Array 1 843323-841173 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 843322 36 100.0 36 .................................... AATGTGAGACTGAATGACTGATAATTAGGTTACACG 843250 36 100.0 36 .................................... GAAAAAATATTTATCGTTCAGATGGAATTTTGGGGT 843178 36 100.0 34 .................................... GTAACCTGGTTAGAACATGAGATCAACCTTATGA 843108 36 100.0 34 .................................... CTGTTAATGATTTGCAGCATGGAAGGACGGTACA 843038 36 100.0 35 .................................... AATAAATCTTGTGGGAAGGGGCACTACATTTGAGA 842967 36 100.0 35 .................................... CATCATATAGAGATAGAGCACAAGCTGGAGAAGTT 842896 36 100.0 33 .................................... TTCGACTGTGCACAGGGGACAACTCAAGTCCTC 842827 36 100.0 34 .................................... CAGCGTGAATATCAACATCTGCAACTCTGCCCCC 842757 36 100.0 35 .................................... TTGCGGCTAATAGTGGTGCCACTCAAGTCACCACA 842686 36 100.0 36 .................................... TTACAATTTTTTGAAATTTGTTGTTCGACTCTTCCT 842614 36 100.0 34 .................................... AAGCGGGTGCCCTTTAAGCACCAATACCTCATCT 842544 36 100.0 34 .................................... CCGCTTGTTTCCATTCTATGAGGATGGAAACCTT 842474 36 100.0 34 .................................... AGTATCTGGTAAAGATTTACCTTCCCTATAGATT 842404 36 100.0 33 .................................... TTTAAGAGATTTTAGGGGGGCCCTCTTTTAGTT 842335 36 100.0 34 .................................... CAGTTCTGTAAGCAGCTCCTTTACGGAAAAAGTA 842265 36 100.0 34 .................................... CTCACATCCGTACTTTACGTGACCAACGTATTGG 842195 36 100.0 34 .................................... ATAGACCCCATGGGTCTACCTTGTAATTCGAGAT 842125 36 100.0 36 .................................... TTGTTATATGCTATAAAGGTAACCTGAAATCGGTTA 842053 36 100.0 34 .................................... ATTCGTGATACCATCGCCTGGCGACGGGCTATTT 841983 36 100.0 34 .................................... GATGTCCACGTAGAGTTGTTCTAATGCAATGTTA 841913 36 100.0 34 .................................... CAAGGTGGCAACGTGCAGGCGTGCGGGCACGCAT 841843 36 100.0 34 .................................... ACATACAGAAGAGTAGAACATAGGTTAATTGATA 841773 36 100.0 33 .................................... CACTTCATGGCTGACACGTCATCTCGTGACAGG 841704 36 100.0 38 .................................... CACACGCTCTTGAGAGACGGCTTTCCAGAATTCTGATA 841630 36 100.0 33 .................................... TGATTGCCCGGCACCTGTTTGCATGGGATGAAA 841561 36 100.0 35 .................................... AGAAGTTCTATGATTGCTTTCTTTGCACTTGAGTC 841490 36 100.0 35 .................................... TATGCGCCGGGTTTCTCAATCGTGCAGGGGAATAG 841419 36 100.0 34 .................................... CAGTTCAGTGATTCTGTTTACTATGTCATCTGCT 841349 36 100.0 35 .................................... TGAATAAGTACATTAAACGTTTTGAAGGAGAAATA 841278 36 100.0 34 .................................... TTTCCAGTCTGCCCCAGGCCTCGTCGCGGTCTGC 841208 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 31 36 100.0 34 GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Left flank : TGAACAAACTCCCAAATTTCATCCATCTCACAATCCCCCGCGGAAATGTCATGAATAAAATAATCGTTGAGTTTTTCAGCATGTTCACCGATTAAGTGATAATATCGAGATATAGTGTCGCGATGGTGTCCGGTAACTCGAGATACTCCTCGAATTGAAGTTTTTTCAGTCGAGTGTTTCGCAATTATGAGAACAGCAGTTCGTGGTAAACGAGAATCATACAGAGGAGTATTTTTAGTTTCAATAAAAAAACGTCGACAGTGATGGCAATAGTACTGTTGATTGCCTGCAGAATTATGCCCATTTTTAGTAATATTCTTTCCATCTTCAATTTGAAAATAAGTACAATCCGGATTTTGACACGTAATCAATATAGGACCACGTTTTCCAACCATGAAAATAATTATATCTAAACTTATATTAATTTTTAGTACATAAAATTTAATACTTTATTTGCACTTAGTATTACCAGCTTGCTAACAGGGCACTACCGATTTTTA # Right flank : GTGAAAATTATATTTCAATATATTATGGTAATGTAGTTGCAAGTCACCTGAAGAAAATATGAGACTTACCTGTCGAATAGCATTGCCAAAAAATAACCCGACCTTGATAAAATTCCTGGAATATTATGCACTGATATGTTCATCTGTGAAATTTGCGGAGAAGAATTCGAAGACGAGGACGAATCCGACTGGCCTCAAATCTGTATCACCTGTCGTGAAGATGCCGAAACTGACGAACTCCTGGCACTCGATATCATTTAAGACTTAAAAAGCCAAGATGTATCCTGTGGTCTCTCAATGCGGAAATGTCTCAGTTTTGTCGGAACCGGAGAATTAAAACCAGCCAGATACACCCTTAACGGATCTCTATGCGATACTACCGTTATACAAAAGGCACTGGCAGAGTTCTACCATCCTGACATGATAACCCTCTTTGTCACCGGAAAAGCCAAAACAAATAATCTCTCCACCGTCATTACCAGCCTCTCAGAACATCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 844989-844463 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 844988 36 100.0 36 .................................... ATCATCACCAGTGATACAGGAGAACAGGCTGTCGTT 844916 36 100.0 34 .................................... CGAACGGCGGGTTCTGACGGGGGAGTGTTTTTCA 844846 36 100.0 34 .................................... TTTATCTTTCCTCCTGTATCGGTAGGCTTCTTTA 844776 36 100.0 35 .................................... TAAAAATGAATCATAAGGAATATAACGGTTGGTGG 844705 36 100.0 32 .................................... ATTTTTCGTCAATTATACTGTTCACCATTTAA 844637 36 100.0 35 .................................... TGTTTCAAGTTTTTTACTCGATGATATAATACAAA 844566 36 100.0 32 .................................... TTAGAGTATTTGGTGGATATGGTAGTATTGCA 844498 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 100.0 34 GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Left flank : ACGTGGAGAAGACAAAGGACCGGAACAAGGTGATAAAAGTCCTGGAATATTATGGACTGATCCGGGTGCAGTACAGTGTGTTCATGGGAAGCCTTACGGAAACGAGACTTCATCAGATGAATGCACGAATCAAACGGGAATTTACAAAGCCTAGTATTAAGATACTGGTGATTGAAGTCTGCAATGCCTGTATGGAGCGTGCTCTTCTCGTTCATGAAGAGTTACCCAAGGTGAACCGGCAGTTTGAGGTGATCTAAAAGAAGGGTTTTTCAGGGCCTGTTAGAGGGACTACCCAGTTCTTTATAAACTCAAGGCTCAAAATCGATCCGGGTAAAAAATATCCTAACGGAGGCCGGAATGGGCTTAGATCGAAACATAAAATTTATATATTATGCCTACTTCTTTAAATACTGAAGGCTCAAAATTGATCCGGGTAGGATCTTTGAAAATCGGGGGATGGAGAGATAGGTTTTGAGCCAATCTAAGCGAAAAAAGTGGCG # Right flank : TTACAACCTTCTTTTTCGTTTTTATGGGATTTTTAGGTACTGGCCTCCTTTAGAACTGAACATGGTAGTTTAAAAACTCACTCCAATTCCAAAGATGATCAGTAATACTTTCTAACATTGCTGGAGACTTGTGACTACTTTTTACTTCGATAAAATTATGCACAAATTGAAAGATATTTAGCGCTGAAATGAATCTATTGAGTTTTTTTGAAAAAGAGGCAGTTTTCCTTCCAAAACGGCTCAATCGTTGTCTGATTTTATTATTGTAGCCCTCAATGACTGAGGTAGAGATTGCTTTACTATCTGGATTTCCCATAATTTTCTCTCGAATGACATAAACAAGTTTATTCTTCTCTTTTACTTTGATCACCTGACCATAATCCAAGCATGGCTCACAATATAATTCAGGTAAACAAATGCTATATTGGACGTTTCCATCAGTAAAAATCGATATTTTGTTTTCTGGCGTTGGAAGTTCCATTCGGTTAAAAAATCGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 855463-852826 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 855462 36 100.0 33 .................................... ACGCCCGCGCCCGCTTGTACGAGCTCAATCGGG 855393 36 100.0 35 .................................... GATATTTACCATATAGTTATTCTAGTATCTGATTT 855322 36 100.0 34 .................................... CTTAGCGTTTAATAAGGTTAACTTGTCATACGCA 855252 36 100.0 33 .................................... ATGCTTTGAGGATAATCAGAAGCCCTCTAGAAT 855183 36 100.0 34 .................................... TTAATACAATAGAATTTTTATTTCATCTTTAATA 855113 36 100.0 35 .................................... TCTTATACTGCGCCTCAATTTCGGCGCGCTTTAAA 855042 36 100.0 36 .................................... GGGGCATCATCTAACCACGCTCCTTTGTGGTATTTC 854970 36 100.0 34 .................................... AAGTCCTTAGCGGCTTCAATCTCGTCAAGTGTAA 854900 36 100.0 36 .................................... ACGGATATAGTTACGTCATGTTTACGCAGTCTTACG 854828 36 100.0 34 .................................... GTTATCAGGTTACAGGATAGGACCGCGTGTGGCT 854758 36 100.0 35 .................................... CTGATTTCATCTGTTTTTTACTTTAGTGTGATATA 854687 36 100.0 35 .................................... TTGGAAGCCCCTTTCCAACCTAAAAGCAGAATGTA 854616 36 100.0 37 .................................... AACCTCATGCAGGGCCTTGCAGCACCAACGGAGGCAG 854543 36 100.0 35 .................................... TACATCAGGGAGATCTATAACACCTGCAGCAACCT 854472 36 100.0 34 .................................... TTTCCCTCTGTTCTTCCATCAGGTTGTGCACCTG 854402 36 100.0 34 .................................... TTTACAATTTTTTTATACTTCTCATTAGACTCTT 854332 36 100.0 36 .................................... TCATCCTCATTCATCTCACTTATAAGAGAGTGAGAT 854260 36 100.0 34 .................................... ACATACTGGGGCTGGATCATTATTCTGCCAGTTC 854190 36 100.0 34 .................................... CAGAATCAAAGATCTCATTATGGGTTATTTTGAG 854120 36 100.0 33 .................................... CATGAAAGGCGGGAACATAACATGATCCATTAT 854051 36 100.0 34 .................................... CAGAATCAAAGATCTCATTATGGGTTATTTTGAG 853981 36 100.0 33 .................................... CATGAAAGGCGGGAACATAACATGATCCATTAT 853912 36 100.0 34 .................................... CGGGACAGACGGCAAATGGAAACGCGAGTACACA 853842 36 100.0 33 .................................... TTTACCGCACAAATCGCAGAACGTATCATTAAC 853773 36 100.0 34 .................................... TCCTGATACCACCAGTTGCCCTGTGCAGCACCTG 853703 36 100.0 33 .................................... TTATCCAGAAATCGGATAAGCTCCATGAGTTCA 853634 36 100.0 35 .................................... CAGGAAATCATTCCACTATTTTGTCAAGCATGTTA 853563 36 100.0 35 .................................... GACGTTGTTTCTATTTCATTTCTCGAACATTCCCT 853492 36 100.0 34 .................................... ATAATAGACCTCATGTAATGTGGCTCTATCTAAT 853422 36 100.0 34 .................................... TCTGTATCCGTACCATAATCACTCATCCTTACGT 853352 36 100.0 33 .................................... TATAATCGGTCCATAATGTGCCATACCTACCCT 853283 36 100.0 35 .................................... CACTGACCTTTGTAAGTTACAAGTCACCCTAAAAT 853212 36 100.0 35 .................................... TACATCTATGTAAATGTTTAATGTGGGGTTTTCTT 853141 36 97.2 34 ..............T..................... TTACACTCGATATATCACCATAATGATCTACATA 853071 36 100.0 34 .................................... TGGTATACAGATGTATGAGGTTAATATTGGGTAG 853001 36 97.2 34 ..........T......................... CCACCATACCCGTTATTGGGTTGAACAAGTACCA 852931 36 100.0 34 .................................... TAACTCATAAGATCGTTCGCGCAGTCATTACGAT 852861 36 80.6 0 ........A.........T......TA...TC..C. | ========== ====== ====== ====== ==================================== ===================================== ================== 38 36 99.3 34 GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Left flank : GCGATCAGCGCTCATGATGTATATGGTCTTTGATAATATGACTCAAAATGAAATGGAGCATATTACTCAGTTTTTTGATAAGGAAATTCAGATCACCGGGAATACGAGTGCCGGGATTTCGAAATATAATCAGGGGAGTCCGAAAAACAGGGTTAAAATTCGGGTAGAATCGGTGAACCGGTTTTCAGCAAAAAAGTTCCTTGCAGAATAAGTATCCCCTTTTTTCAGGAGATATGAGTTATCTATTATCATAAAAAAAGGAGAAAAAATTGGGCCCTTTTAGAGGGGTTGCCCAGTTCTTTATAAACTAAAGGTTCGAGATCGATCCGGGTAAAAATATTCTGAACGAAGGCCGATTTGGGCGTAAATTGAACCATTACATTTATATATTATGCCTACTTCTTTAAATACTGAAAGCTCAAAATCGATCCAGGTAGGTTCCCTGAAAATCGGGGGATGGAAAGATGGGTTTTGAGCCAATCTAAGCGAAAAAAGTGGCG # Right flank : ATTTTAATGAAATCTGAATAAAACCCTGTTCTATTAAATTAAAAAAAATATTACATTGCATACCACCCAGATTAAACGTTAATCCAATACACCGGTGAAATCCAATGACAAAATTAAAAGACTGGTTTTACAATAACAACTCCTGGTCACACACGAAATATGAGCTCTGGCATCGCTGCAAAAGAAAATTCTGGTATCAGAATATTGCCCCGTACCTTCTCGATCCTGGTAATCTGGATGTTGGAAAAATAAGTATGCTCAAATCTCTCACTCCTAAATATGCTCTCCAGGGCAGGATTATCCATGAGATTCTTGAAGACCAGATGAACAAACACAATCTAGGAAGAGAACCAGATCAGGAAGCTATGATATCTCAGTATCTGAAAAAGGTTCAGATGTACGAGAATACCTCACGAACAACCATTGCGGAATTCTACAACGGAGCACCAGATGAGACCTTCTTTGACCAGATCAGGGAGACCGGTGTCACTCAAATACAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGTGACCCGAAAATAGAAGGGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1566645-1566433 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1566644 29 96.6 32 ...........................T. AATAGGTTGTCGCCTTTCTTCCGGCAGGTAAA 1566583 29 100.0 32 ............................. TGAGAAAAGAGAGTGTGGGGCTGCTATGTGGC 1566522 29 93.1 32 ..............G....A......... AACCCCATCTGACATATACTGGTTATACATAT 1566461 29 75.9 0 .......TG.....C.AC........TG. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GAGTTCCCCGTGTGTATGGGGATGAACCG # Left flank : AGAACTCCAGTTCTCTTCCGGTTTTATCGCAGACGTCGATGGTGATGGACGACTGGTCGGGAAAGTAAAACCTGACCACATCCTTATTTTCAAGAAATCAAAGGACGGGCTTCAACCGCAGGACGGGGGGGCCACGTTCCTGAACGCACGGAGTCAGACTATGGATTCTGAAGAACTAAAAGGGCATTTTACCCGACTAATGGAGGCTATCAAAGGGCTGACTCCGGCTAACGGACCGGCCCCTATCCTCAATGCGAGCAATTCGAACATGACAGAAGAACTCAACAAACAGGTCACTCTTCTGAACGCTCAGGTCGAAACCCTGACCGGTCAGATTGCTGAAAAGGATACCGCCATCGCAGAATTAAACACAAAAGTTCAGGCATTCGAAGACGAGAAGAAACAGGCGGAAGCACAAGCACAGGAAGACGCCTGGCAGAACATCAAGACAAACGTTCTGCCTCCCGGACTGACTGCAACCCCGGAACTTGAGAAGGAGC # Right flank : GAACCGTCTACAAGTATGCGTGTTCCAGATAGTTTCAATAGAACACTTGAATAAGTAAATGATAAGCAAATAAAAAGTTCGGGCATACATCCGACTTTCACAAAAGGAAAAACAAAATCAGATAATAAATGCTTTTCAAAAGTAATCAGGATGTGTATGCGGTTAATATCCACATCACCGCATACACGAAAGTGGGTGAAACCCGAGCACGTCAGATCCCCTTAGTCTCTTCCGGGCTTCCGGATTTGACAATTTATCTACAGGGTTTCTTAACAAATAATTGTTGCCCGTGTTTGGGATAATCCACGATCTCAGCCGGGTGGGGATAGTATGAAACCTGAGTAAAAAGGATCCCTGAAAAGGGAATTAAGAAGATTGTGTCTGGATATCGTGGTTCACCTGGTGGCCATGTATCTTTACTACCATCTTTTTTTTATTCCCTTCGTTCTCTATTCAAATACGAAAATTCTCCTATTTTGTTTTATATTAACGCTTAAGTG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGTGTGTATGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1573396-1568546 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1573395 29 100.0 32 ............................. ATCCGGATAACTGCATCATCCACAAACGTGTA 1573334 29 100.0 32 ............................. ACACCACGATTACCCTTCTTGAGATGTCCCTG 1573273 29 100.0 32 ............................. ACATGCCGAAACGTGTGAATGGGTTGATGCGG 1573212 29 100.0 32 ............................. GAATGCCGGTCGGTCAGAAGATCACGAACCTG 1573151 29 100.0 32 ............................. CACACCAACCCTGATGAAAGAAATGGCAGTAA 1573090 29 100.0 32 ............................. TACCAGCACTTCCGGATGGTTGGTTCTGTGTT 1573029 29 100.0 32 ............................. TGCTTATGGTGATGATGATGAGTGATCACTAC 1572968 29 100.0 32 ............................. AATGTGCGAGCAGATCACACGATTGTAGCCAC 1572907 29 100.0 32 ............................. GAAAGGTAGTGAATGATTATCATCGGGTTGCA 1572846 29 100.0 32 ............................. CTTCGGCAAAGGCCCGGACGTCTTCCACTAAT 1572785 29 100.0 32 ............................. CAATCCAATGCTCTTTGTTCGATACATCTCCT 1572724 29 100.0 32 ............................. TTACGTGCTCCAATGTCGAATATAGGGTTGAT 1572663 29 100.0 32 ............................. CCTAATGGACAGCCAATGAACACAACTCCTGC 1572602 29 96.6 32 ............................A TGTAATAAAAACAGTCCCACAGGACATAATCG 1572541 29 100.0 32 ............................. CAAACGCAGCAAAACAGAGAGCCGAAGAATTC 1572480 29 100.0 32 ............................. CCCCTATAAACAGAGTAGCACCCATTCTCCAA 1572419 29 100.0 32 ............................. TATCCGACAATAGCACCAAGTTCACCAACCAA 1572358 29 100.0 32 ............................. TTTATGTATTCAATTCAACACGGGATGCACCC 1572297 29 100.0 32 ............................. TAATATCTGAAATAGTAATCGCCGCGAATAAA 1572236 29 100.0 32 ............................. CCCTTCGCGCTTCCGTTCTGCCGTGCGCTTAT 1572175 29 100.0 32 ............................. TTAAATGCACCAATCGTCTTTACGGTAAATGA 1572114 29 100.0 32 ............................. TAACCCATCCTCTGATAGTTCAATATCAAAAC 1572053 29 100.0 32 ............................. ATTATGAAGCGAATGGAACTTGGGATAACGGC 1571992 29 100.0 32 ............................. ATAACCGGAGTAGAACACTTAAAGAAATTTGA 1571931 29 100.0 32 ............................. AGAGATAAACAACAGGAGATTTTAATCCAACC 1571870 29 100.0 32 ............................. AAATGAGTTCAAAATACTGTGCTGGTGCAATT 1571809 29 100.0 32 ............................. CAATGAATCTTGACATTGTTTGTTCAGCTTAT 1571748 29 100.0 32 ............................. AGTTCTATGGTTTCTCACTGGAGCGGATCAAA 1571687 29 100.0 32 ............................. AGTTCTATGGTTTCTCACTGGAGCGGATCAAA 1571626 29 100.0 32 ............................. TAGAAGCAATATTAAAACAGTTGGAGTTATTA 1571565 29 100.0 32 ............................. TAGAAGCAATATTAAAACAGTTGGAGTTATTA 1571504 29 100.0 32 ............................. AGGCAATATATGACAGATACATCTGATGGAAT 1571443 29 100.0 32 ............................. ATGCACGCTGGATGCATCAGGGAACGCAACAT 1571382 29 100.0 32 ............................. CGTATATCTTTATATAGTCTGCAGGAGACTTG 1571321 29 100.0 32 ............................. GATTACCTGATGTTTGGTTGTGATAGAGGGAT 1571260 29 96.6 32 ............................A TAAAAATCGGGTAAATAATACAAATTTGAATC 1571199 29 96.6 32 ............................A TGGGAAGATCGGCTCTGGAACATAGGGCAGGC 1571138 29 100.0 32 ............................. TGTGCAACCTGTGATATTGCCTGCGAATGCGG 1571077 29 100.0 32 ............................. TACGTAGACGTGCTTATCGCTCCTTTTGCATA 1571016 29 100.0 32 ............................. AATCCTGATAGAACCATCAGAAAACCCAAGGA 1570955 29 100.0 32 ............................. GACTCTGCAATGAGTAGGCAGGGAAAGGCGGA 1570894 29 96.6 32 ............................A GGGGTAGAGGTATTAGGCCCATGAGACAAATA 1570833 29 100.0 32 ............................. CAGGCGATTGAAGCACTTGGAGGCACTCCTGA 1570772 29 100.0 32 ............................. TCAGAAAAAGAATTCAAATCAAACTGCCTGGA 1570711 29 100.0 32 ............................. AAGAACTGGAAGAGGGAAGGCCGCATGAGGAT 1570650 29 100.0 32 ............................. TCACCTCCTAACGTGATGTTATTGCCGTTTCC 1570589 29 100.0 32 ............................. GATAATTTTCCCGTCAAGCCCGCTTATTTCAC 1570528 29 100.0 32 ............................. ACCAGTGCAAGGCAGTCCGCGAAATGATGTAT 1570467 29 100.0 32 ............................. AGTACCTACGCAGAGTATGGGGGGGGTGGGGC 1570406 29 100.0 32 ............................. TTGCAACACTCAATACTGTATGTCATACCTGT 1570345 29 100.0 32 ............................. GCTCAAGAGACTGTATTAGAACAGACTCTTGA 1570284 29 100.0 33 ............................. GAGAGAGTATTCAAATGTTCACCAAATGTGTAC 1570222 29 100.0 32 ............................. TAGACCTGGAATTCTATGAGGAAATCCTGAAA 1570161 29 100.0 33 ............................. GTGTATGATTTGATCAGTGAATGGTTAGATGAA 1570099 29 100.0 32 ............................. GCACTGGTAGTATGAGCCGTGACAGATATCAT 1570038 29 100.0 32 ............................. GGATAGAATACCGATAAGGGCGCCATTAAAAC 1569977 29 100.0 32 ............................. GACAAATCCTTATGTGGACTTCAGACGGTCTT 1569916 29 100.0 32 ............................. GGCACGTAAAACAATTATATCAGAGGATATTG 1569855 29 100.0 32 ............................. AACAAAGAAAAATACAAATCTATTGATATAAT 1569794 29 100.0 32 ............................. AAACAGGCAAAACTGAAATTGGCGACGGTTGG 1569733 29 100.0 32 ............................. GTGATGGTTCCCCTCATGGCCCGGAAGTACCC 1569672 29 100.0 32 ............................. AAATTCCGAGTCAATCAGAAGGAAGATAACAC 1569611 29 100.0 32 ............................. AACTCGAATCCATGCTTGATGCGAAAGAATTG 1569550 29 100.0 32 ............................. TGAAACTCGTGGAGTGTTGACTATCAGCGGTA 1569489 29 100.0 32 ............................. GAACGAAATTAGATGAGGGCATTCTTTCGGGA 1569428 29 100.0 32 ............................. GATGCGACCATCTTATCTGACATCGGACTTGA 1569367 29 100.0 32 ............................. CGCCAAGAATTGAGGGATAGAACGCGATATAC 1569306 29 100.0 32 ............................. GAATCGGCAGAATCATAATCTCAACCAGTTTC 1569245 29 100.0 32 ............................. TATGTCATTAATCAGGTTCATAACCTGATGCC 1569184 29 100.0 32 ............................. TTGTCTCTATGAAGCAGGAAGCCCCATCCTCA 1569123 29 100.0 32 ............................. TGTGTAATATCGATGAGAGTGGGGAGCAAGTT 1569062 29 100.0 32 ............................. AAGCATCACACATTTTCCCGCATGAATCCAAA 1569001 29 100.0 32 ............................. CATATCTTGCATTCAGAGAAACACTTCATGAC 1568940 29 100.0 32 ............................. ATGACCGAAGAAGAGAAGGTCATCATTTCGAT 1568879 29 100.0 32 ............................. AGCGCTTAAAACTTAACTAATTTTTGTTTTAG 1568818 29 100.0 32 ............................. TCAAAACGGGGAACGTAAGGTGCTGCAAACAC 1568757 29 100.0 32 ............................. CATGATGTGTTGGAGGATTAGATTTTTTTTAT 1568696 29 100.0 32 ............................. TCTACTTCCTTCGTTTGTTTCAATCCCATTTC 1568635 29 100.0 32 ............................. CGATCGCGAAACGCCAATCCTTCTGACATCCA 1568574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.8 32 GAGTTCCCCGTGTGTATGGGGATGAACCG # Left flank : GATTTATTCCGGGAAACACAACTCCTCAAGAGGATTATTCCAACGATTGAGGAGGTGCTGACAGCTGGTGGCATTTCTGCGCCTGCTCCTCCTGACTGGGTTGTTCCACCGGCGATTCCTGTTGATGAGGAGGGATGAGCCGGCATGATTGTTGTGGTAACAGAAGGAGTCCCGCCGTCATTACGAGGGAGGCTTGCAGTTTGGCTCTTGGAGGTCCGTTCTGGAGTGTATGTGGGTTCATATTCTGTGCGAGTCAGAGATATGATCTGGAGTCAGGTATGTTCGGGTATTGGAAAAGGAAATGCCGTGATGATGTGGCACACACCGACAGAAGCAGGGTTTAAATTTGAGACCGTGGGTCATAACCGCCGGATTCCGATTGATGCTGATGGCCATCCATTAGTAGCATTTATGCCGGAGGAAAATAAGAAAAAGTAATGTTCACCTGATATGGGCATCCGGAGGAAGGGCGTTTCCTCCAAGAGGAGAAAAAGGGAAGA # Right flank : TGTACTTGCATATTGCGAACATAGATTCCTCCTTTAATAAACCCGATTCTATCACGACAGAGCGCAACAATCATTTCTTTGGTCTTGGAATAGAAAAAGCAAAAGATATCATAAAAGATGGAGCATATCACGAACCAGCATACAGATCCTCGTCATTAGATTTGAGTACTGCTTATGGGTTTGCAGCGAAAGAACGTGATGAGAGCGGATTCTGTAATGTATTCATGTTTCAAACCCCTCCTGGAACAAAGGCCTTATCACTTGGAGATGGAGAATATGAGTACTTAATGCCACGGGGAGAAGAGTATGTGGTTGGAGATATCTTTAATGCAGATAGATTCGAATATAAGCACACTGACTACGGGGTTGAGCGAGTGACCCCATTAGAAAAAGTTCGTATGATACTTCTAAAAAGAGTAATAAGATGACCCAAGAAGAGACATTCAAACGGTGGAAAGAGTGTGATGATGGAATTATCACTGGAATAAAAGATACTCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGTGTGTATGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 6 2092024-2088864 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2092023 36 83.8 34 ..A..-TCCT........................... TCTCTTGAAGGTGCGGGAACTCCGATGGATTCCG 2091953 37 100.0 36 ..................................... TACGCCGGCACATTACCCGGCATTACAACTCGTACA 2091880 37 100.0 37 ..................................... GGGCTTGAATCTCTCTCATCGTCAAACCGGGTGACCT 2091806 37 100.0 36 ..................................... TAATATTTACCACTTGGATTAATGTCTAATATATTA 2091733 37 100.0 35 ..................................... TATGACCGGGTGGTATGCCTGAAGACCGGAGACAA 2091661 37 100.0 36 ..................................... TTTGAGAGACTGGTAATGACGGCTGATTATAGTCTG 2091588 37 100.0 35 ..................................... CGCATATCTTGATTTCAAGGCAGGATACGATGTGA 2091516 37 100.0 35 ..................................... TCAGCAACAGCAGCAGAAGCGGTTACGACTGGTGT 2091444 37 100.0 36 ..................................... ACAGATATGTGTAACGTGGGCGGCAGGAAAATGTGT 2091371 37 100.0 36 ..................................... CTTCGTAACTGAGCATTGCACATACTCCCCTGATCA 2091298 37 100.0 36 ..................................... ATTGTTATGTTTGGACTGGTACTGAATGGGTAAATG 2091225 37 100.0 37 ..................................... CAAAGTGTGCCAAAAGTTTGTCTAGCTTGGTATTCAG 2091151 37 100.0 35 ..................................... TCCTCTCCGGGACGCTTTCGATGTCGGGGAACCGG 2091079 37 100.0 37 ..................................... TTTTCAGAGTCGCTGAACATTGAAGGGTCTGACCCGT 2091005 37 100.0 36 ..................................... GGTGGTATGTGCAGTTCGATACACAGACCCAAATGG 2090932 37 100.0 35 ..................................... CAGTTCAGCCACAATGTTGCTCATGAGATCTACGT 2090860 37 100.0 35 ..................................... TGAGTAACCCCGCTTCGTATGCCGGTGTTGCTACT 2090788 37 100.0 34 ..................................... TTCTGCAGACGCCGCGGTTCTAACACCGGAATAT 2090717 37 100.0 37 ..................................... TCTGGCGCCCGCAAGGAGTTTGAGCGAAAGGCAGCAA 2090643 37 100.0 37 ..................................... TCATCCCAGAACGTTATGAGATTTGCGCCTTCCGTTC 2090569 37 100.0 35 ..................................... TTATATGAGCGAAGACCTTAAAGCCCTGAAAGAAT 2090497 37 100.0 35 ..................................... ACATAAATCCACCATTGCTCACATTCCCAATATAA 2090425 37 100.0 34 ..................................... AAGTTTTAGCCATTCAACCAGGCCCTTATGCCTG 2090354 37 100.0 36 ..................................... CATAACTGTACCATAAAGCCCGCTCGCAAGGATTAC 2090281 37 100.0 36 ..................................... TCAGACAGCAATTACGACAGACCCCCAGAAATACTC 2090208 37 100.0 36 ..................................... TGAGTTCCACTGGTCCGCTCATCACATGCCTGCCCA 2090135 37 100.0 36 ..................................... AATGATGCGAGTATGTCAGTGAAAAACTTGGTAATT 2090062 37 100.0 36 ..................................... TTTCACCGCCGGAGCAACGATAAAGGCCGGTCAGGT 2089989 37 100.0 37 ..................................... CCGGGTCCGGATCCCATGAGCCCCCAGAGCCCCTCGA 2089915 37 100.0 35 ..................................... TCTGCTGTGTGCTCACTCCCGGATCCCGCTCTCCG 2089843 37 100.0 35 ..................................... GTCCATGGAAGCGGTTTCAGCGCATAAAGGTAAAA 2089771 37 100.0 35 ..................................... ATTTATAACTCAACAGATGATTTGTGATATACCGG 2089699 37 100.0 36 ..................................... CATAATCTGACAAGCGGAGGCAGAGTTGCAGATGTT 2089626 37 100.0 35 ..................................... TTGCCCGGCTCTTCGAAGTCGTGAGGATTCATAGT 2089554 37 100.0 37 ..................................... ACATGATCCTTTTTGACTGATGTGACCATGTACACTC 2089480 37 100.0 35 ..................................... GTATACTTCCCCCAATGATGCAGGCCAAGACCCAA 2089408 37 100.0 36 ..................................... TTAGTATGTGATGCAGCATTAAAGGAAATTAACAAG 2089335 37 100.0 35 ..................................... CCGGAGTGATACCATGAAAATTGATGTGGAAACTC 2089263 37 100.0 35 ..................................... AATAATGCTCCAACACCTAAGGGAACTTCAGTGAT 2089191 37 100.0 35 ..................................... CCAGAACGAGGTTGTATCCCTGTGAATAGATTTTT 2089119 37 100.0 35 ..................................... TGCGTTTTCTTATAATCTTCATATAATCGCAACAA 2089047 37 100.0 36 ..................................... CTAGATGGTTCAAATACAAACAACAGGAACAAAAAG 2088974 37 100.0 37 ..................................... CTTATATATATGATCCAAGGGTGTTTCAATTCATCAA 2088900 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 44 37 99.6 36 GTCACAATGGAAAAGAAAACCCGATAGGGATTGAAAC # Left flank : GAAGGCTGTATTGACCATATCCTGGAGATGATCATTTTTGGTTTTGTCATCAACTTTTTTATCATAAATTCGATAATCAATTGGAAATGAGACGATTCCATCGGTCCAAATCAGTGTTATTAGTCCGATTCCTTTAACGACCTTGTGATGCTTGCCACTCCATTGATAATAAGTGCCCTCAATTTTTTTTGAATGAATTTTATCGAGAATTGTATCATCAACAACCAACCAGCCGCTTTTTCGTTCAACATAAGGCTCAACTTCTTTCCACAACGCCTCAGGAGTTAGAGACTGTCTTGATAGAAATCGGTTGTAAGTATCATGTGATATCGAAAAATCAGCCGTTGAATAACAATCTGCAACTTTTACACAAGAAACGTCACATCGAGCTGCGATGAGGTAATTGATATAATCAACATCGGATGGCTGTTTCGTTACTGGCACGTATATTATTGGTGCTGTCAACATATATAGATCTTTCTATTATAAAAGTTAACTGC # Right flank : CCCTTCTACGTAAATCTGGTTTGCCGTACTGCCTGATAGCCTTTCAATGTCCCATATCGGGAAGATATGCCCGAATTCCCTGTTCTGTACTTACAGAAGGAAGGAATAATCATTCTCCAGGTTATTGCTGAGTGTTTCTTTCAGATATTCGCTCTCTTTTCAGTTGATTTCTCCAAGAGATACATCATCTGCTAGATCTTTTGTCTAAAGAGAGATACATCTGTGGGTTTGTGGATGGTAATACATATGCTTATGAAAGAGTAATACTGATAACAAAGTTCAGGGGATAATACGGTGAAAAAATTCCGGATAGGGACCGACGATTTCAAAGAGTTTATTGAAGATGGGGGATACTTTGTAGATAAATCTCTCCTGATACGCGATATTATTGAAGGAAACAAAGTCACGCTCATCCCCCGCCCCCGTCGGTTTGGTAAAACCCTGAACATGACAATGCTCCGGTATTTCTTTGAACGATCAGAAGAGAGCCGGTCTTATCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATGGAAAAGAAAACCCGATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 7 2097915-2093152 **** Predicted by CRISPRDetect 2.4 *** >NC_007796.1 Methanospirillum hungatei JF-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2097914 37 100.0 36 ..................................... AGGGATGTTTCGATCAACGGTTCGGAGGTTGGCCTC 2097841 37 100.0 35 ..................................... ATTCGAAAAAGCCCTTGAGGACGTCGAACGGAACT 2097769 37 100.0 35 ..................................... CAATGTTGCTGTTTACCATGATGATCTCCAATTCT 2097697 37 100.0 36 ..................................... TTTTTCTGCACCGTCGAAAGTCCGTCAGTAACTGCC 2097624 37 100.0 35 ..................................... AGAACGCATGAACTACGAAGATCCGACAACTACAG 2097552 37 100.0 36 ..................................... ACCATCAACAATCTGATTATTCCAGGTAATGATCGC 2097479 37 100.0 37 ..................................... TTTCTGAATCTCCTCCTGAATCATCTCCCTCATCGTC 2097405 37 100.0 35 ..................................... TGATCCGACTGACCCATTCCGGTTGATGATGCCAT 2097333 37 100.0 37 ..................................... ACCTCGTTGATAAGAATGGAACTCCCTGTGATACCTG 2097259 37 100.0 34 ..................................... CCAAATACCGGACTCTCACCATCAACGAGGTCAG 2097188 37 100.0 35 ..................................... TGTTATTGTAATCCCCCCTTTAGAAAATTGCCTCA 2097116 37 100.0 36 ..................................... ACGGGTTCGCTATTCAGTGTAGAGACAAGCATTACA 2097043 37 100.0 35 ..................................... TGACGTACCGTCGAGAGTGGAAAAGTCAAAACTGC 2096971 37 100.0 36 ..................................... GTGGATCAAATCCCACCAAAATCCTGGTAAAAAATT 2096898 37 100.0 34 ..................................... CTGTTCAGGACTACTCGTTATGAGCTCAAGCTGG 2096827 37 100.0 36 ..................................... TAATATTATCTTATTTTGGTGCGCGTGGGTAATTAT 2096754 37 100.0 34 ..................................... CCATTAGGCAATTCTCTATCTCTTTCATATTCGG 2096683 37 100.0 35 ..................................... CCTTCTGGTGAAGATTTTTCTAATCCTTTTATCAC 2096611 37 100.0 36 ..................................... AATGGCTTACACTCTTTTTCAATCATTCATCACTCC 2096538 37 100.0 35 ..................................... CCCGGTGCCGGTTTATGGCTCCTAAACTAACTCCA 2096466 37 100.0 35 ..................................... TATTTTGGGGGTGTGCTGATGACTGAAGCGGTATC 2096394 37 100.0 35 ..................................... AAATCAATCATCTCATTGAATCAGGTGTTTTTGAA 2096322 37 100.0 36 ..................................... TATGACGATGAATTTTCAGGAGTTCCCACAACTCCA 2096249 37 100.0 36 ..................................... ATTAGTGTGAGATCATGAAGGATTGCATAGTCCCTT 2096176 37 100.0 36 ..................................... CCGATCAACCAGGAGGCAATAGATGCACTCATTGAG 2096103 37 100.0 35 ..................................... TAATATAACCATAGGAACACACAGGGACGAGTGAG 2096031 37 100.0 38 ..................................... TTGAGTCCTGCCCCATCTCAATAGCGGCCTTTACTCGT 2095956 37 100.0 36 ..................................... TCAACTATCCGCGGATGGTAATCCGACATTTGGCAC 2095883 37 100.0 37 ..................................... TTCGTTGCATTGACTGCGAGAGCGGTGTCATTTGTGA 2095809 37 100.0 37 ..................................... GCTGACCAGGCGTTCTATGAGATCTCTGGGCAGTCTC 2095735 37 100.0 35 ..................................... AAATCTATATCAGAGTTTGGTTGGATAGATCCTAT 2095663 37 100.0 36 ..................................... CCTATATTCCAACATTTCATATTCTTTGATATCCTG 2095590 37 100.0 35 ..................................... TCTGTCATTACATGCCTCCTGCTATTTTTACGCGG 2095518 37 100.0 34 ..................................... TCACTCATGAAAGTCTTCTTTTTCATTGAGTCGA 2095447 37 100.0 35 ..................................... TCACATACGGCTGAAGAATACCCAGTTGAGAAATG 2095375 37 100.0 36 ..................................... ATTGGTTACGAGGAAGTCCAGACAGGAGATTACAAA 2095302 37 100.0 36 ..................................... ATTGCAAGAAAGAAAATGGTAGCCGCAAGGGCACGG 2095229 37 100.0 36 ..................................... ATTCACATCATCTGGTTAAGAAGTTGATTCTTGATG 2095156 37 100.0 34 ..................................... GAATATGTCTGGGACGGCCAGGGGTATGTCTACC 2095085 37 100.0 36 ..................................... AGTCCGTCGCCCCGTGGGTTCGTGCCGAATGTCGCG 2095012 37 100.0 37 ..................................... TATGTGTGTGTAATTATATTACGCGTATATGCAAAAG 2094938 37 100.0 38 ..................................... TATGGTTTGAACTCCTCAGCGAAGTCTATCTCAAAAAG 2094863 37 100.0 36 ..................................... AATCCTAACCCGTGTATTTTTGCCCCGTATTTATGT 2094790 37 100.0 36 ..................................... CAATGTAGGACTAGACTGTATGCAGTACTCTCCTGG 2094717 37 100.0 36 ..................................... ACGTATAGCCCTCACAGGAGGTATGCTAAACCAGAG 2094644 37 100.0 34 ..................................... GATTTCGCTTTGATGAAATCTATGATATCCGGAT 2094573 37 100.0 37 ..................................... TAGGCGGGTGGTCGAATGAACTTTGCTGGCCGCTGCG 2094499 37 100.0 36 ..................................... ATTGCATCAACAGACTCACCGATCCATTCAGCGAGT 2094426 37 100.0 35 ..................................... ATTGGATAGATGGTCATACCAGTGAGATGTTACAT 2094354 37 100.0 35 ..................................... TATCGGATAGCAGACAACCGGCGGGACATGACCCG 2094282 37 100.0 36 ..................................... AAATACCCGGATGACATAACGAAAACATCACCATAG 2094209 37 100.0 37 ..................................... GACGTGCGAATCATTTATAGAGAGATATAATGGCAGG 2094135 37 100.0 36 ..................................... ATGGCTACTGAGTTTTCAGTCAACCGATCCATGAGG 2094062 37 100.0 36 ..................................... ATGGAAACTGCACTTGAAAAGGCCCGTAGAATCAGG 2093989 37 100.0 37 ..................................... TAATGCCTTACGCATATCATCGGCTGTGATTGATGTG 2093915 37 100.0 36 ..................................... ACAGTCAGCCGGAAGAACCGCGGGAAGAAGTCGATG 2093842 37 100.0 35 ..................................... TCAGGAAGGCGTCAGAAGTCAGACCACGGCTCACG 2093770 37 100.0 37 ..................................... ATAGTGTCATCTGATGAGCTGATGAGGGAGAGGGAGC 2093696 37 100.0 36 ..................................... TGCTCTCATGATACTCAAACGGGGCTGGAAACTCAG 2093623 37 100.0 34 ..................................... TCCTGCAGGGAATGCTATAAAACGCGGCGATGAA 2093552 37 100.0 36 ..................................... CCATCATCATCTCAATGACATCCTCAGCGCAGGAAA 2093479 37 100.0 34 ..................................... CCATTGGATCATAATGACTGCGGCCATACGGTTT 2093408 37 100.0 36 ..................................... GACATTATGGATACTCCCCCCCTTACAGGTAGGAAG 2093335 37 100.0 37 ..................................... TAATCTCAAAATCTGCCCGATAAACCCCAGTTTCCCG 2093261 37 100.0 36 ..................................... AATCCTACTTGCTTACTGTTTGCCGTGTTAAGGTTA 2093188 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 66 37 100.0 36 GTCACAATGGAAAAGAAAACCCGATAGGGATTGAAAC # Left flank : TAAGTATTCTGTCTCAAGAAAGAAGGCTATTCAAATTCAGGCAATTATTTTCCGAAAAGCAATTTGTGGTGAGCTGAAAGGGTATTACCCGTTTATTTATGCCAGGTGATTGCATGGTTCGGTTGGTTATTACCTATGATATCAGGAAGGATAAGATTAGAAATAAGTTATTTCGCCTTTTAGAGAGGTATGGAGCATGGAAACAGTATAGTGTGTTTGAGCTTGAGATAAATCCGGTCCACAAGGTTGAGCTTTTTCATAGTATTGCCGATCTTATTGAAGATACTGACAGAGTCAGGATATATGATTTATGTGAACGATGTCAGGGAAAGATTACAGAGTTAGGAGAAGTATCTCCTGATAAAATGCAGGTTGTAATATAATCTGTTTCTTTTCATGACAGGATATAAGGTGATGGGATGATAATGATCCATGATCATCTCTTGTTTTTTCCAGAACGATAATCAATTATAAGATAAAAACAGACAAATATTGTGGCG # Right flank : AGGAGCAATCCCAGTATCCCTCCAATGATTACAGGAAGTCACAATGGAAAAGATAGGAGTTACGCAGAAGAGCCTCCAAAAATTTTATAGCGCATATTTTGGTCTCTGAAGGTACTCTGAAATCCCTACTTTTGTGATTTGCCATTGAGCATTATATGGGGTGACACCATTCAACAAATGGTTTATCTCAAGTCGTAAATATGCCCTTAGAGAGCAGTTAATATGATTCCTTTGAATAATTGCTTTCCTAGCCTGACATTTTTCGACGCCGCAAAGTTCCTTAATTGCCCGATGATAATTCTCGATTGTCCAGCAAATTGACTGCAAATTGAGTCTATCTTCATTATTCATCGGAATAAAATTAGAGAACCAATATCTACTTTCACCTTTTCTGTTTACCGAGTGAAAAAGACGAATAAATCCAAATTTTTTCAAATGTACTTCCAATCCTTCTTCAGGAATTTTCAAATCGGAAACTTGGACATTACCTTGGCCGTCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATGGAAAAGAAAACCCGATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //