Array 1 681402-683200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHF010000001.1 Gardnerella vaginalis strain UMB0558 ERS1455150_SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 681402 28 100.0 33 ............................ CCAACGGGATAAATAGCATCAATAGACATAATT 681463 28 100.0 33 ............................ CGCAAACGACGAGGAAAAATAGGACGCACAATA 681524 28 100.0 33 ............................ TTATTTCATTACTGCTTTTCGTATTCGGGGTGA 681585 28 100.0 35 ............................ CGCAAACGACGAGGAAAAATAGGACGCACAATAAG 681648 28 100.0 33 ............................ CCTGCTGAATAAGGGCATCTTGGTAGCGGCTAG 681709 28 100.0 33 ............................ TAATTCCATAGATACTTTGCTTAAGTCCATTCA 681770 28 100.0 33 ............................ CTCATGTGAAAAGTTATTCTCTTGCCTTTTCAC 681831 28 100.0 33 ............................ TGATATTAGCGTCGTCGGCTTTGCGTTCTTCCG 681892 28 100.0 33 ............................ CATGAGAACTAAATATGACCACAAAACACCACA 681953 28 100.0 33 ............................ TCACACTGAGGTGTGAAGTGGCCGCAAAGAAAG 682014 28 100.0 33 ............................ TCACACTGAGGTGTGAAGTGGCCGCAAAGAAAG 682075 28 100.0 33 ............................ TATTTTGCATCTCACGCCTCCTAGCAAACCACA 682136 28 100.0 33 ............................ TATTTTGCATCTCACGCCTCCTAGCAAACCACA 682197 28 100.0 33 ............................ CCAATGGTAGTGGCTAGAACCCCTAGCCTCAAT 682258 28 100.0 33 ............................ CATAAGCAAGGGGGTGAACAAAAATTTTTTTAG 682319 28 100.0 33 ............................ CTTAATACCTTCTAAGTTTCCTGAAGATGAATA 682380 28 100.0 33 ............................ CTACGGCTTCTGGACGATGTACCTTAAGCAAAT 682441 28 100.0 33 ............................ CTACTGTTTGAATATCCATTTTTATCCTTTCTA 682502 28 100.0 33 ............................ TTCACGTGAGTAAATATCTATCCAATTTGTAAT 682563 28 100.0 33 ............................ TATCCGAGGCCGAAGGCATGGCGTTACTCCGTG 682624 28 100.0 33 ............................ CGAGTGAGAACATAGCAGATACTATTGCGTCTA 682685 28 100.0 33 ............................ CGTGAAAGTATTGAATCTTGGAACGCGAGCCGC 682746 28 100.0 33 ............................ CAATTGCAGATCACTATCCTTTAGAACGCTTCG 682807 28 100.0 33 ............................ CTACAGGCGCGGCGTGGTCAAGCCGTCAGATAT 682868 28 100.0 33 ............................ CTACAGGCGCGGCGTGGTCAAGCCGTCAGATAT 682929 28 96.4 33 ..........................T. CACGAGCTTTTTGCACACGTGGCTGATGCTATC 682990 28 100.0 33 ............................ TGTGCCATTTAAGGCGGAAAGACAAGTAGCGGA 683051 28 100.0 33 ............................ CATAGTCTTTTACAGCATTCACAAAGTATTCTG 683112 28 100.0 33 ............................ CAGTGCCTTTAAGGGCAATTACAAAAGACGGGA 683173 28 92.9 0 ....................A.....A. | ========== ====== ====== ====== ============================ =================================== ================== 30 28 99.6 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATAAAATTATTGAGCTAACTGGTATTACAACTAATATGCTTGAGTCTTATGGTGTAGGATTAGATTTAGCATTAAGAGAATTCATTGATTTTATCGGAAAATTACCGATACTTGGATACAATATACAGTTTGATATGTCATTTTTGAATTCTGCTTTATCTTCATTAGGTGAAAGATTTGACGATTCTCTTTTAATTAATAAAATTTTTGATATCTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAATTACCAGCTAAAGACGGTGCTGCACGAATACAACATTTCTGAATCCGTTCCGCATAGAGCTCTTCTGGACGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGTTAAAATTTATTTCATAAAAATAAAATACTGTTGTACCATGTTCTGTGATAGGTTGAATTTGAAAAGTAAATGAAATTTGACTGTTTCTGTTATGGAAATGGCCATTTTTATTGGGATTTTAAGT # Right flank : CTATATAAATATTGTGATACAGTATAACCAGCGTGGGGACCTCGGCAACCAGCTTTCAAGACTGGAACATCAGTCTGAGGAGCACCCCACGTTTTTCAGTTTTTTGCAACGATTGAGCGAGAAAAGAAAAAAGGGTGGCGCGTTAATACCTTGTTCTCAGTTGTGGAAAATAAGAGAGGAGTGAAAAGCTAATGGATATAATGAAACTTTGCTATGACATGGCTGAGAAACTTCGGCCTTATGCTGAACCATACATGGATGAAACTTGGAAAGAAGCAGCCAATAGTGCTATTCGAGCAGGCGAACCGTCTATTGCAATTGATTATTATTTAGTAGAAGCATGGATGCACAAGAGTGCACCTAAAGAGTTGCTAATTGAAGCTTATAATTTGCTAGATCCTTATGAATGTGGTGATGACTATGACGATATAGCAGACGATTTAGGAGTCCCGCGTAAAGTTCATTCACCAGATGAATAAAAAATAATTTTTATACTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //