Array 1 34214-33843 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000021.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 34213 32 100.0 39 ................................ TTGCGGGCCGTTTCTGAGAACGGTACAACAGCTAAGGGT 34142 32 100.0 36 ................................ AATATCCGACTTTTTAGCCGCAGCCATCTCCCCCAT 34074 32 100.0 34 ................................ ATCTGTGCATATAAGTCGGGGATCGCATTGGCTA 34008 32 100.0 35 ................................ AGTCAGCAACTGTTGATAATTGACGATAGACTGTA 33941 32 100.0 35 ................................ TTTTTACGAATACAATACGCACGCCAGATGACATA 33874 32 87.5 0 ....................C.A...CA.... | ========== ====== ====== ====== ================================ ======================================= ================== 6 32 97.9 36 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Left flank : CTTAACAGAAATCGATCTTATCGCTAC # Right flank : CCATGTACCTGTGCGTCTAAGAAGCGTAAATGCCATTACTCTCCCTAGAAAAATACATAAACCCCCCCCCTCACCTCTAAGCCACCTACAACTGATTTCCCTTCTCCTTATTCACAGAGATTGCCCCAGCGTCTCACATCCTTCCACCAATAGCGCACTTTCCCCGAGGCTTCTCCGTTCTATATTCCTCTACGCCAAAAACGGCTTCCTGCACAGGAAGCCGTTTTACTATACTACATCCTCACATCATACTCGCTTTATTACCACGTACAGCCCACACTCTATTAACATCTTAACTAATCCAGCTCGCCTACAACCCATCATCTGCTACCAATCACCAGCACGAGCTTACCCTCATCTCACCAGAAAAACCGCACCACTGCCATACACACAACCCCCACCACAACCGTCAACGACAAGCTTTTCGTCTTCAACGCGACCAGTAACGTCGGCACCAGCACAATCACCGCCGGCCATTCAATATGAAGCGTACCACTTTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 383134-382694 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000001.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 383133 32 100.0 34 ................................ CCAATATTCGTAAGCGGTAAGCTGGCGATAGGCT 383067 32 100.0 36 ................................ AGTGGTTCGTCCATCTCCCACTTTGTACCAGTAGGT 382999 32 100.0 37 ................................ ATGAAAATTTGTTGAATCAAATGGCGAGTTGGTATTG 382930 32 100.0 34 ................................ AGGAAGATCTGCGGCTGGATGATATCCCGCACAA 382864 32 100.0 35 ................................ AAGCTGGTGCTTATCTAGCTACACTTCAATATGTT 382797 32 100.0 35 ................................ CTTGCATCCTCAGAAGGAACAGCAATTGTTACGGA 382730 32 87.5 0 .............T........A.T......C | TTCCA [382704] ========== ====== ====== ====== ================================ ===================================== ================== 7 32 98.2 35 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Left flank : TGATCCGTTTGCGGATCGACAATAGCATTGACTCCCATTTTGAGTAAAGGTGAGAGTGTAAAAATAAAGGCTAATTCAGCAGCACTTAAATACTCTTGCTGACATAAATAAAGGATATTAGGATTAATAGTCTGTGAAAACGGAGTACGATTAACTCGCTTTTGCCGAATGATCGTAAAGCCTTGCTCATTGGCTTTAGTAGCTTCTTGATTAACTAGATTTAGATCCACTTGTTCTCTACGCTTTGCCTGCTGTTCCGCTTGACTGAGCCTTTTTCTGAGTTGATGCTGATCTGACACTGTTGGTATTCACCTCCTATAATCAGTAAAAAAGTGCGAACCCCAAGTTCACATAAAATCCCTGGGAGGTTCGCACTCCTTGCTACATAAGGGATTTCAGCATTTTTATTGTATTTTCCCACCTTTTCCGTTACTCTAACAAAGAGGTTCGCACTTTTGGGCTTGAAATGCCTTGCTGTGTAAGGGCTGAAAGTGCCTACT # Right flank : TATTTAAAGAGCCAATTGAACAGTACGAATGGGTAGAAGATATACATATACATACCAAGCGCTATAAAACTACCTATAAGTAGGGCAAATAGGACACGCCAAACCTCGGAATGAAAGAAACGCAAGCAACCTGCCACGAACACTCCAACTATTAATATGATTGCCATAAATGTATCTAAGACTTTCCTCATTTTCATAGATATCGACCTCTCTAAAATAACAATTTAATTACTCCATAAACGCAGCTAAGTATGAATGCCAAATTGATCATAATTTTATTTAGCGGTTTCTGAGGATTCTCCTAAAATATATGAAAGATCACGTCACTTAATTGATACAGCATACGAATGCAGCCTGCCATACAAACTCCAATTATTAATAGAGTTCCAATAAGTACATTAGTTAACGTACGGATTGTAATTCCAAACATAATTAATATACCTATTATTGCAATGATAAATTCAAAATTAATTTCTTTCATCTATATCATCCTTTCTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 392694-393059 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000003.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 392694 32 96.9 34 ...................T............ AATCCGAAAACGAACAATATCGCTTTAAAAGAAT 392760 32 100.0 36 ................................ ACCGTTGTACTTAATGCGGATCTTACGTGCTGTCTC 392828 32 93.8 36 ...A...............T............ ACTACTACATCCAGGAGTCCGAAGCTGGATATGCGC 392896 32 96.9 33 ..........A..................... ATCATCCATTTGATCTTACATTTGCTATCTCTG 392961 32 96.9 35 .......................A........ CTGCACCTTGTCGTAGTTCATCCCCTTCTGAGCGA 393028 32 93.8 0 ..........A..........C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Left flank : CTGATGTCCAGCACATCTCATTCCCTGTCCGCTATCGCTACCATGCTACAATTTCACGACCAAAGCTATTTTACGAAAATATTTAAAGCCCATACGAACCAGACACCTAAGCAATACAAGTCCGCTGCAAGCGGCGGCCATTTACCTTTGGCAAGAATATAGGGATGTGAATAGCAGCTGGAGATCAATTACGGCTATTATAAATTAAGGATAGTGTGCAAAGCATTACACCATGTTAAACTGCAATATCGCTAATACCAAATTCAATCTTCACCCGTTCACCTATAGTATTAGATTATCCCATCTTTCACTTGCTTCATTACACCATTCCAGTGCGAACCCCAAGCTCACATCAAATCCCAGGGAGGTTCGCACCCCTTGCTACACAAGGCTTTTCAGCATTTTGGTTGTATTTTGTCTCCGTTTCCACTACTCTAAAAAAGAGGTTCGCACTTTTGACCCTGAAATGCCTTGTTTTGTAAGGGCGCAAAGTGCCTACA # Right flank : TCCATATGACGTGTGCAACAAATTTGCCACATAGCCCATCACTTTACATGTTGTAAAATAACCTAAAGGCAATAAACAACCAAAAGCAAACACTTCCTCATCCGCGCACTGCTCCAGCACATATGCTGTGAAGGCACGGAACGGAGGAAAGCAAATAAGGGCAAAGGACGACTTTGGCGTATGGAATCTACATTATTTCCACATTCGTAGATTCCATACGCCACCGGAGTCCGTGCCCTTATTGCTTTTCGGAGTGGATTCCCCTCACATCCACTTCATGGTGCAAGAAACTGCACTTCACCTCACAACAAGTTCATACTACCTCCAATAAGCCACCTCCAACAGATTCCCACCAATCAACAAGTTCCTACCAATTTACAGCAAAAACTCCATGCAATCCCCCCACTTCCCACCAAAAGAAAAAAGCCAGCACCCTCCCAAAGGAGAATGCCAGCTTTTCAATCCATCCATCACTACCCATATCGTTAACCGAAAGCAGT # Questionable array : NO Score: 8.49 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 153789-154226 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000004.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 153789 32 100.0 35 ................................ AGGATGCTATCCAATCCTTGCAGGTGTTGAGGTTG 153856 32 100.0 36 ................................ GTAACCGGTGATCGCCATATACTTATGCGTAAAATC 153924 32 100.0 36 ................................ CGCAGGTGTCTAATATTATTGCTGCATGGTTACCGA 153992 32 100.0 34 ................................ CTGAGTAACAAAACTTTTTAATGCGTAGGGACTA 154058 32 100.0 37 ................................ CAATTACCGCTCGCATCCTGTTCCAGCAGGCTAAACT 154127 32 100.0 36 ................................ TTTAGAAGCTCTGTGGCGTCCATATACGCATTGAGC 154195 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 100.0 36 GTCACTCTCCGTGCGAGAGTGTGGATTGAAAG # Left flank : CTACTGGATTAGGAGTAAAGGTAGATTCCCGCCCCTCCAAAGTCGTCCTTTTCCCTTATTTCCTTGCCTCCGTTCTGTAGCGTGCGCATACGTATGAGTTCACTAAGATCAATGAAAATACAGCGCTATAGTCTCCATACTTTATTATTAGAATCAGAGTTATTTTATAAAAGCTGTATTCGTTCTAATAACAAAAGCAATCTAAGCATATTCCAGCCCATCTGTATATGCAGCATATTCGCCATCAGCCCAGAGCTAGTAGTAAAACATTTACGTACCTATATGATCTAAATAATTATGATCCAAATAATAATTAAAAATAGCCTCTGCAAGCGCGAACCCTAAGCTCACATAAAATCCCTGGGAGGTTCGCGCTCCTTGCTACATAAGGGATTTGAGGTTTTTTGTTGTCTTTTTCACCAGTTTCCAGTAGGCTAAAAAGGAGGTTCGCGATTTTGAACTGTTTTTCCCTTGCTACGAAAGGGTTAGAAAGGCATGCA # Right flank : GCATCAATTCGACAGCTGTTGCATGATGTGGATGCAAGTCACTCTCCGTGCGAGAGTGACTTTCAACATCGGCTCGTGTACTTTCGGTTTTAATGTATTACCTACATCTTCCTGATGCGAGCATTGCAGAACGGAGGCAAGGAGATAAGGGGAAAGGACGACTTATAGTGTTAGTGATTTCCTAACACGGGGTTCAATGGAAAAGTGATTTTTGCGAAGCAAAATATCTTACTGCTTTGGAGGGGCGGGAATCTTCATTTCTTCCCCATTCCAAAAGATTCCCGCGGCTCCATCCGAGTCCGTCCCCTTATTCCTTGACGGAGTGGTGTAACCATACCCATCACACCACTCCATACCCAACAAGTTTAATTCAAATTCCAACCACCACATTTGCACTATTCCAAATCCCCACCAACTGTACCCAAATTCCCAACCACCTGTATGACAAAAAGACATACCCTTCAGCAGCATTAACCTCATTTCAAGCCAGCCCATCAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCCGTGCGAGAGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 106983-106409 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000005.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 106982 32 96.9 40 ........T....................... CTCTCTACCTCTGGCAGTGCCATCAGCCGTGACAAGTATG 106910 32 100.0 35 ................................ CAAGCAGGCACGATCAAACGCCTGTCTGACCGCCT 106843 32 100.0 36 ................................ AGCAGTTGAGTCAGTGTCATTGTGTTAGTAGTAGTT 106775 32 100.0 35 ................................ GATACTTTGATTCGCGCATCTTCCATTAGTAAATC 106708 32 100.0 35 ................................ TGTGAGGAAAAGTAGAGAGGAAAGACTTGCGGAAT 106641 32 100.0 36 ................................ GGTATATGCCAGCACATAGTTGTCAGTGGCATTCGC 106573 32 100.0 35 ................................ GCAAACTACTGAGTTGCCTGTCACCAGTGCACTTG 106506 32 100.0 34 ................................ AGGAACCAATCGCACGACCTGTAATTTCTCGTGA 106440 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 9 32 99.7 36 GTCACTCTCCGTGCGAGAGTGTGGATTGAAAT # Left flank : GTGGAACTGAATTTCAGCTGCGCGTATGGGAAGCGTTATGTAGCGTGCCGTATGGTGAAGCTGTATCGTATAAGCATATTGCTGAGAAGATCGGCAGTCCGGCGGCGGTACGTGCAGTCGGTGGAGCGAATAACCGCAATCCGGTATCGATCATTGTGCCATGTCATCGGGTGATCGGGATGAATGGACAGCTAGTCGGGTACGGCGGTGGCTTGGATAATAAGCAGTATTTGCTTGGATTGGAAGGCTGGCGTGGGCTGGAAACGGAGCCGGTGTTGTTTTGATGAATGGTGAAGTGGAGCAATGAGCTTGGGAATGTAGGCGGTACATAAGTGCGAACCCCAAGCTCACATGAAAACCCTGGGAGGTTCGCACCTCTTGCCCTGTAAGGGCTGCGGGGTTTTTTGTTGTATTTTGGCATGTTTTCGAGTAGGCTAAAAATGAGGTTCGCACTTTTGGTCGTTTTTTTCCTTGTGGGATAAGGGCTGAGAGGGTGTACA # Right flank : CAAATCCCAGCACGATCTAAACGCTGATATTCCAGTCACTCTCCATGCCACACTCATCTTCCCCAAACCCAAAAAAGGCAACCTCCCACCAACAGAGGTTGCCTTTTTTCTATTCCATCTATCCATACCACTCAAATCCGCATATCATCCGTCCGCCAGTTCGTGATCGCCGCATGAATATCTTTCCCTGACAATTGCTCGTTCACTGCACGCTCGCACAATGCTGGCAGCTCCGCATCACTCGCATTACGCAGCGCGATAATCTGCTCTCGTGTCACACGTGAATCCATTTCTTTTCCTGTTAAACGATAATATCGAAACTGCTCCTCCATCCGTACAATCCGATCCTGCGTCTTGGTCGCATACACTCGAATACGCGGAATCGCAAAGCACAGGCATAGCAGCAGCACGAGCAACAGCCAGGCGAGCAGTGTATTCTCTCCACTGCGTAGCGCGTTGATCCAATACGTAATCGTGAGCACCAGCGTGATTAACAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCCGTGCGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : NA // Array 1 28181-28481 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000006.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 28181 32 100.0 34 ................................ CGTCAAAGAACAATGATGCATCCCATAGAGTTTG 28247 32 100.0 38 ................................ ATGATCTATAGATACTACTACAAAAGAGACGATAGAGC 28317 32 100.0 35 ................................ TATGAGCGCAGGGGTAACGTCAAATACCCCGTGCG 28384 32 100.0 34 ................................ TCGTCTGGTTTGTGGAACATCATGATTTTTTCTA 28450 32 84.4 0 ....T..T...........CA.......C... | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 96.9 36 GTCACTCCTTGCACAGGAGTGTGGATTGAAAT # Left flank : AGTAGAAGATGCACAATACCTTGCAGGCAAAGTCGCAGGCATTCGCATTTTCGAGGATGAAGCAGGTAAAATGAATCTCGGCATTAGCGATATCGGCGGCGAAGTGCTGTCTGTATCCCAATTCACCCTGTATGGCGATTCCCGTAAAGGCAAGCGCCCCAGCTTCATTGAAGCCGCTCGCCCGGACGAAGCGATCCCTGTCTACGAAGCCTTCAATGAGGCGCTGGAGCAGCACGGATTAACCGTAGCTACCGGCATCTTCGGCGCCGACATGGACGTCTCTCTAACCAACTGGGGCCCCGTCACCCTCATCATCGACAGCCCCACCAAAAATGCGAACCTCAAGCTAACATAAAATCCCTGGGAGGTTCGCACCCCGCACCCAGCAAGGGCTGCGGGGATTTTTGTTGTTTTTTGATATCGTTTGAAGTAGGCTAAAAGAGAGGTTCGCACTTTTAGCCACTTTTGGCGTTGATACATAAGGGCTGGTTGGGTGTACA # Right flank : TACAGCACTTATTTAAAACAGATTTTCGAATATTTGAGTCACTCTTAGCACGAAATTTCAAATTAAAACACACCAAACTTGATCAATAAATCACTAAAACACTTACTCCCCAAATCAACTTAACCCACTCGCATGGACAAACTACACCATCCCCAACTCGCATAATCTCCCCCACCTGAACGAAGGAAAGGAAATAAGGGCAAAGGACGACTTTGGAGGGCGGGAATCTACATTTGCTTCATCATTCGTAGATTCCTGCGCTCCACCCGAGTCCGTGCCCTTATTCCTTTTCAGAGTGGGGTCGCCAATCATGCTCGAATACGAGTACTCCTACCACATATTCAATCACAGCAAGCCCACTCCTTTCCCCAGCATGTTATATCCGCTCAACAACAGGGTAATAACATTAACGAAACCCAAGCCCATATCCCGCTTGCACCCGGCAAAGCAATAACCTGTGCTTCCTGTTCAATTCTATCGAACTCCATACACACCAGCAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 9660-8825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000008.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9659 32 100.0 34 ................................ GCAACAGTAACGTTATCTACGTCAGCAATCTCGA 9593 32 100.0 35 ................................ ACGATCATCGACAAGGTAAAAGGCACCAAGTAGCC 9526 32 100.0 36 ................................ CTCAACCACCTCAGGCTTAGCTTGGAATAAGCGCAC 9458 32 100.0 35 ................................ CTGATCAATGGCGTATCCGTCTGCTGTGCATACAC 9391 32 100.0 35 ................................ ATAGTTATGTTTATTAAATATCCCTAACAAGCAGG 9324 32 100.0 36 ................................ AACCATTGTTCAAGGTCTTTCTTTTCACCCCAACGT 9256 32 100.0 34 ................................ TGTATCATTCCACTCATGATCCACGTACCCGATA 9190 32 100.0 34 ................................ GCAACAGTAACGTTATCTACGTCAGCAATCTCGA 9124 32 100.0 35 ................................ ACGATCATCGACAAGGTAAAAGGCACCAAGTAGCC 9057 32 100.0 37 ................................ TTGTGTACATTCTTGACCACTGGCCATGTACTCATCA 8988 32 100.0 34 ................................ CGGTACAGAAATTAAGGTTGTTAGCTCGTTCGGC 8922 32 100.0 34 ................................ ACCCAACCGCCTTGCAGCACGAGCCGCCGGCGCG 8856 32 81.2 0 ................A...A.AA..CA.... | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 98.6 35 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Left flank : CATCTTTTGATCACTCCTTCAACCTGTGTTGGGGATGAGATACGGACTTGCAGCGAACGGTATCGCTTTCTAACAATGGACAACCGGAGGCGAGATTTTTCATGTAAACGTTATCTTAATTGTTGATATTCTATCTCTATTCCATTACGTTGAATAGCGCTTCGATCTCAACCTTTGACAGAGCCAGCGGTCATTCCTGCTACAATTCGTTTGTTGAAAAATAAAAATAATACTAACGGCGGAATTTTCTTTAACTAAAGGATGATAACGATAATGCACAACTTAGCAGATATATGTCGTGTGCTTAGTCAAACCGGAATGCTGACCTAAAAGTGCGAACCTCAAGCTAACATGAAATCCCTAGGAGGTTCGCACCCCTTGATACATAAGGGATTTTCCTGTTTTTCTTGTAATTTCACTTCATTTTAGGTAGTCTAATTTTGAGGTTCGCACTTTTGCTATATAAAAGCCTTGCTGGATAAGGGGTAAAAGTAGGAACA # Right flank : TTATATCCTTTTATCGTCAGATCGGTAACTTGCCGATCCGTTTCCATGCAAAAGCAGATATTACATCCACGTCAGCAAGCTCTAACCCAATAAACAACACCCCACCCACAACAAAAAAAGAGAGTCGCATAATATCACTCGCGACTCTCTCCTAAACATTCACCTTTAAAGTAGCAATAGCCCTTCTGGATCATAGCCCTGCTTTGCTCCCACATGCTCTACTTTCCGTTTCCAATTAGCTCCCAGCATATAATACCTCAAACTGTCTGCTGTAGGATCTATGACTGCTTCCAGTTGAACTTTAAGTTGTTTAAACTGCATCGGATCGACCAGACACTCAAATACAGAATTTTGTACTCGCTGACCATAATTTTGACATATTTTAGAGACAGCGCGTAGCCGTTTCGAGCCTTCAGGCGAAGAAGTTTGTACGTCATATGTGATCAGAACCATCATACAAACTACCCCTTTCTCTATAGGTAACGTGAAATATTCTTTAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 194025-194258 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMB01000008.1 Paenibacillus hunanensis strain CGMCC 1.8907 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 194025 32 100.0 35 ................................ TCAATAAGCTGGATATTCAAAATCGAGCGAAGATC 194092 32 100.0 37 ................................ GATAATACACTGCACCAGCTGATAAAATTGGAGTGTC 194161 32 96.9 34 ..............A................. TAGCAGCTCTGCGATATCGTAGTGATACGTGGAT 194227 32 87.5 0 .........G......CG......G....... | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.1 36 GTCACTCTCCGTGCGAGAGTGTGGATTGAAAT # Left flank : TGTCTTTTTTTGAATATAACTAGATCCATTGCATTGCGTTACGAGTGTGGCACCAGTCAGTATTCATTATACGTGTAGCTAATTATATTTTCAAAGTAAGAAAATTTGGTGAAAAAACGAAACAATTCACCATAACTACATCATAAATATAGAAAAATTATTAAAAACGAACATTATGTGATGACATATTTATCCATAACCCCAAAAAAGAGCTACCTTAACGAGTATGATGTAGATCATACGTTCATCTAAATATCGATCTTCCATACCCACATTCTCCAACTAAAACATCGCAATCCAATAAAGAGTACCCTCTATGAACTCATATAAAAGTGCGAACACCAAGCTCACATCCAATCCCCAGCAGATTCGCACCCCTTGCTACATAAGGGCTTATAGGAATTTTATTGTCTTTTCCCACTATTTTCAGTAGTCTAAAAAAGAGGTTCGCGATTTTGTGGCATTTTTTCCTTGCTACATCAGGGCTAAAAGCAGGTACA # Right flank : TAGATCGTGAAGAGTATATTTACCGATTTCTTTATGTCGTCACTCTCCATGCACATTATTGGTAGTAAGCACAGAACGCAGGGAAGGAAATAAGGGGAAAGGACTCCTTTGGAGGGGCGGGAATCTTCATGTATTCCAAATTCCAAAAGATTCCCGCGGCTCCACCCGAGTCCGTCCCCTTATTCCTTCCCGAAGTGGTGTACCTCACCACCCTCCAAAAATGTCATCCCCAACCTACACACATCCAATCCCCACCATTACGATCCACGCACGATCCGCAACGCACATTGTACATTCCCACCAAAGTCATGAAGCATTCGAACACCAGATCACATTTTCATCCCGTAAGCGCTTCCCACAAAAAACATCGCTATTTTCCACTCACAACACCAATTAAAGTTGTTTTACCCCTTGATCTTTTAGACAATTATCGCTATCATTTCAGATGTGTCGATATTGGTTTGTGACAGAAAACGAACATTTTCTTGAAAAAAAACAAA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCCGTGCGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //