Array 1 19759-20452 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLH01000021.1 Haloferax lucentense DSM 14919 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19759 30 100.0 35 .............................. CTGATATCCGACAATCCCCGTCCCAGTTGCGAAGA 19824 30 100.0 35 .............................. CCAAGACTTCGGGGTGAGTCTCGGTGTTGGGGATC 19889 30 100.0 37 .............................. TTCCAGAAAGCGTTGCAGGAAGCCCAAGCCGACCCGT 19956 30 100.0 36 .............................. GCGACCAACTGGAACGTGTCGCCGTCGACGACCGTC 20022 30 100.0 37 .............................. TTCGAGACTGGACGATGGACCCACTCGTCTCGGAACC 20089 30 100.0 37 .............................. CCCTCCAGGAGCGCGCGGTGCTCGTCGCTCGCGTCCT 20156 30 100.0 37 .............................. TTCCAGAGTAGCGACCTCTGGGGCTTGGTCTACGTCG 20223 30 100.0 37 .............................. CTCGCCGGTCTCCCCGACTCGCCACGCCTCACGGATG 20290 30 100.0 36 .............................. TCCCGCGAAGTGTAGCGGGCCGAGTAATACCATGAA 20356 30 100.0 37 .............................. TGGGTCGAACTCGCAAATGACGGCTCCACGTTCACGC 20423 30 90.0 0 ...............C..A.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.1 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCGACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAGGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : CAGAGAAACCACCCAACGAAAACAATCACCCGAACAGTCAATCCTGGTTTCAATTATTGCTGACCCGTCAAACTACGGGCATAATTTTATGTCGGGGAGCAAACAATCACGGGTACAACAATGAGTAGAGAAGGAGATATCGGATAACGTGCGAATCATGGCACACTTATCAGCGCGTTCCGATGCTGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGGCCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGGTTCGCTTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAGGAACTACTCGCAAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCTGGGACCAGGGGGACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6560-8304 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLH01000022.1 Haloferax lucentense DSM 14919 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6560 30 100.0 35 .............................. ACGCATGAGTGATGAATCCGCATCCGAGATTGAAC 6625 30 100.0 37 .............................. GTCCCCTCGGGGCTTGAGGCCACGATTTTACACGCGC 6692 30 100.0 38 .............................. TGCGATTGTGATTTTTGCTCGGGAGGCAGTTGCCGCAA 6760 30 100.0 36 .............................. GAGCGTGAGTGCACGGAGTGCTCGGTTCAAGCGTTC 6826 30 100.0 34 .............................. GCCATCGGAGTAGACTGCGACCTCGTCGTCGCCC 6890 30 100.0 36 .............................. TGATTCGTGAGTGTCATGCGTCGATGTAGTAGGGTT 6956 30 100.0 35 .............................. GAGTACGGCACGCTCATCGACAAGTCCCAGGGCGA 7021 30 100.0 37 .............................. CGTCCGGGCAGTGACGCGATAGCGATACGTCGTCCCG 7088 30 100.0 35 .............................. TCCGTCAGGACACTCGACTTCGGAAGACACCGCGT 7153 30 100.0 36 .............................. TCCGGCCGCACAGAGATTACTGCGACCGGCGCGGAA 7219 30 100.0 38 .............................. CCCGCGAAATCCAGACGACTTAGAAGGCGACCACAACG 7287 30 100.0 36 .............................. TGAGTCGATTTTGCCGAGGTCGTTGGAGTCGGTCAC 7353 30 100.0 36 .............................. GAACCGTTGCGGACGGCGTTACATCCGCGACAGGGG 7419 30 100.0 38 .............................. GGCCGGTAGTCTGTACGGGGCACTGGCGAGCTTCGCGA 7487 30 100.0 37 .............................. TTAGTTGACTTACTGGCCGAACTGGTTGTTAACGGGA 7554 30 100.0 37 .............................. ACTGTGGGGAAGAAGCATGACTAAACGCAACAAAACT 7621 30 100.0 34 .............................. CACGTTGAGGTGTCTGCATCACGAATCTCCGCGG 7685 30 100.0 35 .............................. GACCAGCCGGCAGGGACGCTTTCGACGTGGACGCT 7750 30 100.0 36 .............................. TTCCGGAGCTTGAAGCGCCCGCGGCGCTGGTTGCGT 7816 30 100.0 33 .............................. AGCCGCTTGAGGACGAGCGCTCGCTCCCAGACA 7879 30 100.0 37 .............................. GGACTCATACGAGGGTCCGTACGTCGACGCCCTAGAG 7946 30 100.0 35 .............................. AGGCGACAGGCCCCGTTGGGTCAATCACAATCAAA 8011 30 100.0 36 .............................. CGCTCCGTCGTGGGTGTCTTGTCCAGACATAGTTTC 8077 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 8144 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 8211 30 96.7 34 ...................G.......... AGCACCTACGACCGCCGCTACAACGACGACCCGC 8275 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.1 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCCGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGACACACTTCTCGACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCTTTCTTTAGAGGGCCTGTGTCCGTGATATCGGGCATG # Right flank : CGAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAACTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGCGCGAGTGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTCCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATCCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18299-19661 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLH01000007.1 Haloferax lucentense DSM 14919 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 18299 30 100.0 34 .............................. CCGAAGCGGTCCGGGCGGTCGAGACCTCGGGCGC 18363 30 100.0 38 .............................. GCGCAATATGGAGCCAACCCAACCGTTGGCGTTGCCTG 18431 30 100.0 37 .............................. TACAATCGCCGGGCGCTGTATCTCGAAGTTGGTTCCC 18498 30 100.0 36 .............................. GGATAAGAACGGGTTGCTTGTGTTGGAGGCCGTTGA 18564 30 100.0 37 .............................. TCGTAACTAACATCGCTATCGCTCCGACACGAGTCGT 18631 30 100.0 36 .............................. GGCCATCCAGAGCGGTTGACCTACGCCGTCGAAGTC 18697 30 100.0 38 .............................. GGAGATGCGGCAGGGACGAACGACACGGGGAGAGTTGA 18765 30 100.0 37 .............................. GGTCGATAACGTCGTCTAGTGAGGTCATGGTCATTGC 18832 30 100.0 35 .............................. ACCTCTCCACATATGGGTCGCAGTTTGAAATTTTA 18897 30 100.0 33 .............................. GCCGGTGCTGGCGTCGCAGGGGCGGGCGGCGGC 18960 30 100.0 37 .............................. TTGGCGTTGTCAGTCAGAAACTTGGCGTTGACCTAAA 19027 30 100.0 36 .............................. AGCTTCCGAGCGGGGAAGCCGCTTTCTGAGTCGATT 19093 30 96.7 37 ............T................. ATCGATATCAGCAAGCAAGTTAGAGCGCATTGAGAAG 19160 30 100.0 37 .............................. GCAGCGTTACGGGTGGCAGGTGAAGAAGGATGGGCGG 19227 30 100.0 37 .............................. ATAGATACTATCGCTACTTTCATTTTAATGGTGAGTG 19294 30 100.0 36 .............................. CCCTTGGACGAAGCTCTCGCCACAATCAATGCACGT 19360 30 100.0 36 .............................. ACCCAATTCGAGGCGGTGGAGTCGGACCTCCAGACA 19426 30 100.0 39 .............................. CGACGATGCATCAACGATGCCTGACCACTTCACAGATGA 19495 30 100.0 38 .............................. TCTTATCCTCCCGACTACGATATCCTGTTGCAATGCGA 19563 30 100.0 39 .............................. GTCCAACGTTGCTTGCTCCGTCTCGGTCGTGCTCTGAGA 19632 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.7 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCACCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGATCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : AATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11348-15092 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLH01000008.1 Haloferax lucentense DSM 14919 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 11348 30 100.0 37 .............................. GGACACTCTCACCACGCACAATCTGACACGGGCGGTC 11415 30 100.0 37 .............................. GTAGAAACTATCGTTTAACGACGGGCAGCCCAGTTGT 11482 30 100.0 36 .............................. GATATGCTCATCTTCGACGGGAATTGGAACCCGGTC 11548 30 100.0 34 .............................. TTCGAGTTGGCCGCTTTCGTTTCCACACTCGCGT 11612 30 100.0 36 .............................. GGAGTTACAGAGGCCGGATGTGCCGTATGTCCCCCA 11678 30 100.0 35 .............................. GTGCAAACAACGATGATTGAACACAGTGGGGAGAA 11743 30 100.0 36 .............................. GCCGCCCGTTCGTTGCACCACCAACAGATATAGTAA 11809 30 100.0 39 .............................. ATGGAGGTCAACAAATGAAAGCAGACATAACGCCGACGA 11878 30 100.0 36 .............................. CGCCTTGAGCCAAGGCATACATGCTAATTGGTGTGT 11944 30 100.0 37 .............................. ATACCCGTCTGGGGTGGTTATCTTGTAGTCAGTCATT 12011 30 100.0 40 .............................. CCCTCCGTTTGAGTTCGGTGAGTGTGTGTTTATCATCGTC 12081 30 100.0 34 .............................. GGGCGAATTCCATCAAGCAGGCGAAGAAGAACTT 12145 30 100.0 33 .............................. TAATCTCGTTCGGTAGTCCCAATCGTCCGGGGC 12208 30 100.0 38 .............................. CACTCTTCGAGGTCTAACCCAGACATCGTTGGTCCCGT 12276 30 100.0 38 .............................. GTGTCCGGGTCCGTGTACCAGGGCATCTCAGTCACCCC 12344 30 100.0 37 .............................. GTCATCCGACACAACGCCAACTGTCAGGTCAAGGCGG 12411 30 100.0 37 .............................. GCCAACAAGGATGATGTTAATATCCCCACGTTGGCCG 12478 30 100.0 39 .............................. TCTCGTCAGAAGCACTTATTCGGGTGTTCCTACACCCGG 12547 30 100.0 35 .............................. TGTCGGCGCGGCTGGGCTGGCAAGCGGACAGGATG 12612 30 100.0 35 .............................. GAGCTACCACCAAAGATAGTCTGTGTGAACTGTGG 12677 30 100.0 36 .............................. ATCTTCGACAACGGCCTCCTGCGCGTGTTCGTCGAT 12743 30 100.0 35 .............................. AGGTAGCGGCCACCGAGGGGAGATTTGCCCCACCG 12808 30 100.0 34 .............................. ACATCATCAACGACGACGAAGAAGCACCATACGC 12872 30 100.0 35 .............................. CGCCGAGCCGACCGCGGGCAGCTCCAACTGGGCGG 12937 30 100.0 36 .............................. GCTTGAGCCTCATAGGACGTGACCCCACTTGTCGAC 13003 30 100.0 36 .............................. GTCGGACGCCCCGTCGGCATCCTTGTCGGCGTCGGC 13069 30 100.0 38 .............................. GTGTGGAAAGCGGCGGCGGTCGGAATGTTATAATCGGA 13137 30 100.0 35 .............................. TTCTTCGGGGATGTGGTAGAACCCACAGAACGCGT 13202 30 100.0 37 .............................. AGGTCGTCACTCATTCTTGAATCTCTTCGTCGATCTG 13269 30 100.0 36 .............................. TAATGCCCATCATTCCACACAATGCCCAAACAGACA 13335 30 100.0 34 .............................. ATCAACGGCGACTTCTCTGGAGCACTGGACACGC 13399 30 100.0 36 .............................. GATGACTTTGACGCCGCTCGGCACCGTATACGTGCT 13465 30 100.0 36 .............................. CAAGAAGTCGGCGGGTGGGAGTGGTGCCGCACCCGG 13531 30 100.0 37 .............................. CCGCGGCGTCATTGCCGTCGATGCCGTCGTAATCGTT 13598 30 100.0 35 .............................. ATTCGCTCGAACATCCCGAACGTCGTCGACCGCAT 13663 30 100.0 36 .............................. TCCTCGAAGTGGTCGAGTTCGTACGGTGGGACGTGC 13729 30 100.0 35 .............................. GTCCGCAACCCGTCGGTCGTTCCCGGCGCGGACGA 13794 30 100.0 51 .............................. GACTGCCATACACTCTACTACAACGCCTTCGTAAATAGTTTCAGACGAACC 13875 30 83.3 37 C..GTG.N...................... GACTGCCATACACTCTACTACAACGCCTTCGTAAATA 13942 30 100.0 36 .............................. CTATTCGGTGTGAGTGTCGCAACGGCATTCACGTGG 14008 30 100.0 34 .............................. GCATCACGAAGGAGTGAATGGAGAACGCCGGCGT 14072 30 100.0 36 .............................. GACCAGTCGGTACTGAGTTCCGCGCGTGGCCCCGTG 14138 30 100.0 37 .............................. GACCACTGGCTCGGAGAGCAACAACAACACAATCAGT 14205 30 100.0 36 .............................. GGTGGATGTTGACCTGTTCTATCTGGGCGATTATTC 14271 30 100.0 39 .............................. GAACTCACGGGCACGAACTGGTACGACCTCATCTGTTTC 14340 30 100.0 37 .............................. ATCGACATCACGGATATCTCTCCGACCGACCCGTTTA 14407 30 100.0 35 .............................. GACCGCGGCAACACTCCTATCGGATGCTATCTCGA 14472 30 100.0 36 .............................. GGCGGACTATGCGGGCGAGACATGGCAAGAGACGTT 14538 30 100.0 32 .............................. TCCGGCCGCACAGAGATTACTGCGACCGGCGC 14600 30 100.0 37 .............................. TCCCCGAGGACGGCGAGTACGTGATCCGCGTCGAGGA 14667 30 100.0 35 .............................. ACCGTCACAGACTGGCAAGAGGGCTTCTATATCGA 14732 30 100.0 35 .............................. AGCGACTACGACCTCATGCAGGAGGACACAGGACA 14797 30 100.0 37 .............................. CCGAACCGGGCCGCCATATCACGGAGTCGGACCGAAT 14864 30 100.0 36 .............................. CTCGTGGCGTACGGGAAGAACGTCCGGTCGTCACTG 14930 30 100.0 37 .............................. ACACTTCGGCGCGCGCCATGCACTCGGCGCACCAGCC 14997 30 100.0 36 .............................. CCTCTCGAGGGAGACGAGGAGCGCCGCGAGGAGTGC 15063 30 93.3 0 ...A..................A....... | ========== ====== ====== ====== ============================== =================================================== ================== 57 30 99.6 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACACCACGGGCGAGCACGCACACGGGAAGCAACGTGAGACGTGGCTTCCCATCGACCTCGAAGCGCGAATCAATCGCTACGTTCAGGACGACGACAACGACATCGGCCCGAACGACCCTGTCGTCCAGCGCTCGAAGCGAACTCTCCAAGGCTGGGTCGACCGCGCCGCCGACGCAGTTGCGGACGCGACCGGTGACGACGACTACCGACGGGTGTCCAGTCACGATCTGCGCCGCTGCTGGGCACATCATCTGCTCGTCGAGGAAGGAGTATCGCCGCGAATCGTGATGGCACTCGGCGGCTGGTCCAGTTACGACGCTATCGAACCCTATCTCGCAGCGCCGTCAGAAGAGAACATCATCAAGTCGATGAGCGAGGTCTCGCTCTGAGTTCCAGAAACTTCCGTCGACCCCCCGGGGGTTCAGGAGGAATTGAGGGTCGACGGAAACGTTGATGTGAATTCGCCACGTACAGTCGCCTACCCCCGTGAATTCGGGACG # Right flank : CGAGGACTGGTCTGAGAGCGACGGCTGGACTGGAGGCGTTTCAGACGAACCTGGCGAGCAGTTTGAAGGGCGTGGACTTAGTGTCGATTGTGCCGTTTGATACCCCTCCCCCCGAACTATTACAATAATGGAGTTGAGATTGCACTTGTGCTTTCTCATCCGACCGAAAAACCCCAAAGCGGGCTGCGTTTTTCGTCTCTTTCCAGTGGTATCGAAACCGTGGTGATGGAAGTGATGCGATGAGAGTACTGATCGATTTGGAGGCAGAGATGGACGCGGCCTATGATACAGAGTATCACAGCGGACTCCGGAGGCGGATGTGGGACGCGCTTCGCGACACCCCGTACGATGAACATGGTACGGAAACGCCCGGGTTCTCGTTCTCCAACCCGTTCCCGTGGGGTGAGTTGGAGGAGGGCGACGAGCGCCAACTGCTGGTTGCCTCTTCCCGTGAGGAGCAGTTGGCACACATCGTCGCCGACCTGCTTGAGAACCCCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 23151-24568 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLH01000008.1 Haloferax lucentense DSM 14919 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23151 30 100.0 37 .............................. AGGTGCAAGCGAACCCCCACCACCATGATACTCGAAT 23218 30 100.0 35 .............................. CATATTTACAATGCCCCGAACAAACCCCACCGACG 23283 30 100.0 36 .............................. CGCATCCCCGGGTCGGAGACAAATAGCATGTGAATA 23349 30 100.0 35 .............................. TCTGTCCAACCGTCGCATTAAGACGAGCACGTTGC 23414 30 100.0 38 .............................. ATCGACCGCCCCGACCCCACCGAGGACTCCAAGCTCGC 23482 30 100.0 35 .............................. ACCCGCGAAGCCAGTGGCGAACTCGCCGCCGCCGG 23547 30 100.0 36 .............................. AATCGGGTCAGGCGCGCCCTTTGAAACGCTGACAGT 23613 30 100.0 37 .............................. ATCGAATCGGTTTCGCCGCCGTCGCCACCGTCGCCAT 23680 30 100.0 35 .............................. ATTAGGTTAATCGTCACAAGCCTGTCGGTGGTTTC 23745 30 100.0 36 .............................. AACGACTAATGTCCCGTAAACCCACACAGAAGACCG 23811 30 100.0 37 .............................. GAGATCCGCGGCGCTCGTGGCGGTGATGCAGCGACTG 23878 30 100.0 36 .............................. GAGCAACCAGAACGCCGCGTCACGACACTCCGACAC 23944 30 100.0 38 .............................. CTTTGGGAAGAAGTATGTCTCACCCCCAATTTTGGCCT 24012 30 100.0 36 .............................. GCCGGACGATACAATGGCGAATCGCCATGCCGGACG 24078 30 100.0 37 .............................. ACACCCTCCGAACGGCTGTTGCTGTCTGCCGACGGTA 24145 30 100.0 34 .............................. GGTCGCAATCAGTTGGCCTGCTCCATGACGGCCT 24209 30 100.0 37 .............................. CGACTTGCTCCAGTCGATCTGCTTCGAAGAGTCGATG 24276 30 100.0 35 .............................. GACACCCTCGACGACGCCGAGGACCGGCACGAGGC 24341 30 100.0 37 .............................. CGCTTCAACGGCGTCGGGGTGATGTTCAGATGAGCCA 24408 30 100.0 35 .............................. GTCTCGCTCGGGTAGATAAACTGGGAAATCTCACG 24473 30 96.7 36 ............................A. TCAACGCCGTCTCAGACGGGTCCAGTCTCCAGATTA 24539 30 83.3 0 ..C.............C.....A...GT.. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GGGAGCCCAGGTCAACACCGACCCGGACGGGTGTGCAACGGAACTCGCGGTTGGAAACTCGCGGTACCTGCTGGTGGACGCCCAGAGTCGTTCCTACCATCCCGTGTTCGGCGTTCGATGAGCGACTTGCCTCAGGTCGTCACCAGTTGTGGTATCTTATTGCTCGTGAAATCTGGGTTTGAAAACGCTTGGGAGGAGATCTCAAATCGCGCCTCAGATAGTTTTAATGAATTGCGAAAGTTTCAAAATGATGACTTTCCCGATGACCCCCGGTACTGGGACCATCCGATTCGGGCAAGAATAGAAGAATTTTGTTACCGCTTATTGAACCCTGTACGAGATGATTAGACTATAATAGTTTGTCTATGATAGTCGATTCTCAGCAGGGGAAGAAGAGAAACTTCCGTCGACCCCCGGGGTTCCTAAGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCATCATGTACAGCCGCCCACATCCGGTAATTCGGATAG # Right flank : CTCAGAGAGGTCGCGCCGCTCGCCGTCAGAGATCTCTACGGACATCAGCAGCGAAACATGACCTCCTTGGAGCGATGCCATCGCATCCTCGACGTCGGACAGCCAGGAGCGACAGAACCACAGCTTCACACGACGACGAAGCCCGCGAATCACCTTAGACAACTTCCGGATCTGCATCCTGTATAGGAGGCTGGTCAAAGAGACTAGCCTCTGTGTTGGCCATCTCAAGATGCCCAGCGATGTGTTCGAACGCCCTCTCAACTTCACAGGGTTCGTACAACTTTGAGCAGAGGTTACATCTCAGGTACCACTCGTCCTCAATCTCAACAGAAGTCCCAAGATGTGCGTAATCCTTGGATTGGAGATACTCGAAATCGTACTCTTCTCGCGTTGACTCATCGGACACAGCCAACAGGTTGGAAAGTGCCTGGCGGAGTCTCCCGACCGGACCACCAGAACTATTCACCGTGAGCACCCCCGTGTCTGAATTGAAAGACTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //