........A....C...................... TCCTTCTCGGTGGGCCCGGCCGGGCTGGTTGGCACGG 696 37 91.9 37 .........A..T........A............... TACCTGGTGGGCGAGGTCACCTACGCGGTCCGCGGCG 770 37 91.9 0 .........A..T.......................T | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 96.8 36 GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : CAACACGTACTCGTGCTCGCCAGCCCGGAGCCGGACTCGAG # Right flank : TCTCCGGATGGTGTAGTCGAGGATGGCGTGGAGTCCCAGGTGACGGTCATCGACGGGTTGTTCAGGTCGTACAACCCGGAGCATGGGCAGAGCGATGGCGTCAAGCCTCGGACTGGTCCCCCGAGCGGGTCACAGCGAGCCCCGAGAATTTCGGTGAGACCGAAGGAAATAGATGGGGTCTGGGTTTGATGCGGCCATTTCTGGCTGACGTTCGGCTCGGGTCGAATTGATTTAACTCCGCGATGCCGGGTCTCTGTCCGGTGACGTCCTGGGCGATCCGCGGGAATCTCTGGATCCACGGCTGGAGTGGCGCTACCCTGGAGACATGAACGCCACCCGGACCCTCCGTCAAGCCCCTGGCCTGGGGACCAGCTGGGGACCACACGTCATGCGCGCTGGCGTGCGAGGTGCACGAAACGCGCTCATCTGCACACGCACGACGTGTGCGTGAGCGCATTTCAGGCAGGAATAGGGAGCTGGGGGTCAAGGGGTCGCAGGTT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 148-2166 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRI01000086.1 Kitasatospora griseola strain JCM 3339 sequence086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 148 37 100.0 35 ..................................... CGCCCGCACGAGTCAGCAGTGCTGCGGGTGAAGGT 220 37 100.0 36 ..................................... TCCGGCACCTCCACGACCCAGGCCGAGGCCCTGCCG 293 37 100.0 37 ..................................... GATGCGGCGCCGCGGGAGGCGTAGCCGAGGCGCTGGG 367 37 100.0 36 ..................................... CCCGGCCTGATCAAGCTTTACGAGAGCGCCCCGATC 440 37 100.0 36 ..................................... CCCGGCCTGATCAAGCTTTACGAGAGCGCCCCGATC 513 37 100.0 37 ..................................... GCCTTCACCTGCGCCAGCTTCTGCTGGTGCTTGCGCT 587 37 100.0 37 ..................................... CGTGAGCTCTGTGGCGTTCAGTCCCGACGGCCGCACG 661 37 100.0 37 ..................................... CGTGAGCTCTGTGGCGTTCAGTCCCGACGGCCGCACG 735 37 100.0 37 ..................................... AGGAAGTGGTGCGTCCTCACCGCGATCAGCGCCACCG 809 37 100.0 35 ..................................... TGCTGCCGCCGGAGCATCAGCATCGTGCCAGGCTC 881 37 100.0 38 ..................................... TCCTCGTCGTCAAGCCAGCTGGCCGATCGGGGCCCGGG 956 37 100.0 35 ..................................... CTGCGGCCAGCGCTACTCACCCACCGGGACCGGCC 1028 37 100.0 39 ..................................... GGCTGAACTGGTGCCCGCGCCCGCCGACGTCGCGGAGGT 1104 37 100.0 36 ..................................... TCCTCAGTCCCGGCACCTACCGAAGGAGAAGGACCA 1177 37 97.3 36 .........A........................... CAGTCGTCCCTGAACTGCTGCAGCATGTGATTGGGG 1250 37 100.0 39 ..................................... GGGTTGAACACCCGGGTGCGCACCGCATCCCCGCTGCGG 1326 37 100.0 38 ..................................... TACATCTGGGACCACGAGCACCACCCGCACCTGCCCTA 1401 37 97.3 36 ...............................G..... ACCCGCGCACTGGCCGACGTGACCGCCGAGATCACC 1474 37 100.0 36 ..................................... TCCGACCCGTACGACCCGCTCGCCGTGATGGCCCCA 1547 37 97.3 36 ..............C...................... AACTTCCTGCGGCGCAACAACCAGATGAAGGCCATC 1620 37 97.3 35 ..............C...................... CCCCACCTCCATGGGCCGCCAGGCTGGGGGGCGTC 1692 37 97.3 35 T.................................... GAGCTCGGCCCACACTACCTTGCCCAGCTCCAGCA 1764 37 100.0 36 ..................................... TTCGTCCCGAGAAGCCCGAGCGCAGCCGTGTTGCGC 1837 37 97.3 37 ..................T.................. CCGCAGACCAGACCCGCCCGTCAGCCCAACCCGCAGT 1911 37 94.6 38 ..............CT..................... TCCGAGGTGAGCGAGCACCAGGACGGCGGCTACCTCGC 1986 36 91.9 35 C............-..C.................... CTGTCGCTGCTGGCGGTCGCCGCCCTCGCGCTGAC 2057 37 94.6 36 ..............C.........T............ CATGTACCGCACGTCCGGCGCCGGGCCGGGCCAGCG 2130 37 89.2 0 .C........T...C...................T.. | ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 98.4 36 GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Left flank : GACGTCGGCGGGCAGCGGTTCGGAACCCCGAGTGTGCAGCCGCCACGCGGATCGCACCGAAGCAGGATGTCCGAACTGTATAGATTTGCCTGTCCGGTTGGTCGCGCAAGAGCGCGAGAGCCAGCAGGTTTCCGCTGATGGGCCGGCG # Right flank : CTTGCCGACGCGGCCCGGCGCGCCCACCAGATCGGACTGCGCCCAAGTGCGGTCGTCTCGTGGTCGGCGTGAGTGGAACGAGGGAGGCTCCGGGGCGGTTTCCGTGCTGAGGAGGGCTCAGAGGAGGAAGGCGGTTCGGTCTTCGGGTTGGGCGGGGTCGAGTCCGCGGTGGGGGTGGTAGGCGCCGTTCCACAGGAGGAGGTTGCCGATGACGGGTTCGGCGAGGCCGGTGGTGAGGGCGGCGTCGGCTTCGTGGCGGGGGAGTTGGGCGGTGTGGGGCTGGAGTCGGCGTAGTGGTTCCGGTCCGCACGGGTAGGGGGATCTGAGGGCGGCGATGTCGGCTTCGGCGGCGGCGCGGTGGGCTTCGTCGCGGATGACGACGACCGGCCGGTTGAGGGTGTCGTCGATCATGCGGAAGGCGTCGTCGACGGCGGGGAAGTCGAGTTGGGTGCGCAGGGTGTCGATGTGGGCGCCCATGCCGGTGGGGCCGCTGCCTTGGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //