Array 1 169456-169068 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDI01000002.1 Yersinia pseudotuberculosis strain N912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 169455 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 169395 28 100.0 32 ............................ AGATCGTTCAGGATGCAGTAAGCCAGCCATCA 169335 28 100.0 32 ............................ TTTTTCTACGTCCTTATCGGTAAACAAATCAG 169275 28 100.0 32 ............................ GTCACGCAGAACCTATCACAATGCGGAATGGG 169215 28 100.0 32 ............................ GTTAAATTCGGCATTATCGAATCACCACCAAA 169155 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 169095 27 89.3 0 .....................CC.-... | T [169070] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15178-16526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDI01000007.1 Yersinia pseudotuberculosis strain N912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15178 28 100.0 32 ............................ CAAATAAGTATAACACTATAATTAATAATTGA 15238 28 100.0 32 ............................ TTGATGAGCCATGGTGTTACCTCCAGTTAATA 15298 28 100.0 32 ............................ TCATTGAAGTAATTGTTTTAACATCACTATAA 15358 28 100.0 32 ............................ TAAAACGTTTCTAGAAGCCCAAGAAGCGCCAG 15418 28 100.0 32 ............................ GACACGTTGGATGAATCACAACAGTTAATTAT 15478 28 100.0 32 ............................ ATTTAAAACGTGAGCAATAGATATGCATAACC 15538 28 96.4 32 A........................... AAAAGTTAATTCATATCCATTCTCATAAGCAA 15598 28 100.0 32 ............................ ATTAAATCAGATTTATTAACCTCATCGCTATT 15658 28 100.0 32 ............................ AAGAGATTCACCGGCCATCAACCGGGCGCAGG 15718 28 100.0 33 ............................ CAGAAGCATTGATATCTTCGGAATGAAGCTTTC 15779 28 100.0 32 ............................ TTCAACTGGGATGCTGAAATCGGCGTTTGTTA 15839 28 100.0 32 ............................ GGTTTGGGATGGGTTGCAATATACTTGCATTC 15899 28 100.0 32 ............................ AATGTAATCCGGCAGGCCGTAGACTTGCTGTT 15959 28 100.0 32 ............................ TATGCAATACGCCATTGCAGGGTATCCCGCAT 16019 28 100.0 32 ............................ TAGGGGATGGATCAGGGCGGCGGTGAGTCGGG 16079 28 100.0 32 ............................ GGAATGCGCAGCACGGCATAACCAATTGATAA 16139 28 100.0 32 ............................ GACGAATGGCCCGGCATCACCCGTTGGCCTGC 16199 28 100.0 32 ............................ GTAAGTCCGAATCATTAACAGCGAGGTAGGTA 16259 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 16319 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 16379 28 100.0 32 ............................ GGCGCACGATTAAACGAAGCGCTGGCCCTGAC 16439 28 100.0 32 ............................ GAACGAGAGGCGATATGCCAAATCCAAAAAAT 16499 27 85.7 0 ...................-A.A.C... | T [16523] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAATGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //