Array 1 131481-132371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNHM01000012.1 Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 131481 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 131558 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 131635 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 131712 47 100.0 30 ............................................... AAACAAAATTAAGATACTCTATTGATCAAC 131789 47 100.0 29 ............................................... TGTGGCATATAATAGAAAAACTCATATAA 131865 47 100.0 30 ............................................... CGCCTTCTGTTTCTTCTGTTTTGGCAATTA 131942 47 100.0 30 ............................................... AGGAGGTGAATAATGAATAGCGTACAGACA 132019 47 100.0 29 ............................................... TTAATAATAGTTGTAACTTCTAACGACGG 132095 47 100.0 30 ............................................... AAGTGAACTGGACCATATTCGCCCACAGCG 132172 47 100.0 29 ............................................... TAAATATAAAAATAAACAATAAAATCAAT 132248 47 100.0 30 ............................................... TACAACACATAAGGGGGAGATGTTCATTAT 132325 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACGCATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTCAAATAATTCCAATTGCTGTCCTAGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 162806-161461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNHM01000019.1 Phocaeicola vulgatus str. 3975 RP4 gbf3975RP4.contig.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 162805 33 97.0 33 ................................T ATTCTTAATATACCCCCAAAACAGCACAAAATC 162739 33 97.0 32 ................................G ATCAGGCCCTACGCGGGCGGCGGGTGTATATC 162674 33 97.0 33 ................................T TCTCATACTCTATGCCTGTTTTAATGATAAACA 162608 33 97.0 32 ................................T TAGATTCCCATAATGAAGATAAACCTCGAACG 162543 33 100.0 33 ................................. TAAGAATCGACATCTTTCTGTTTATGCTTAGAA 162477 33 97.0 34 ................................C CATAATGAAGATAAACCTCGAGCGCGATTAGACT 162410 33 100.0 33 ................................. ATCCGATATGTTCGGGTTAGCGGAACGTACGAT 162344 33 97.0 33 ................................C AATAACCTGACTGGCCAACACCAATATTGCGAT 162278 33 100.0 32 ................................. TCATAGAAGCGCGAGCCTGAGCCATAGAAGCA 162213 33 97.0 32 ................................T AACTGGGAGCAAATATACAAACTATTTTCATA 162148 33 97.0 32 ................................C TTGATACGGGTATAAGCAGCCGTATTAACGGG 162083 33 100.0 32 ................................. TTTTGGTGATGAATATCATAAATATATCCCTG 162018 33 97.0 34 ................................C CGCTTGGTGATGTGCGAGAGCAGTCCGGAACCGC 161951 33 97.0 31 ................................C TTCTTGGGAAGCAGCGCGAGCAGCACGTCCT 161887 33 97.0 33 ................................G GAAAACAACTAAATCAACATCTAATTCTCCATT 161821 33 97.0 32 ................................T TTACTCTCTGTAATCTTTATTATTGACCTAGA 161756 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 161690 33 100.0 31 ................................. TATTCTGAACACATTGCAAATGTACAAAAAG 161626 33 97.0 32 ................................T GGGAAGCTTGCGCCGGATACATTATGGACGTT 161561 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 161495 33 93.9 0 ....................A.........G.. | TA [161472] ========== ====== ====== ====== ================================= ================================== ================== 21 33 97.7 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //