Array 1 4465766-4459385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011052.1 Halomonas sp. KO116 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4465765 29 100.0 32 ............................. ACGCCTCCACCCACTGAGTCACTGAACAAGTA 4465704 29 100.0 32 ............................. GTTTGCCGCGTGATGTAATAAAGTTGAATCTT 4465643 29 96.6 32 ............................C ACATCTAAATGCCGCTGAATATATTCAGCAAT 4465582 29 100.0 32 ............................. CGGATTTAAACGGCGCAGAGCATCAAGAGCTT 4465521 29 100.0 33 ............................. CCGTATGCGAAGCGTGAGAGCAACATTGCACGG 4465459 29 100.0 32 ............................. GCTGGCGGGCGGGATCTGCACCCACGTCGGGC 4465398 29 100.0 32 ............................. CCCCATATCTTTTATGGGGCTTTTTTATGTCC 4465337 29 100.0 32 ............................. CTTACAGGCGCGGCTGCCGACCTGCTTAACGC 4465276 29 100.0 32 ............................. ACTTGATGGGCAATGAATAAGCCATTCGATTA 4465215 29 100.0 32 ............................. CTGAAATACCCCCCGGCCATCTTCGGCATAAA 4465154 29 100.0 32 ............................. AAATTATCTACAATCAGAAGCTTACAGGCGCG 4465093 29 100.0 32 ............................. TCGTAGAAATTCAGCGTGTTGGGGAAGCCGAA 4465032 29 100.0 32 ............................. TTTCATATCAGCGGTTCCGCATCTCCAGCTCA 4464971 29 100.0 32 ............................. TGGTGAATATGCCCGTGCCTAAGATGCGGGCT 4464910 29 100.0 32 ............................. AATATGCACGTCCGGATGGGCGCAGGTTCATA 4464849 29 100.0 32 ............................. AGCCGTGATATGGGCATGTCTTGGTTATCGGT 4464788 29 100.0 32 ............................. GCTCGTATGTTTATGTCGCTGCTACCGCCTGA 4464727 29 100.0 32 ............................. CCCTATTAATCGATGGGGCTTTTTAAATGGCA 4464666 29 100.0 32 ............................. TAGATAGATGCCCTATCGCCCCGGCCTATACC 4464605 29 96.6 32 ............................T TTATTATCACTAGACAAACCAGGGTAATAAAC 4464544 29 100.0 32 ............................. TTACAACAAAAGCGCCAAAGCCGAAACCAAAA 4464483 29 100.0 32 ............................. TGATCGAACAAGCCCGCGCCGAGTCGCGCAAA 4464422 29 100.0 32 ............................. ACCGTTATAGGCACGGATAGAAACAGCGGTCG 4464361 29 100.0 33 ............................. CTCTCTGGTATCCAAATAACTGGCTTCACTAGC 4464299 29 100.0 32 ............................. TGCTTACGATGCGTCGCCCGTTTTACAGCGGT 4464238 29 100.0 32 ............................. CCTGCACAACGTGTCAGCACTGCAGCTTGTTA 4464177 29 100.0 32 ............................. GTTGGAGCCTGCTGTTGTGTCACCCGTTGGTA 4464116 29 100.0 32 ............................. CATACGAACGGAGTTTGCTGGAATGAAGCTCG 4464055 29 100.0 32 ............................. CGGGCACCGCCGACTGGGTTCTCTGTGTTGCG 4463994 29 100.0 32 ............................. GCGTAATAGAAGTAAAAGCCTCAGTAGCAGCA 4463933 29 100.0 32 ............................. CGCTAAACCGCAAAGGCAACGCGCTGGAAGCG 4463872 29 100.0 32 ............................. ATGTAGTTATCATCAGCGGTCACTTCACCCAT 4463811 29 100.0 32 ............................. ACGCCCTGAGTGAGCGAGTGCGGGCTGCGGTT 4463750 29 100.0 32 ............................. CTCTTTTTGCACCAGCTCGTCGCGCTTTTGCG 4463689 29 100.0 32 ............................. TCTTTGCTCTCCACCTCGTCGGCGTACTCCAT 4463628 29 100.0 32 ............................. CATCAGTAGGCGTCAGGGCTGCAAGATCAAAG 4463567 29 100.0 32 ............................. GCGCTGATTGATGACTGCCTCAAGGACTGGAC 4463506 29 100.0 32 ............................. GATGAAAAAGATGCGGCTTTTTATTCGTAGCG 4463445 29 100.0 32 ............................. GCATACACTTCATCGGTGTAGTGACCGCCTGA 4463384 29 100.0 32 ............................. CAAGTGGCTGTGTCGCCTGGGTATACCACGGA 4463323 29 100.0 32 ............................. TCAGGCAGATTGAATCGTTTAGCGAGATCATC 4463262 29 100.0 32 ............................. ATGGCGGGGATGGTGAAGATGATTCTGGCGGC 4463201 29 100.0 33 ............................. GCCAACGGCTGCGCGATCGACAGCCAGGCCAGC 4463139 29 100.0 32 ............................. TTCTGGCCCATTACGTTCCCAACACAATCAAC 4463078 29 100.0 32 ............................. GCTGGCACGGGCAACTGCCGGTCCATACAGGA 4463017 29 100.0 32 ............................. TAGTCCATCTCCCGTGGTTTTGTCGAACTGTC 4462956 29 100.0 32 ............................. ATGATAGCAGCGGAACGCGGTGAAACTATGCG 4462895 29 100.0 32 ............................. ATCACGCCGAGGCCGAGCGCGAGCTGGAACGC 4462834 29 100.0 32 ............................. GCATTCCCCGCACCATCGTTGCCGATACGCGA 4462773 29 100.0 32 ............................. CCTCCTGCGTGCCTTCGACGCGCTCTTATGTC 4462712 29 100.0 32 ............................. ACTACAGGTTCCACTTCTTCCCCTGGTTTGAA 4462651 29 100.0 32 ............................. GCGTGGTTCTAATGGCTACGGACACTGAGTAC 4462590 29 100.0 32 ............................. GTGGTTTTGGATCTGAAATTGGTAGCCGGGGG 4462529 29 100.0 32 ............................. ATGATGGGCAGACTTTCCCTTGGACGTTAATG 4462468 29 100.0 32 ............................. TCGCCCGCGTTGGCCTTTCGGGCCAGCGTTGA 4462407 29 100.0 32 ............................. AATGCGAACAGCTAGCGGCGCACGTTGAACGC 4462346 29 100.0 32 ............................. GCTATAGCTGGGGCACGCCCACGGATGCATTG 4462285 29 100.0 32 ............................. GGAACTCGGCTACCATGTCGTCGGCCAATGCC 4462224 29 100.0 34 ............................. AGAACTCTCCGACGTCATAAACAGCCTCGCCTGC 4462161 29 100.0 32 ............................. TCGGTTCTGGCGCAGCTCGATATGTTCCGTCG 4462100 29 100.0 32 ............................. CTGCCCATGTAGTCGGTCTGCAGGGTCACGGA 4462039 29 96.6 32 ............................A TGTTCATGATGGCGCGTTCGCCGTCACGCGTG 4461978 29 100.0 32 ............................. AAGAGGAAGCACCAGGTGGTAGCAATTCATGG 4461917 29 100.0 32 ............................. GACGGGAACGGCATATCTGCGGGTTCTATTGA 4461856 29 96.6 32 ............................A GACTATTTCAAGCGACTCGCGATCTTGATGAA 4461795 29 100.0 32 ............................. CAGCTGCGCACGATCGGCATGCTGGACGCCAA 4461734 29 100.0 32 ............................. CTCACATACATAGAGCCCACCGCCAAGGGCAA 4461673 29 100.0 32 ............................. ATGGCGTGGGTATCTCTCCAACTTCTATATCA 4461612 29 100.0 32 ............................. ATGCATTAGATGGGTGGAGGTCATCAAATAAC 4461551 29 100.0 32 ............................. ATTCATTAAACAATCCTCACAACACGCAGCAC 4461490 29 96.6 32 .T........................... GATTGTTCAGGGTTGGGGCTTTCCAATAGACG 4461429 29 100.0 32 ............................. GATCTCGGGAGAATCCCCAAGCCGACAGACCT 4461368 29 100.0 32 ............................. TTTTCATCAACCTGAACTACTTTGATGAGATT 4461307 29 100.0 32 ............................. GTCCTTATTCTGGCGAGTATGAACCTTTTGAA 4461246 29 100.0 32 ............................. TTTGGTGAAAATGTAGAGGCTGAGTTGGCGGG 4461185 29 100.0 32 ............................. GCTTAATTTTAATAATCATATAAAAAGCTAGC 4461124 29 100.0 32 ............................. CCAAAAACATCAGAAGACAGCAGCTCGATCGG 4461063 29 100.0 32 ............................. GCATGAGCCGCGAAGCCATCGACTCAATTAAG 4461002 29 100.0 32 ............................. TACCTACCAGGAGTTAGTCCCCATAAATTAAG 4460941 29 100.0 33 ............................. TTAATCACCAAGGGAGACTGCGAGGAGAGCAAC 4460879 29 100.0 32 ............................. ATATGGCTGAACGTACAGGGATGACAGAAGCT 4460818 29 100.0 32 ............................. GCCAGCCCGGTAGAGCAGCGCAAAGCCCTAGA 4460757 29 100.0 32 ............................. TCTCGTTAATCATTTTGGCGGTCAACTGCACA 4460696 29 100.0 32 ............................. GTTCAGTGTGGCACCCATGATGGACTGGACGG 4460635 29 100.0 32 ............................. CCTGTATGCCGCCCACCATCCTTGCGTCGAAT 4460574 29 100.0 32 ............................. CTGCCCTACCGGCTCCCCGCGCATCTTCTCGC 4460513 29 100.0 32 ............................. GCGGTATTTTTGTCTCCTCATAAAAAATATGA 4460452 29 100.0 32 ............................. AATTGGGTCGGGAGCTGTCGTCGTCATGCCGC 4460391 29 100.0 32 ............................. CCTGATGTGATTGTCTCCCCCGTTCTGGCAGA 4460330 29 100.0 32 ............................. GGGATAGAAAATGCTCGACATGTTGGGCCATG 4460269 29 100.0 32 ............................. ATTCGAGCGCTAGGAATTCACCGTCCCGCTGG 4460208 29 100.0 33 ............................. TAACCACGAGTGGCGACTTTGTTAATCTCCCAC 4460146 29 96.6 32 ..........T.................. AAACCAACCAGGGCAAGCCCTGCGGCGGCTGG 4460085 29 100.0 32 ............................. CCGAAGGACCCGGTGAGCCCTGGTCGTACCAT 4460024 29 100.0 32 ............................. ACTAGTGTGCGTGTATATTGTGATGTTTTCAT 4459963 29 100.0 32 ............................. TAGCGCCCGTCACCCACCGCAGCTATACCCTC 4459902 29 100.0 32 ............................. TGGCTAAAGAAGCCGCTGAGAAGGCCGAGACA 4459841 29 100.0 32 ............................. ACTGATCACTATCCAGGCGCGACCGGATGCCC 4459780 29 100.0 32 ............................. CGGTTATTCGGCAGCGAGAGCAGCCAGGCGCT 4459719 29 100.0 32 ............................. CCAAAGACCTAGCCGCAGACGACTACCGCGCC 4459658 29 100.0 32 ............................. CCTAGAGCGGCTACTGCTACTACTGCACCCAC 4459597 29 100.0 32 ............................. GTAAATAAAGAGGCCCATGGTCAGAACTCCAC 4459536 29 100.0 32 ............................. ATTCATTTATGATCGTTTTCTCTTAAATTGGG 4459475 29 100.0 33 ............................. CCGGTGATTTTTCAGCGCCGGCGCGATTACAAC 4459413 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 105 29 99.8 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : GGTGATATTCAGCCGCCGCCACCAGCACCTGATGCAGTACCGCCTGCGATTCCCGAACCCCCTTCGGTTGGCGATGCCGGGCATAGGAGCGGATAAATGGCAATGCTCGTGGTAATTACAGAAGCTGTACCACCGCGCCTACGCGGCAGGTTAGCAGTGTGGCTCTTGGAAATTAGAGCCGGTGTTTACGTTGGCGATGTGAGCCGGCGCATCCGCGAAATGATTTGGGAGCAGGTAGAAGCCCTGGCAGAAGATGGCAACGTAGCAATGGCCTGGGCCAGCAACCATGAATCAGGGTTTGAGTTCCAAACCTATGGTGAAAATCGCCGAGAACCGGTCGACCATGACGGACTACGTTTGGTGCGCTTTTTGCCGCCACAAGTTAACTAATTGATTTTATTTGATCTTTAATAATTTAATGTGGTTAAAAAGTAAGCAAAATAGCTGGTGGGTTTTTTATCTGCTATTTTCTTTTTGTAGATCAACTATCTACAGCAAGT # Right flank : GCGTCAGCTGCCTCTTCACTCATCACGCAAGCCCGCTCCCCTCGCTCGCGGGTCTTAACATAATATCTGCCGCCCAGGCAGCCTAAAGGGGCGTGAGCGAAAGCTACCTTCTATCAGTGCAATTATCAGGATGGTAGAGATACTCCCATTCTGAAGAGTGGCTAGGAACCACAAAAAAAAAGCCACCGCGCGTTGGGTGGCTGTGCATGCTTAATGGGGCAAAACGTTAGGTGTTAATCTTCTTTCGGCGGGGTTTCCATGGCGCGTTTGTCGTCGGGAACTCTGACGATGTGGCCGATATCGAGCTTGCTGTGGCTTTGGTGGCGGCCGCCTTTGGCGTCGATGATCGCGACGACTTCACCAATGCTTACTGCGTCATCTTCGCGGTATGCTTCTACCTTGATGCGTACCATGACGCCTTGGTAGCGGGCAGAAATAATGTCGCCTGGGTCGGGGGCGTTATGGTCGGGGTCGTTTTTAAAGTACTCCGCTACGCTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //