Array 1 17168-15371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134385.1 Gardnerella vaginalis strain NCTC10287 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17167 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 17106 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 17045 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 16984 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 16923 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 16862 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 16801 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 16740 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 16679 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 16618 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 16557 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 16496 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 16435 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 16374 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 16313 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 16252 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 16191 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 16130 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 16069 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 16008 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 15947 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 15886 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 15825 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 15764 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 15703 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 15642 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 15581 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 15520 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 15459 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 15398 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : TAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //