Array 1 759-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNW01000002.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 758 36 100.0 41 .................................... TGCACGAACTCAACGTCCGAACCCCGCGACCACGAGTCGTA 681 36 100.0 36 .................................... GTAATGGATATCGGTGTCACGCACGATAGGACTCCT 609 36 100.0 34 .................................... GGGGACCGTGGACAGGACTGATGTGCCGGAGCGG 539 36 100.0 42 .................................... ATGTTCGCGGAGCGGGCGAACTCGGTACGGAATTTGAAGCCG 461 36 100.0 35 .................................... ACGTCTGCGGGCTGTTGTAGCCGGTCGGCGAGACT 390 36 97.2 40 ..............T..................... GAGGACGTTTCTCGGGTCGAATCCGTGCGCGCGCACCACG 314 36 100.0 38 .................................... TTGTCGCTCGAGTCGAGCCACCGAGCCCGGGAGAAGCC 240 36 91.7 38 .............G.A.....A.............. ACGGTGCTTCGGAATGCCGGCGAGCAGCCGGCCACCAT 166 36 94.4 0 .............G.A.................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 98.1 38 GTGACTCCGGCCAACTCGGCCGGACTCCATTGCGGC # Left flank : TTCGGGGGAGCTGGACGCCGCTGCCGCGACGATCCGCTGGCACCCCTGTCAGCTCCCGCGCGGTTCGTCGCGGACGCCCATCTGTATCCGGCTCCTGGACTCCGGCTCGGCCAGCCCTCGTTTGATGGATCAGCACTGCAGGCGGGAGGTAAGGGTAGCTGCCGGTTGGGTCGCCCTCACCGCACAATGCGGCTACACACGCATGGCGTGTTGGGTTCAATCATTCGTTAGTGCCGGTGGTCCGCGTATCTGGAGAAATGCTCCGTTGGTCTGTAGGCGTTGACGAGGCGTTGCAACGGGAGCAGGAATCGATTCAGCATGATCAAACCGTATGCGAGCGGTGAAGTGCGACCTCCGACCCCGGGAACCGCTCGCGTGCAGGTCATGGCGGCAATTCGGAGGTCTGACGCCTCGGCTCGGCCCGGTCACGCACCTCCTGTTGGCCACCGCTCGCGAGCTGCTGTATTCTCGCAGGTCACACGGCCCGTTTTAGGCGAGCC # Right flank : CCCCGGCCCGGCGTGATCGGGCTGCCTGCCAGCACACCCGAGTTTTGCCAGATTAGTGCGTAGGCTGGCTGGCCGTGTTGATGGCGTCGAGCGCGTGTTGGAGGTCGTCGGGTAGCGGGTCGGCGGCTGTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACTCCGGCCAACTCGGCCGGACTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.00,-14.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 18308-14130 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNW01000022.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18307 29 100.0 32 ............................. CATGGGCCACATTCAAGACCGCTGGTACCGAC 18246 29 100.0 32 ............................. GGTGAGCGGTGCGAACGCGCGGGTGAGAGACG 18185 29 96.6 32 ............................T ACCGGTGTATACAGAACCACAACTGCCAGGAC 18124 29 96.6 32 ............................G GCGGGTTTCTGGTCGAGCTTTCCGGTGGAGGC 18063 29 100.0 32 ............................. TCGCCCCCGGCACGCTTGCCCACGGCAGGGGG 18002 29 96.6 32 ............................G GGCTGCGCATCAGCGAGTACGCGACGTGCTGG 17941 29 100.0 32 ............................. GTGTACTGCCGGTTCAAGATCCAAGACCGCCA 17880 29 96.6 32 ............................T GGACGTCGAGCGGGTGGATCAACAACGGTGGC 17819 29 96.6 32 ............................G GTCCGCACAGGAAAGACGACCGTGCCGGAGGG 17758 29 96.6 32 ............................G GTCCGCACAGGAAAGACGACCGTGCCGGAGGG 17697 29 100.0 32 ............................. TCGGACTTGGCGGCGGCACCACGGGCAGTACC 17636 29 100.0 32 ............................. CGTCATCCGGGTCGGGGAGGTACTCGTGCAGA 17575 29 96.6 32 ............................T ACCGCGAACTGAGAAGCCGCGAGCCCGACAAA 17514 29 96.6 32 ............................G CTGGCGAAACCATCCAGGAGATGGCCCGCATC 17453 29 96.6 32 ............................G CCTTTCACGCCCTGCACACCGAACGCGGCCGC 17392 29 100.0 32 ............................. TGCGGGGAAGAGTTTCGCAGCCATAGCGAGTT 17331 29 100.0 32 ............................. ACGCTCATTGTGGCCGTGGTCAACGATGTGCC 17270 29 100.0 32 ............................. AATCGTCATCCCCTAACCAGAAAAGAGATAGA 17209 29 96.6 32 ............................G AGTTAACACACGCTGTAGGACAGATTAAGGAC 17148 29 100.0 32 ............................. AAGGCCAACCTGTGGAGCAGCCCACCGTTGAG 17087 29 100.0 32 ............................. ACGAACTGCCGCGCCTGCTCCGGGTCGAACCC 17026 29 96.6 32 ............................G CCGACTCGTTGCCGATGCCCGTCGAGTGGCAG 16965 29 100.0 32 ............................. CACTGGAGGGAACGGGAACGGGAACGGGAACG 16904 29 100.0 32 ............................. GGCACGAGGTAGGCTTCACCGAGCGGTCCCGG 16843 29 96.6 32 ............................T GGGTGCTCATTGGAGCACTTCCCCGGTCTCCG 16782 29 96.6 32 ............................A CCCCACCCGACGTGGACGAGGGCGGCAGCGGT 16721 29 96.6 32 ............................A TGTCCGCCAGCGAAGCCGCCGAGTCGTATTTC 16660 29 96.6 32 ............................G GGTATTCAGGTCGGACTCGATATCCCGGATCG 16599 29 96.6 32 ............................G CGGTGCCGGGTTTTCTATTGGGGTGTAGCTCA 16538 29 100.0 32 ............................. GGGCAGACGCGGCCACCTATGGTCACGTTCAC 16477 29 96.6 32 ............................T GGCTAGATATCGGCGACGCATACGCGGACGCG 16416 29 100.0 32 ............................. CGTGATACGGATCCATCTCTACACGTGCCCGA 16355 29 96.6 32 ............................G TCGCTGGGGGAGATGCAGGAGTGGTCGTACTC 16294 29 96.6 32 ............................G GTGTCCCGAACGAGCGGCCCGCCGCCGACTGA 16233 29 100.0 32 ............................. GAAGCAGCAGGTTCGGCGCGCGCTCGAGCAGA 16172 29 96.6 32 ............................T CCGAACCCAAGGCCTGCGTCTGGATCCCGGTG 16111 29 96.6 32 ............................T CGGTTCCCGTCCCGGTGAGTTCCGTGGCGGAC 16050 29 96.6 32 ............................T CGGCAGCGCTGGCGGCGGCGTGCTGCGCACCC 15989 29 100.0 32 ............................. CCTGCGACGGGTCGGGCTTCGGAGTCCCCGGC 15928 29 96.6 32 ............................G GCAGTATGGGTGGCGTCCCGGTCCTCATCAGA 15867 29 100.0 32 ............................. GGTGTAGCCCCTGTGGGCGCGCTGTTGATCAA 15806 29 96.6 32 ............................G TGGCCGAGCATCTCGCCTACGCTGGCTTGCTT 15745 29 100.0 32 ............................. GGTCACGTCACCCCGGTCGACCGCTCGGAGGT 15684 29 96.6 32 ............................G CTCTCACCGAGATCGGGGGCACCCCACGGCGG 15623 29 100.0 32 ............................. TCTCGGAACATGCAGGACAGGGCGAACAGGGG 15562 29 96.6 33 ............................G GGAATGTTGATCATGCTACGGACACGGGTACAT 15500 29 96.6 32 ............................G CAGCTGGCGGATGTTGTGGCTGCGCTGGATGC 15439 29 96.6 32 ............................G GCATCAAAGGACAGTTCACGAAAGATCGACGC 15378 29 100.0 32 ............................. CTGGAGTACGGAGCGCATCGATACACAGCACT 15317 29 96.6 32 ............................G ACCGCACACGACGACGATTACATTGCCGCGGC 15256 29 96.6 32 ............................A CACCTTGCTCAACGCCGTACCGCCGGCCTGGG 15195 29 96.6 32 ............................G GCACTGGGGACGGTAATGGGGTGGTAGTCGAC 15134 29 96.6 32 ............................G GGCATGGTGGACGAGGATGGCTGGCTAACCAT 15073 29 96.6 32 ............................G TCCCGCGAGCCCGACAAACCGTCCGGCACACT 15012 29 100.0 32 ............................. AGTCGCCTAGCGACCCTGAGCTGTTTGGGGAA 14951 29 96.6 32 ............................T GTCCAGGGCGATGGTCTCTTCCCACGGTTCCG 14890 29 100.0 32 ............................. CTTGCGTGGTGGTCACGCCGGGAGGCGTCGCC 14829 29 100.0 32 ............................. CGCATGCCCCCGAGTGGGATCACTGTGTGCCC 14768 29 100.0 32 ............................. TCCTGGTCGACGGCGCGCAAGTCCATTCACCA 14707 29 100.0 32 ............................. CCGCGGGCGTGCTGAGGCACCTGCGCTGGCAG 14646 29 96.6 32 ............................T ATCGACCACATCGCGCTCTACACAGCACAGAA 14585 29 96.6 32 ............................G GCCAGGTCAGGCCACTACTCGGGCGACCCACC 14524 29 100.0 32 ............................. CCAGATGGGGTCGTTGCGGAGGACTTCTCCGG 14463 29 96.6 32 ............................T CCTGGTCGAACTGAGACGCCGGCGTATCCACA 14402 29 96.6 32 ............................T GTCCCGTCCGGAGACCACAGGAACACGACCTC 14341 29 100.0 32 ............................. CCGGAAACCGACCAGCCAGGCGGCACCGAGCC 14280 29 100.0 32 ............................. GAGCTGCGCATGCGTGGCCCGACCCGGCCGAC 14219 29 96.6 32 ............................G CTGGAGGTGACACCGTTGAGGAAGGTGACGTG 14158 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 69 29 98.1 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GGGCGTCTCCTACGGGGAGTCGCCATGACAGTCGTGATCCTTACTGCCGTGCCGCCCGGTTTACGCGGTCACCTCACCAGGTGGCTACTAGAATTGAGCCCGGGCGTATTCGTCGGCTACGTATCGAGTCGTGTCCGTGAGCTGATGTGGCAACGCATCGTGGAGTATGTGGCCGATGGGCGTGCTCTCATGGTGCACGCTGTCAATGGTGAGCAGCAGCTTGCGTTCCACGTACACGGGCACGACTGGGAACCTGTCGACTACGACGGTATCACGCTCATGCGTCGCAAAACTGTACCCGACTACGTACCGGACGTCGCCGGTCCAAAGCAGGTGGGACAGCGGCGGGGTACGTCACCGACGACTCCTGGGAGCGAAACCGTATGGAAGCGACGCGAAGCCCGGAAGAAGTTCCGCAAGAAGTAGTACCGACCGGACGTGACGAATCAAAAGTGAATGGATTTTGGCGATGTAGCTAGAAGATGTCCAGGTCAAGAAGT # Right flank : GCGATCACGCCCACATGCCAGCGTTGCTCCTGGTCCTTGCCGACTTCATAGCGTGGGGAGCCGAAGGTGACCTTGGTTCCATAGAAGGAGCCTGATGTCACCTTCGGCTCCCCACGCACCCGCTCCGCACGGACTGCCGCGCCCGCCGCTACACCGCGTAGGGCCAGCCGATGAGGGAGTACGCGCTGTACCAGGAACCGAGGGCGACGATTCCGGCCGTGCCGGTGACGAGGGTGGCGGTGTGCCGCTTGGCGAGCCCGATGGCGACCGGCATCAGCAGGACGAACGCGGCAGGGAGGAGGAACCGTGGTTTGCTGAACTCGATACCGGAGACCGCGATGACCAGCAGCACGGTTCCGATGCCGTAGAGAACCAGGGGCCAGGCCATGCGGTTCAGCGCGGTCAGCACGGCGAGCACGACCGCACCGAGGACGATAAGCACGCCGCCGAGATCCATCGCCGGCGGGTCCCCGGTCATCGTGTTCGTGACCCACGCGAGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31223-27709 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNW01000022.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 31222 29 96.6 32 ............................G TCGTGCGATGGTGCGCCGCATTGATCAGCGAT 31161 29 100.0 32 ............................. CCACTAGACCACAACCAACCCTGCTACACAAC 31100 29 96.6 32 ............................G CTTCGCCTCAAACTCCGAGATGCCGTCCGCCT 31039 29 96.6 32 ............................G AAGTCCCTCACGAAGCCGTTCGAGGAGGGGGC 30978 29 100.0 32 ............................. TCCTCCTTGTTGTTGATGGCCTGCCGCTGCAT 30917 29 96.6 32 ............................G TTCCTGCGTGACGTCGAGGCCAAGCGGAAGAT 30856 29 96.6 32 ............................A CCCAGTGGCGCAGCGAGATCAAACGCGTCGTC 30795 29 96.6 32 ............................G ATCAGCTCGGCAAACCCGGCGACGACTACGGC 30734 29 96.6 32 ............................G TACGTCATAGCGACGCGGTAGGCTCACGAGCG 30673 29 100.0 32 ............................. CTGAAGCTCGGTCATGCGAACTGGTCGAACGT 30612 29 100.0 33 ............................. GGCGACACAGCTCGGCTAGAACGTCGTATGGCG 30550 29 100.0 32 ............................. CGGCAGGCGTTGAACGGTATCCAGGCGTTGAT 30489 29 100.0 32 ............................. TGCCCCGGCGGTGGTTCGGACCTCGAGGGGAC 30428 29 96.6 32 ............................T GGCAGCGATCACACCCGGCACCGTCGATAGCT 30367 29 96.6 32 ............................G TACGTCATAGCGACGCGGTAGCCACTCACAGA 30306 29 96.6 32 ............................G GTGGGAGCGCCGGGAAAATCCGCACCAGCCTC 30245 29 96.6 32 ............................G GCCTGCCAGGATTGCATGATGTTCCTCGTGAA 30184 29 100.0 32 ............................. GTTTCCGGTGGCGTGGTCGACGAGGTGCACGT 30123 29 96.6 32 ............................G GAAGCGCCCAACACGACGAGCCATACGCCAGG 30062 29 96.6 32 ............................G GTACAGGTCAGCGCGCATATGTTGCACCATAA 30001 29 96.6 32 ............................G TTGACCCGTGACAAACCTCGCCGTCTTCGTGC 29940 29 96.6 32 ............................G CGACGACGGCGTCCAACTCGGGCTGTGCCGAC 29879 29 100.0 33 ............................. ACCTGGATCGTGCGGCACGACGGCATGCCTGGC 29817 29 100.0 32 ............................. AACCCCAACTCGGGATCGACAGAGAGCACCGT 29756 29 96.6 32 ............................T CCACCTGTGCGGGGGAGCGGACCGCAAGGAGC 29695 29 96.6 32 ............................G TCGCCGGTGCCGCGGATCTCGTAGCGTGCGGG 29634 29 96.6 32 ............................G AACCCCAGGCGCTCACCTGGAGCTGAGTTCGT 29573 29 100.0 32 ............................. TTGTCAGCCAGACTCACGCTGGCACTCCCCAC 29512 29 100.0 32 ............................. CGTTCACTGAGCAAAGCGATCGCCTATGCCCA 29451 29 100.0 32 ............................. CAGACCCGCTATCCGAGGAGTCCAGACCTGTC 29390 29 100.0 32 ............................. ATACGCATCGGCATCACCTACTACCCGACGCC 29329 29 100.0 32 ............................. ACCGCGCTGAACAACGTCGCGTCCGCAACGGT 29268 29 96.6 33 ............................T GGGGGAGGTGGCGGCATGACCACCACAGAAAAC 29206 29 96.6 32 ............................G CACGCCGCGAGTGGTGGCGTAGCCGGTAACCG 29145 29 100.0 32 ............................. TCGACACCCCAACCGGGACCAGCGTATATGCC 29084 29 100.0 32 ............................. AGCCCGGCTCAGGTGACGTTCACTGCCCCCAC 29023 29 96.6 32 ............................G GTGAGTTTCAGCGCCACTGTGCAGGTTGATGG 28962 29 96.6 32 ............................G GAACCCTGCCCGAGCTGGGGCGGATCCTGGTG 28901 29 100.0 32 ............................. CTGCAGCTCGCTCTCAAGTTACACCGCCCCGA 28840 29 100.0 32 ............................. TCGAACCCGCGGTCAACCGTGACGGCAGTGCC 28779 29 96.6 32 ............................G GAACTCATCAACGTGATGGACGATATCGCCCG 28718 29 96.6 32 ............................G CTCACCCGGCTCGCGCAGTTTGCCGCGGCGCC 28657 29 96.6 32 ............................T GGTGACACGAGCGCAACGGGGATCCCGGAGGA 28596 29 100.0 34 ............................. TGCTGCGAAGCGAGGTTCTCGAAACTCTCGACGC 28533 29 100.0 32 ............................. GCCGGGTTGCGCATGCGCATCACTACCTTGTG 28472 29 100.0 32 ............................. GATGGATGCACAGGTGGAAGCGGCACGTCGAG 28411 29 100.0 32 ............................. CCGCAACCACTCGGTTATCAGCCGAAGTAGCG 28350 29 100.0 32 ............................. GGCAACCCACACATCGTGATCACTCGCCTTCC 28289 29 100.0 32 ............................. GCCTCGATCACATCAGGCGGCGTCGGATCCTG 28228 29 96.6 32 ............................G GTCTGTAGACGCGCCGCGAGCCGCTGCATGTC 28167 29 96.6 32 ............................G CTGTACCGCAGGATCCAGCCGTGGATCCCGCA 28106 29 96.6 32 ............................A CCCGGCATCGGCGGCACGAGACTTCAGAACGT 28045 29 96.6 32 ............................G GGTGATCGAGAGAAAGCCGTAAAGAATACTGC 27984 29 93.1 32 ....................A.......G CTACTCCCGACCCCCACGTCGACGGACGCGAA 27923 29 96.6 32 ............................G CTGGCGGGGTGTTTCTGCCGCTCCCGGCGAGC 27862 29 100.0 34 ............................. ACGAGCTTGCGGCCGGGCCCGAGCTGGAACATGT 27799 29 89.7 32 .CT.........................G GCGTTGGCGACACTGAAGAACCCCACGCTGGC 27738 29 75.9 0 C..........T..TT........G..AG | C [27712] ========== ====== ====== ====== ============================= ================================== ================== 58 29 97.5 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CACTGTCACCGACCCGCGGAGCCTGCGCCGCATGCTCGCCGACGTCCGCACCACGGGGTTCTCCATCAGCGACCGCCAGGTGACCATGGACGCGCTCTCCGTAGCGGCCCCGATCCACAGCAGCCGGGGTCACGTGATCGCCGCGGTCTCGCTGGTCGTGCATCACGGCACCGTCTCGCCCCACTCGCTCGCGCCGCTGGTCCAGACGAGCGCCCGCGCCATCTCGCGCACGCTGTCCGGAGCTGCCTAGCGTCGCCGGTTCGCGCTTCTGCCCCGACCGCGCGTGTAGCCTGACGTCGCGCTCGGTTCTTCTCTGCCGCGACGTCGGAGAGGCTTCGCGAGTCGGGCATCGGCGGCGACTGCGTTCCGGGAGGCACCACATGTACCTGAACGACCTAGTAACGGACGTTGGTGAGCATGGGGGCATCCGCCGTGGCTTGGCTCAGATGAAACTAATAGAAATTCGTCGAGAGAGTAGATAGAATGCCAGGTCAGGAAGT # Right flank : CCAGTCAGGTTGTTCCTTCTCTGAGCCTGTGTGCCAGGTGAGTGGCGTCGTGTATGGGGAACTGCATGATCGGCCACCGTTGCCGGAGCGTTACCGGATTCGTCTGTGCTAGTGAACATTTGAGCTTTCTAAGCACTTCGCCGTTTCCAGTGTCGGTGGTGCGTGTCACAGTGGCTGAGCTGCTGAATTCGGGGGCAACGGCAGTTCGCGACACAGTGGTGCGGGGTCATATCGGCGTTGGAGGTACAGCTGTATGCAGCTGAGCGAGGCCGCTCGGTCAGTGTGGGCGAAGTCGGTCAATGATGACGGTGAGTGGTTGCCACTTTGGCAGCACATGGATGACGCTGCCGATGTTGCGTCTCTGTTGTTCGACGAGTGGCTCGCTCCGAGCGTGGCGCGGTTACTGGCCCGGCAGTTCGATGGTGACATGGAGGACGCGCGTAGAGCTGTCGTCTTCCTGGCCTGCGTACACGACCTGGGTAAGGCGACTCCCGCCTTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9780-9006 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNW01000027.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 9779 36 88.9 40 ......T...G.....A.................G. ATACCGAGCCGAGGCCGTTCGGCACGTTCCTGATGGAGCA 9703 36 97.2 38 ..................A................. GGTAGGTCACGTTGTTGTTCGACAGCGGGGTGTTGTGC 9629 36 100.0 38 .................................... AAGGACATGCCCGTCAACCCGTACCCGAGCAGCCGCGG 9555 36 100.0 38 .................................... GACGCTGTCTCGGGAGAGCCAGCGAGTTCGGCCGAGTA 9481 36 100.0 36 .................................... GTTCTGCAGGATCTGTGAAGACCACAGCTCCGGCAC 9409 36 100.0 34 .................................... CTGACAGGTCAGTCACACGCTCTTCTAGCGCGCT 9339 36 100.0 37 .................................... ACAAGAACACGCGGACCAACGAGCATCAGGAGATCTG 9266 36 100.0 39 .................................... GGGGTTGGCGAGGGGTCTGTGAGTTTGTCCGGATGTTGG 9191 36 100.0 41 .................................... CCGTACCGGCCGCCGGCGCCCTGCCCTACCCGCGCGATCAC 9114 36 100.0 37 .................................... TTGAAGACTTCATGGACGGGCTCGGCGAGTTCTTCGA 9041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 98.7 38 GCCGCAATGGAGTCCGGCCGCGGAGGCCGGAGTCAC # Left flank : CGCGAGCACTTAGACCGCGTCGGCGAGATCCTGCTGCTGCTCGACCGGATCGTGGACGGCGAGGACGTGCGCGTTCAGCTGGTCGACAGCGTCACGGGTCAATGCCACAAGCCGGACGGAGCGCGCCAATGATCCATCGTGACCACCACATGCTCGCGCGGCTGGCCTGTACGCATCGCGAGATCACGGGGGCCGTACTGCGGATGGTGCGCTCCATCGAGGAGGACCCGCCCCCTGACGAACAGCTCCGTGCCCTCGGCAGCTACCTCCGAGCGGTCGGCGAACAACTGGACAGCCGCACCGAGGCCGTCGCCGACATATTGGCCGACCCAGACGACTGAACGACTGGTCGGTGCGATGCGAACCCTGACCGATTGACCGGCCGAGCTCGTCAGTGGAAGCGAACTGGAGTACGCCACTGGTGCCCTTCGGAAATGGAACTCGGCCGTACAGTCCGAGCCACCGACCACAGTCGCCGATCGCTACAACTGACGAAGTGC # Right flank : AGCTCCACGAATTCGCAGGCTGTGACCAGGCATGATACGGCACTCTGCGAGCGGTTGGGAAGATCGGCGCCGTGAGCCCGCGGCCGACCCTTCAAACGAGCCCCGAATTGGCCCTGACCTGCATGCGAGCACTCCCCGGGGTTCGAGCTCGTATTTCACCGCTCGCAAGGCCCCAGCACGCCCGAAACAGGCTCGCACCCGTGGAGATTGATCGCACCACAACCATCGAGCGGCCGAGTGGCTCGTTCGGCCGCCACCTCGGCCGATGTTTGCATGCAAACGCCAGGGATGAGCCCGTACTCTTGGTCCGGTTCGTATCCGCTGCTACGACCATGGCCACGTCAGCGCATCGGATGCGCCGGTGCCACTATCCGCATCATCGCTCAATCAGTGCCGAGTGGTTCGTGGCCGATGAACACACCAGTAGCCGGGCCGGACATCGGTGTGAGCTGGTACAGGTCATGTACGTGGAGAACGTTCTGGCTACCTTCCGCTTGACG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCCGCGGAGGCCGGAGTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 22349-21123 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZNW01000027.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 22348 36 88.9 40 A.G..CC............................. TGGTGTCCGTGGTGCTGATCTGCGTCGACGCGGTACCAGA A [22344] 22271 36 100.0 41 .................................... TCTACCCGCGCGGCGTCAGCGTGCCGACGATTGCGCATATC 22194 36 100.0 36 .................................... GAACAAGTTCGGTGCGGTTCAGCAGCGGGTGCAGGC 22122 36 100.0 35 .................................... GATGAGCTTGAGGAGCGTGTTGAAAAGCTGGAAGG 22051 36 100.0 38 .................................... CTGCGCCGCTGCGTCACCGAACTCACCCAGTCCGAAAA 21977 36 100.0 38 .................................... CGGGAAGATCGACGACACCAAGATCCTGCTGTGAGCTG 21903 36 100.0 36 .................................... CGGTGAGTTCGGAGCCATCAGGGTGCGGGACAACCC 21831 36 100.0 39 .................................... GTCGTTCTGGGTTCCGGGAGGCTGCAGCTGGACGGAGAA 21756 36 100.0 36 .................................... GTGCGCGAGATCCTGGTGGAGCCGATTCCATGACGT 21684 36 100.0 40 .................................... ACCAGCTCCATTCCTGTGCCGAGTACGTCGTCGAGATTGT 21608 36 100.0 39 .................................... CGCCTACCGGTACGCCGACGTGTACCTGGACGAGGACGG 21533 36 100.0 36 .................................... CAATCGGTAGCGCCATGGCAAGCATTCTCGGATAAG 21461 36 100.0 40 .................................... CCGCTTCACGATGAGCGGCGAAACGGCGAGCTTCTCCGAG 21385 36 100.0 41 .................................... CCCGGTCTCGATGTCCATAACCATAGGGCCGTCCCACTGTT 21308 36 100.0 41 .................................... AAGAACTACTTCGACGGCGACTACTGGCCGCTGGCGTACTG 21231 36 100.0 37 .................................... ACGTAACGGCACGTACCGTGTCCACTCACTCACCGCA 21158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 99.3 38 GCCGCAATGGAGTCCGGCCGCGGAGGCCGGAGTCAC # Left flank : GGCAGCGCCAACCTACTGGTCCGATACATCAACCAAGGCCGGGCCGAAAACGACCGCTCCTCGATCTCTCCGCGCCGCCTCACCAGCCTCATCCTCACCCACCCTGAACACCTCACCGATACCCAACGGCACCTGCGCGACGAACTCACCAGCGCCTGCCCCGAGATGATCGATCTCGGCGACGCTGTCCGCAGTTTCGCGGACCTGCTCACACCCAACCCAGGCAACGCCACACGGCTACGCGAGTGGATCACGGCAGTGCGCAGCTATGATCTGCCTTACCTGCACTCCTTCACCCGCGGGCTGGACAAGGACACGGCCGCCGTGACCGCTGGGCTCACCCTGCCCTACAGCAACGGCCCCACCGAAGGCCACGTCAACCGCATCAAAATGATCAAGCGACAAATGTACGGCCGAGCCGGACTCGACCTGCTCCGCAAACGCGTGCTCCTCACCAACTAAGACAACATCACAAGATCAGCGACAGAGCCAACGATCTG # Right flank : GGCTCCCGAAATTCGTGGGCCGTGACCAGGCATAATACGGCACACTGCGAGCGGTTGGGAAGATTGATCGCGTACCCACCTTTGCGCGCCGCACAAACGATCTCGATATCCCTTCTGACCTGGGCGCGAGCGGTCCCCGGGGTACGAGGTCGCATTTCACCGCTCGCGATGATCACACGATCTGTGGCCCGGAGTCCGGCAACCGCCTCGAGCGCCCCCACGTACGTACCGTCGCTGGGTTCCGAGCCTCCCCAAGGTCGATCTCCACGACGCTGTCTTCCGCGAGATGCATCACCTCGGTGACCGACGCTTCCAGCTCGGCACGTTCTGCCTTCGATAGGTCGCAGAGGAATACCGAGTACTGTAGCCGTTCACCATGATCCTCCATCAGGTTGCACACGCGCCGCAGGCGCGCCGGATCAGCGATGTCGTATGCCAGAAGGTAGCGACGTCGAGCCATGCGGCGCTCACCTGGTAATCATCGGGGTGTACTCAGGAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCCGCGGAGGCCGGAGTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //