Array 1 50385-51268 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRH01000015.1 Escherichia sp. MOD1-EC6300 MOD1-EC6300_15_length_101139_cov_46.716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50385 29 100.0 33 ............................. GCGGTAAAATTGTTGCTACCGTCTGGCCCTTGC 50447 29 100.0 32 ............................. ACGGTGCAGGATCTGTAATTCTTGCTCGCGAT 50508 29 100.0 32 ............................. AGTTATCAGGATTATTCCCGCTCCGCCGCCAG 50569 29 100.0 32 ............................. TCGTTTTTGTGGTGGGAGTGTGCGGATTGGTA 50630 29 100.0 32 ............................. GCTGACATTGTCAGCTATAACCTTACAATGTG 50691 29 100.0 32 ............................. ACGTCCCGCTATTTCCTGGACAGTGTGTAGCG 50752 29 100.0 32 ............................. GCATTCAGCTGCAATTAGTAGAAGACGATACA 50813 29 100.0 32 ............................. GCGGCGCTAACGTGATAATCACGATCAATTAT 50874 29 100.0 32 ............................. CGGGCGTTAACCTTTTTATAGGCATCTTCCTT 50935 29 100.0 32 ............................. GCTTGCAGCAGCTGCGCCAACATCTGAATACG 50996 29 100.0 32 ............................. CTTTTTCCCGTGACAAGATCCAGTTAACTGTT 51057 29 100.0 32 ............................. CATCACTGGACGCCCATTTGAATAACTCACAG 51118 29 100.0 32 ............................. ATTCAGCAAATAGCGAATTTCATAAATATGAT 51179 29 96.6 32 .T........................... TACGTTAAACGCCATCTGTCATGGGTCGTCAT 51240 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCACGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATCTTAAACATTTACCTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76975-78345 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRH01000015.1 Escherichia sp. MOD1-EC6300 MOD1-EC6300_15_length_101139_cov_46.716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76975 29 100.0 32 ............................. CCGGAAACAACGATTACGGTCGGCCAAAAGAC 77036 29 100.0 32 ............................. TTGTTTCTCATTGCCGATTTCACCGATTTTAT 77097 29 100.0 32 ............................. CATTGGCGATCTGTCAGAGGAGTTGACAAATA 77158 29 100.0 32 ............................. CACTTTTACGACTGCACAACGGGTGAGTACGA 77219 29 100.0 32 ............................. TGGATTATGACGCCAGAGAGCTTCCTGTTTGC 77280 29 100.0 32 ............................. CTGGCTAATAACATCCCACTGAATATTATTTC 77341 29 100.0 32 ............................. AGGTGTGGCATGCGGGGAATTATGATCCGGTA 77402 29 100.0 32 ............................. TGACAACGGCCGGCCGCTCTTTTTGCGGTCAT 77463 29 100.0 33 ............................. ATCATCGGCATCATCTCGTGATACTCATCCGGC 77525 29 100.0 32 ............................. CCCAGGCTTTACGTGAGCTGGCGGATGTGGCC 77586 29 96.6 31 ............................A TACGGTCAAGCGATATCAGGGGTACTGTGTC 77646 29 100.0 32 ............................. GGCGCCGCATCTTTATCGTAAAGCATGTAAAG 77707 29 100.0 32 ............................. GTCCACACGGAAAGTCAGTGGATTGAGACCAC 77768 29 100.0 32 ............................. ACCGCTCACACCCAGACAAGCGCCACTAACGT 77829 29 100.0 32 ............................. AACGCCGCATCAGCTAAATACGCTAAAAAAAT 77890 29 100.0 32 ............................. CGGCTGATACTCAGGAGCAGGCCAGAGAGCGT 77951 29 100.0 32 ............................. TACCACCTGTGTATTGAGTTACGTCGCCGGGG 78012 29 100.0 32 ............................. GAGCTTCATCGGTGGTTCTGGGAGCAACGGGA 78073 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 78134 29 100.0 32 ............................. ATTAACATTGCAATTGAATTGACGCGTATGAG 78195 29 96.6 32 .......................G..... CAGGCAGCACGGCGGGTTTTGCCCGGATATTT 78256 29 100.0 32 ............................. CAAAACCAATAGGTGCTTTCCACATTGCAGAA 78317 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GCTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCACCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //