Array 1 543561-544443 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWC01000001.1 Escherichia coli strain VREC0287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 543561 29 100.0 32 ............................. GGCGACCGGCAGGCGGCCTATGCGTTTTTCAC 543622 29 100.0 32 ............................. GCCTTATCTCTGCTTGGATTCTCTGCTGATGT 543683 29 100.0 32 ............................. CGGCGCACACGTTGTATTTGTGCTGCCTATGC 543744 29 100.0 32 ............................. CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT 543805 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 543866 29 100.0 32 ............................. CTTGCCGCGCCAGGGTATTTTTGTGTGGTCGT 543927 29 100.0 32 ............................. TCCGCAACAACTCAGAGAACCAGACACCAAGC 543988 29 100.0 32 ............................. TTTCGCCGCCGGGAAAATTTATATTAACGTTG 544049 29 100.0 32 ............................. CGAAGCACGTCGGGGACCGTAAGGCGTTTGAA 544110 29 100.0 32 ............................. ACGCCGCTATGAAGTTGAGGAAAGGGCAAAAA 544171 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 544232 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 544293 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 544354 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 544415 29 93.1 0 A...........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTGAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACATCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCATTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAGAATAGCTCGCCATATATGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATGCTTAAACCGTTAAGAAATTTTCATATATTATTTTTTTTAATGTTGAATTAATGTCTATTAATTTTTTCTTCAGGATAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCAGAAAAATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 569932-570571 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWC01000001.1 Escherichia coli strain VREC0287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 569932 29 100.0 32 ............................. TGTCCGAATTACTACACCGCCGAACAAAACGC 569993 29 96.6 32 ............................A TGATCGCCGCCATGATTACTTGCCTTTTTTGT 570054 29 100.0 32 ............................. GTCAGCACCGCGTGCTCTGCCTGCAGGCTGTC 570115 29 100.0 32 ............................. TCTATATCGGTGCATATATCCCCGACGAAAAA 570176 29 100.0 32 ............................. TATTCATATAAATCCTTATTTTAGATACAGCG 570237 29 100.0 32 ............................. CCAGCTTCATAGATCTGGCTCACGTAGAGCGC 570298 29 96.6 32 ............................A GCGGCGCATAACTGATAAACAATAAATGCCGC 570359 29 100.0 33 ............................. GGCCATCACGGTTTTATTCAGGTTACTGCAGAC 570421 29 100.0 32 ............................. CTGCGCGATCCAGCGCTCGACTTTGATCGTGA 570482 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 570543 28 75.9 0 ..A........C..T....A..-.C...C | T [570562] ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //