Array 1 248972-251621 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOX01000004.1 Klebsiella pneumoniae strain JHTS003 NODE_4_length_431679_cov_79.543529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248972 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 249033 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249094 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249155 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249217 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249278 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249339 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249400 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249461 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249522 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249583 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249644 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249705 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249766 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249827 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249888 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249949 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 250010 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 250071 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250132 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250193 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250254 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250315 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250376 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250437 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250498 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250559 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250620 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250681 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250742 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250803 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250864 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250925 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250986 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251047 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251108 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251169 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251230 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251291 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251352 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251413 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251474 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251535 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251593 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //