Array 1 553728-554840 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006965.1 Thermococcus paralvinellae strain ES1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 553728 30 100.0 37 .............................. ATGAAGAACTATTTTTGTTGGCTCCCCGTCTGGGGTA 553795 30 100.0 38 .............................. TAGCTGGACTTCCTTCTTATTTCTAAAGAAAACCCAAA 553863 30 100.0 37 .............................. TTCTTTTTGGTTTTGTATGTTGTCCACTTCTCTAAGT 553930 30 100.0 38 .............................. GACCTCAATTGTTTGGCTCTTTGTGGTGTTCCTAACAA 553998 30 100.0 37 .............................. TTTCCTAGCACCTTGCTAGCTTTTGTATTCTTGCATA 554065 30 100.0 37 .............................. ATTGATGGCTATGAGGGTGTGGAAGTTGGAGAAAGCT 554132 30 100.0 40 .............................. GCTTTATTGAGCCAGAGCGGGAATTCTTTCTTTTTGATTA 554202 30 100.0 39 .............................. GCTTGCTATCTCTTTTGATGACAGTGGTCTTAAGGAAAA 554271 30 100.0 39 .............................. AATGGTTACAAAATCGAAATCTACATTATGGACTTAGTG 554340 30 100.0 38 .............................. GAAAAATCAAGTTTGTACCATAGCAACCTTCAAAGCTT 554408 30 100.0 37 .............................. GTTGAGGACCTTATCTGCATCAAGCATATCAACGACT 554475 30 100.0 36 .............................. GCGGCTCATCAGACTCCTTATCAAAGATTATCGAGT 554541 30 100.0 35 .............................. CCTACAATGCTGATGAAGAACAACGAGAATGCCAC 554606 30 100.0 38 .............................. TTGCACCTTCAGCAAGACCTACTGTTCCCCCATCCAAT 554674 30 100.0 40 .............................. TCCAGCAGACCTCTTAAGCCTCACATCTACACCCCTCCGC 554744 30 100.0 37 .............................. TTTATAGAGGAAGGCTTGAAGACACTTAGGAACGTGG 554811 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 100.0 38 GTTTCAATAAGACTTTAGAAGAATTGAAAT # Left flank : AAAGCTTAAGATGCTAACCGAATAATTTTTGATTCTCGTTATTTTTCTTGTTTTTGTTGTATTTGGTTCATTACAGTTTTCTTTTCTGAAATATTATCCCGAAAGTTTGTTGGAAGTTTTTAGTAATTGTTTGTTAGAAAATTACGCTATGTTGCAGATTTTATGTAAGATTGTAACATCTTAAATGTACATGTTTGGATTTGAGATTTCTAAGAGCCTCTTCGGTGTGTACTCCTCATGGAAATTGGTCATTTTTGGTTTAGAGATGTTTAATGTGAGATTTTTGGAATTAAAGGTTTGCTTGAAGGTTAGAACTCCCTTAGACATTATTGTGCATTGAGAGATTGGGGTTAGTAATGAGCTGGGTTGCGTTAAGTAGGCTCCAAGATACTTTGAATCAGAAAGTCATCCTGGCTCAGTTATTATCCCTTTGGCAAAAGGCTTTTATAATTCAAGCGTTTTTATAGTCTTATTGGGGAAATAGGGCAAAATTGCACCCT # Right flank : TAGTCACTTTTGTCCCCCCAACATTTAAAAACACACAAGATTAAATATTTTAGGCGAGCCTAAATTCTGAGGTGATTGCATGGAGGCAGTAAAAGCAGAGAGTGTCAGCATTTATTATGATAGCTACACAGCTGTGGAAAACTTAACATTTAAACTCGAAGAGGGTGAGACCTTACTTCTCCTAGGCCCCAACGGGGCTGGCAAGACAACACTTCTTAGAACATTGGCTGGATTTCACAGAGATTATAAAGGCAAACTCTTAATATTTGGAAAGCATCCTCTGGAAGCTAGAGACCTTATATCATATGTCCCTCAAAGCCACTATCTGAATGAAAGAGTTCCCTTAACAGCTCTTGAAGTTGTTGCAATGGGAGGAATTTACAAGAGAGGTTTTGTCCACTTTAAAATCCCAAAGAAAATTTTAAAATCTGCAGAAGAAGCTCTAGAATTCGTTGGATTAAGGCACATAAAAAACAAACTATTCAAAGAGCTGAGTGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTTTAGAAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 857657-855389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006965.1 Thermococcus paralvinellae strain ES1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 857656 30 100.0 37 .............................. AGTTTTAACACATGGCGAAGGAAAGAAAGGAGGAATC 857589 30 100.0 37 .............................. AAATCAAGCACAACTGAGCCGTTTTGCAGAATCGTGA 857522 30 100.0 37 .............................. ATTACCGATAAACCTTATTTTTATTAAAAAGGCTAGG 857455 30 100.0 55 .............................. TAAGCTTGATAAAGAGAACGTTGAAGGTGTTCAGAGGTCAAATTGACCAAGTATT 857370 30 100.0 37 .............................. GAATGAAGGTGTTCAGAGGTCAAATTGACCAAGTATT 857303 30 100.0 37 .............................. GAATGAAGGTGTTCAGAGGTCAAATTGACCAAGTATT 857236 30 100.0 37 .............................. GAATGAAGGTGTTCAGAGGTCAAATTGACCAAGTATT 857169 30 100.0 37 .............................. AAGGGAAAGAATTGAAGGTCATAACTAGGAGTATAAC 857102 30 96.7 37 ....T......................... AAATCAAGCACAACTGAGCCGTTTTGCAGAATCGTGA 857035 30 100.0 37 .............................. ATTACCGATAAACCTTATTTTTATTAAAAAGGCTAGG 856968 30 100.0 36 .............................. TAAGCTTGATAAAGAGAACGTTCTTGTTTGAACTCG 856902 30 100.0 37 .............................. ACAAAATTATTCAGAGAGGGCAAATGGGAAATCGACG 856835 30 100.0 37 .............................. GAATGAAGGTGTTCAGAGGTCAAATTGACCAAGTATT 856768 30 100.0 37 .............................. AAGGGAAAGAATTGAAGGTCATAACTAGGAGTATAAC 856701 30 100.0 38 .............................. TGTGCAAGCTCATAGGGGTCTAAATCGTCATCTTTGGG 856633 30 100.0 38 .............................. ACCTTTGGGGATGAGGAGGGTCGTTGTATTGTTTGTGG 856565 30 100.0 37 .............................. GCCTTCAAGTCGTCTTTTCTCGTCTGGAACGGTGTAT 856498 30 100.0 41 .............................. ACAAAGGCTATTGTTGTTAAGCGGGTTTCGAGGAGATTGGA 856427 30 100.0 37 .............................. CGGGCTATCACCCCCGCTACGGTCAATAGCAGCCATG 856360 30 100.0 38 .............................. TACATGGGAATTGACTTAGAAATTGCTACTGATGGAAA 856292 30 100.0 37 .............................. ACATAGGAGTAAGTTAGCATATCATACAGTAGTGTAT 856225 30 100.0 36 .............................. ATTGCCTCGATTCTGAATGTGTAAATGCCAGGCTCA 856159 30 100.0 37 .............................. CTGGTTCTACCAGGGACTTAATAACAGTCCTGAAATC 856092 30 100.0 37 .............................. AGCAACTTCCCCAACGCTGATTCAGTAACTGTGACAG 856025 30 100.0 38 .............................. ATAATAATCAGGATTAGACTCAAGAGTGCAAGTTTTGT 855957 30 100.0 37 .............................. ATACATTTCTTGGATGCATACAAGAGGTGGGAAAATG 855890 30 100.0 37 .............................. ACAAAGCTCGATATTTCAACGTTTGCGAGAGTTCTGG 855823 30 100.0 37 .............................. CATTTCTCTGATTTTTTCTTTATCTACTTTCATTTCT 855756 30 100.0 37 .............................. CTTGGATTTTTGCACTAGGTGGTTCAGCTACAGCTGT 855689 30 100.0 37 .............................. CATTGAAGATGAAGAGCAATTCAACACAGTAAAAGGA 855622 30 100.0 38 .............................. TAAACTTTGTATCGAATTCATTTTGTAACATTTCATAA 855554 30 100.0 38 .............................. CCTTAATTTTGACTGGCTTAATCTCATTGACAAGCTCG 855486 30 100.0 38 .............................. TGCTTAGTGCTAGCGAGGATGTTCAGCAATTCTACATT 855418 30 96.7 0 ...C.......................... | ========== ====== ====== ====== ============================== ======================================================= ================== 34 30 99.8 38 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Left flank : TTTTATAGTCTTATTGAGAAAATAGAACAAAATTGCGTCCTTTCTTGTTTTTGTAGTTTTTGGCTCTTTGCAGTCTTCTTTTCTGGAATACTACTCTAAGAGTTTCTTGGAAACCTTTAGTAATCATTTGTTATTAAATTACATCATGTTATAAATTTCCATTAAAATTGTAACGTTTTGAATGTACACATTTGGATTTAAGATTTTTGAGAGCTTCTTTAGTATGTTATCCTAATGAAAACTTGACCATTTTAAAATTAAAAGCCAAAGAAGTTAAATTTTTGGAATTAAGGAATTTTTTGGCCATTGGAACCCTCTTGGACATTATTGTGTAACAAAGAATTGGATCCAATGGTGGAACCTATTCGTCAACAAGAAATCATACAAAGTTTCTAAATTCGAGGCTTGCTTTGACTCTGTTATTAACCCTTCAGCAAAAAATTTTTATAATTTAAGCGTTTTTATAGTCTTATTGAGAAAATAGAACAAAATTGCGTCCT # Right flank : ACGCTTTTTCTACAATCTTACTTAATAATGAGCCTCTAGAGAATTAACTGCTCAGTGCCATTATGATGTAATTAATCAATCAAATAATTCAACAATTACAGAATTAAACATCTGAATAAGACAATGTTTATATTTTTAAAATGGCACTCCATTTGGGATGAAAGATGCTGCCTACTGGAAAAGTTCCACCAGAGAAGCTTAGAGAGATAGTTTTCAAACACCTGGGTGTTCAGGGGGAGAGGGTATTAATTAAGTCCGGTGTTGGGGTTGATGCAGCTGCCGTAGAATTTGGCGATAAAGTCCTCGTAGCATCCACAGACCCAATAACAGGTGCAGAGAAGAACATAGGATTTTATGCTGTTAATGTGAACGCTAACGACGTTGCAACTTTTGGGGCAAAGCCAAAGTGGTTCCTAGTCTCAGTTCTTTTACCAGAAAATGCTGATGAGGCTCTCTTAAAGGAGATAATGACAGATATTGACAAAAGTGCAAAAGAACTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 954068-956265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006965.1 Thermococcus paralvinellae strain ES1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 954068 30 100.0 37 .............................. TGGGTCACAATCAACTTCGAAGGCGACGCTGACAAGG 954135 30 100.0 38 .............................. GCACCGCTCCAAGTCGGCAATGCATTGATGCTGTCAAG 954203 30 100.0 37 .............................. CTGATCACCGAGGCTAAGCTTTGATGGGTTGAGCAAT 954270 30 100.0 37 .............................. CGTAAGTATCGTTGAACTTAACCCAAACCAAGTAATT 954337 30 100.0 38 .............................. GGTCTTGCAAAGCCAAGATACAGCTTCTATATACTCAT 954405 30 100.0 40 .............................. CTCCGCGGGGGGACTTAGATGTGAGGCTTAAGAAGTTTGC 954475 30 100.0 36 .............................. ATCTTCCAGGACAAAGTGCATGGTCCAGGAAGATAT 954541 30 100.0 38 .............................. CATCGGCATTAGGATCCCAAAAGAGGTTGCCGAACTGA 954609 30 100.0 40 .............................. TCACTTTGAGGGTGTAGTTGCCCATCTTTGGCAGAGGAGT 954679 30 100.0 39 .............................. TGAAAAGTGCATGATAAAGCCTTAATCCACCCTTCTTCG 954748 30 100.0 37 .............................. AGGAACTCGGAATAACAAAACAAAAACTCAAGAAGCT 954815 30 100.0 37 .............................. ATAGCGAGCCGAGACAGGGAATAAAAGCTGATGTGGT 954882 30 100.0 37 .............................. CGTAAGTATCGTTGAACTTAACCCAAACCAAGTAATT 954949 30 100.0 38 .............................. TTGAGGAGTTAAGAGAGAAGGGCTACGAGGATGCACTA 955017 30 100.0 38 .............................. GGGGAGAACAGAAAAGCCTAAGCATTGACGACGAAGTT 955085 30 100.0 37 .............................. CTAACTCTAAGATCGATTAAACTGTATTGCTGAGCGA 955152 30 100.0 37 .............................. CCCCAGCATGGGGATAGGGGTTAGGCGTCATAGGAAT 955219 30 100.0 37 .............................. CAATAACTTCCCTCTCAAGAGGTTCAGGATAGAAGTA 955286 30 100.0 37 .............................. AAATGTTTTGCGATGAAGCTACAGCAATCTTTATTCA 955353 30 100.0 38 .............................. TTCGCTCTACTTAGAAGTTTTGCACCTTCCTCTATAAA 955421 30 100.0 37 .............................. TCTTACCGACATTTCATCAGGCTTGAACGAGAACAGA 955488 30 100.0 37 .............................. AAGTAGAAAACAAAAAGGTTTTAGAGATTGAGCTTTT 955555 30 100.0 41 .............................. CCGTGCATTGTTCCCGCAATCCCCTTGCCAGGAACAATTAC 955626 30 100.0 40 .............................. CTCCGCCAACTCTTAGTATGCCTAAACCTCCCGAATCTCT 955696 30 100.0 37 .............................. TTGAAGACCGATTTGAGGCTGATTTTAGATGGAAAGG 955763 30 100.0 37 .............................. CGCCAAGTGCCCAAAGTACTACACAAAGAAAGAAGAC 955830 30 100.0 38 .............................. TCAATGCAAACCATCTGCCATCGTGCTTCACATCGTCT 955898 30 100.0 37 .............................. TCTCACCGACAACTATCATCGCCGTCATGATTTTTGT 955965 30 100.0 37 .............................. TGAACCGCTATGGCAACCTTTGCCCCTGCTGCTACGT 956032 30 100.0 39 .............................. CAATTACATGCTTAGAGAAGCTATTCTCAAGGTCGAGGT 956101 30 100.0 37 .............................. ACATCATTCACGATGAAGCTACAGCAATCTTTATTCA 956168 30 96.7 38 .........A.................... TTCGCTCTACTTAGAAGTTTTGCACCTTCCTCTATAAA 956236 30 83.3 0 ..................AAGA.......T | ========== ====== ====== ====== ============================== ========================================= ================== 33 30 99.4 38 ATTTCAATTCTTCTAAAGTCTTATTGAAAC # Left flank : TTCGAAAAATTATTAAGGCTCTTTCACATTATCACCGGCATGTTAAAGGAAATAATACAGCTAAGTAAAGGTGTAATATTAATTACTGGAAATGCAAAAAAGATTACTAGAATCCTACTCAACACTTGGCTTTCGAATGGAATGACGTTTTTAGTGGAGTATTTACCTTTTGATGTAAGATACCCAGAGAATGTTTTTATTGGGGATTTAAATAAGGGTGTGGAATTTGATGGCTACCTAATTTACAACCTCCTTTCCCGATCAAAAAACGAAAGAGCAAGAATTTATGAATGGATAAAAGAGCACCACGATAAATTAATTTTAATCTACGAAACCAAATATATGAAGGATTCTGCGCTCCGTTATGGAATTAAAGAATTAATTAATTATTTAATTGCATATAAAAGGGAAACACTCGGGTTTGAAAGAATTGATGTCTATAAGTTCAAAGAGGGAAAGGTAGTTGAGAAGAAAACTTTTGTGAGAAGAGTATGAGCTAG # Right flank : TCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAACCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAACCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAACCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAACCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAACCCTTTCCATCTAAAATCAGCCTCAAATCGGTCTTCAAGTTTCAATAAGACTTTAGAAGAATTGAAATAATTGACCTTTTAGAGGACTATGGCATAAGTAAGGTTAGTTTCAATAAGACTTTAGAAGAATTGAAATAATTGACCTTTTAGAGGACTATGGCATAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTCTTCTAAAGTCTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //