Array 1 148892-148066 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000002.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 148891 29 100.0 37 ............................. AATATACTCATGCTTTAAATTTAGCTCCAAAAACCTC 148825 29 100.0 36 ............................. CAAAAAGCACTTCTTTCATCTCACCTACCTCCTTTT 148760 29 100.0 38 ............................. TAGTTTTAGCTCTAAGAACTGTTCCCTTGTAATCCTTG 148693 29 100.0 37 ............................. ACTATACGAACAGGTTTTAGATACTGCTTATCAATAT 148627 29 100.0 36 ............................. TGTCTTTCAAGGATTAGAAAATTTCGTAAGGGGGTT 148562 29 100.0 37 ............................. GTTCTTTTGTGATGATGATGCGCTTGTGAATTGAATG 148496 29 100.0 40 ............................. CCAGAATATTGACTATGGCTCCAAGCTTTGAGTATTGATT 148427 29 100.0 37 ............................. TAGAGAGGATTGAACCTAAAAGATACCTCTGGATAGT 148361 29 100.0 40 ............................. TTGCGAAGACGCTCTCGGTTGGGTCTATAGGGTCTTCCAT 148292 29 100.0 36 ............................. TTTCAAAAGCCATACCAGAGTTTAGCAGGTTTGAGC 148227 29 100.0 36 ............................. TACACTCAAACACATAAAACTTTCTTTTTCTCTTTG 148162 29 100.0 39 ............................. TGGTCTTCCAGCTCCAGCTCCTTTTCAAACCTTACCTGT 148094 29 93.1 0 ................A.......A.... | ========== ====== ====== ====== ============================= ======================================== ================== 13 29 99.5 38 GTTTCTAATGTACCGTGTGGAATTGAAAG # Left flank : ATCTGTATGCTTTTAGCATTTTTCTTTACCTTGATTTTATTTTCTATTCCCATAAATATTATATACCGAAACCTATTTTTATCAGTAAGCAATTCATCTCCGACTTTAGAAGATTCCAGACTTCTTGCTGGAAGTGTTAAAGCTAAAACCAACAACACACTTTATGATATATATCATAAGCAATTTCTCTCTCTAAGGATTAAAATCAAAAAAAGGATTGAGGGGTTTTATAAGCCCCTTGTCATCTTGACAGTTGAATAAGGACTGTGTTTGTAAGATTATAGGGGTAGTATACCTTTGATGTCTTCATCAAAACATTTTGGTGTTTTGATGTTTTGATGAGGTACTTTTGGAACTGTTGAGTTTCAATAGTTAGAAATGGCAATTTTTCAGCCCCTTTTTGGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAAAGGGTACCCCTTTTAGCAAAGTGTTGATGTATAATGTTTTTCTTGAATATCTCTTTTGGG # Right flank : GCAAATAGGGTTATAATAAAAGTTTTAATGAAAAAGGTTCTTATTCTTGGGAGTGGTCCTAATCGCATTGGTCAGGGTATAGAGTTTGATTACGCATGCGTGCATGCTATATACGCTTTGCGTGAGGAGGGTATAGAAACCATTATGATAAACTGCAATCCAGAAACGGTATCCACAGACTACGATACTGCGGACAAGCTATACTTTGAACCTATTGTTCTTGAAAATGTGCTTGAGGTGATCAGAAGAGAAAAGCCTGATGGCGTGTTTCTACAGTTTGGTGGGCAAACACCACTAAAACTTTCCCTTCCCCTCAAAAAAGCAAATATCAACATACTGGGCATACAGCCAGAGAGCATAGACATAGCAGAAGACAGGGAACTTTTTAAACAGCTTATAGACAGACTGGGTATAAAACAGCCACCGAGCTCTGCGGTAAGGTCAAAGCAAGAAGCACTAAAGGTAGCAGAAAGCATAGGATACCCTGTTTTGGTAAGACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 59154-57720 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000003.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 59153 29 100.0 36 ............................. TGATCCTTTGCCCCCATGCAGACAGGCATGGGATAC 59088 29 100.0 36 ............................. GTTAGCTGTTGAGCAGGAGCACCGTTTTTTATCACC 59023 29 100.0 44 ............................. ATCTTTATGGGAAAAACATTGTAGATGGTCATTATGGACTTAAG 58950 29 100.0 36 ............................. TTGTAAGATGTTTTTAAAATAGAAACTTCTTTCACT 58885 29 100.0 36 ............................. CTATTAAGAAGGCACTTTTATAAGCTTAAAGTGTGC 58820 29 100.0 40 ............................. TGAAGAAAAGCTTTACTGCAAGCCATTAGACCTGTTATAT 58751 29 100.0 36 ............................. GCCAAGCTTACGCATCTTTCTCAAAAAAGTACTCTC 58686 29 100.0 36 ............................. CTTACAGTCCTCTCAATGTCTTCTTCAGAAGTAGGA 58621 29 100.0 37 ............................. GTCTGATACCATCTTCTTCATAGCTTACCTCCAGCGG 58555 29 100.0 42 ............................. AGAAACCTGCTTAATGCCCCCTTAAAACGCTCCTTTACCTCA 58484 29 100.0 40 ............................. TGAAGAAAAGCTTTACTGCAAGCCATTAGACCTGTTATAT 58415 29 100.0 36 ............................. TCTATAAGCTTGAGAAGGGCAGGGCAAAGCTCATAT 58350 29 100.0 37 ............................. GCTGGACCAAACAAAAATAAATGCCTCCCGAGGCTTA 58284 29 100.0 37 ............................. TTGGAATTAGTCCTATATACCTGCTATCGTATGAGTT 58218 29 100.0 38 ............................. CTTTTTTCAGTAGCTCCTCTCTTACCTTTTCTGCTTTA 58151 29 100.0 38 ............................. GAGGATATTCTTTACATGGAGGTAAGGAAAAAGCAAGA 58084 29 100.0 37 ............................. TCTCATAGGATATAGTGCCTCTAAACTCTTCTTCTCC 58018 29 96.6 36 .........C................... TCTTTTGCTTCTGCTCTCATGAAATTAATTATCCTC 57953 29 96.6 38 .........C................... AAGGGGAGTAAGGAAATGGCAGAGAGAAGGCTACGCAC 57886 29 96.6 40 .........C................... TGTTGCAAAAGGTTATTACAATGCTTCGGAGGGCAAGTGG 57817 29 96.6 40 .........C................... TGATGTTTGATAATGAGCAAAGAACTATACGCATTTGAAG 57748 29 89.7 0 .........C.T.....G........... | ========== ====== ====== ====== ============================= ============================================ ================== 22 29 98.9 38 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : GTTAGGATAAAGTTCAGAGGAAGGGAAAACATACACCCCGAATTAGGAGACAGACTAGTGCAGAGGATCTTGGAAGACCTATCAGATATAGGACAGATAGAATCAGAACCAAAGAAAGAAGGAGCTTTCTTGATGTTTTCCTTGATACCTAAGAAGAGGTGATTTGTCCTCTTGATTTTTCTTATTACATGCATTAAAATTAACTACCAAGTTTTACTGAGGGTCAGAAAACTGACCCTTGTTATCTTGGCAGTTGAATAGGGTTTGTGTTTGTAAGATAAGAGGGGGTGATATAGCTTTAATACCTTCATCAAAACATTTTGGCATTTTGATGTTTTGATGAGGCACTTCTGGAATAATTGAGTTTCAATAGTTAGGAATGGTAATTTTTCAGCCCATTTTTAGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAGAGGGTACCCCTTTTAGCAAAGTGTTGATGTATAATGTTTTTCTAAAATACCCTTTTGGG # Right flank : AAGAGGATAATTATAATTCATCATTCTAGTCTGAAGTTTACGGGAAGTTTTATCAGGACCTCCACAGGTGGTTTTGGGAAAAGGTGAGCGCTTCTGCTTACCGCTTCAAGAGCGCTCCTATCAAGAATCTCATAACCCGAGCTTTCAAGCACATGAAGGTCCTCAAGTCTTCCATCAGGTGTTAGCCTAAAGCACACCACCACTCTTCCTTCCCAGCCCATCTTGCGAGCAAGCAAAGGGTATGTTATGCTCTTCTGTACCAAAGAGGATATAACCGATAGTTTTTCCTTAAGAAAAAGCTCCTTCTGAACATTAGATGTTGAAGAAGTGTCCCCACCGCCTGATCCTGCTTCTGCCTTTTTGTTTGATGGTTGAGAGCCTTCTGTGTGCGAGTCTGTGCCTCCTCTTTGATCCTTTCCCTGTGAGATGTTTGTTGTAGGAATAACTTGATTCTGTTCTTGAGCTGACCGCATAGGAGCTTCATGGACCTGGGATGTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 21000-21775 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000006.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 21000 29 100.0 38 ............................. AAATATTCTCTTAATTTTTTATACAGCAGTATATAAGT 21067 29 100.0 37 ............................. GATCCTGCACTATCTTGGGAAGCTCCTTGAGCGTTAT 21133 29 100.0 37 ............................. TTCTTGATGAGAAAGTATCCCAATAGCCCTGCGGTAT 21199 29 100.0 36 ............................. AAAAACAACCAGACATAAAAGAGCTTCTGGCTCAGG 21264 29 100.0 38 ............................. TTTCTTTTCCACCTCTTTTTTGATCGCTTCTATGAGAC 21331 29 100.0 51 ............................. CGGGAATTAGCACTTCCAGATATCTTAGTGTTGCCTAATATGATTCCCAGT 21411 29 100.0 39 ............................. AGTGATGAGATAGTCCTTGCTTTCAAAGTATCCATCTTT 21479 29 100.0 37 ............................. GTTCAAGAAGTCCCTCAAGAAGCTTTTTCCTTGCGGA 21545 29 100.0 37 ............................. AAGGACTTGCCACACTTTCTAAGACTTGCAAGGGATT 21611 29 96.6 38 .........C................... TCTTCTTCAACGAGAATTCTATTCTCGTGAGCAAACAA 21678 29 96.6 40 .....................A....... TTTAATATCCTTATTGCTTGGTTCTTCCCAGTCAAAAACA 21747 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= =================================================== ================== 12 29 99.1 39 GTTTCTAATGTACCGTGTGGAGTTGAAAG # Left flank : ATGTTAAGACTCTCCAGTCCTTTCTCCTGTTTGCAGGCTACCTCACAAGACAAGCAACCTATACACCTATCTAAATCTATAATCATTACCGGCTTTTTACCCATAACTTGAATAAATTATACGCCCAGCCAAGAAATTAAAGCTAAAACCAACAACACACTTTATGATCTATATCATAAGCAATTTCTCTCTCTAAGGGTTAAAATAAAAAAAAGGATTGAGGGGTTTTATAAGCCCCTTGTCATCTTGACAGTTGAATAAGGACTGTGTTTGTAAGATAAGAGGGGTGATATGGCTTTAATACCTTCATCAAAACATTTTGGTGTTTTGATGTTTTGATGAGGCATTTCTGGAATAATTGAGTTTCAATAGTTAGAAATGGCAATTTTTCAGCCTCTTTTTGGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAGAGGGTACCCCTTTTAGCAAAGTGTTGATGTACAATGTTTTTCTTGAATATCCCTTTTGGG # Right flank : GGTATTAAATTTAATGCTATGAGTAAGAATAAAGAGATAGCACGGATTTTTGAAAAGATGGCTGATATTCTTGAATTTCTTGGTGATAATCCCTATAGGATAGCTACATACAGACGGGTTGCTAACATTCTTTCGGAGCTTAATGTAGATGTTGAGGAACTTGTAAAAAGCGGAAAGATATACAACATACCCGGCATAGGACAGTCAAGCGTAGAAAAGATACTGGAATATCTCAAAAAGGGAAAAATATCTAAATACGAAGAGTTAAAGGCTAAAGTACCAGAAGACCTTCTTGAACTTATGGATGTTCCAAACATAGGACCGAAGACTCTAAGGTTAGCTTACGAAAAGCTTGGGATAAGAAGTAAAGATGACTTTTTAAGAGCGGTGCGTAGTGGTATGTTAGCTACGCTACCAGGTTTTGGTGAGAAGAAGCTTCAGAACATAATGAGAGGTATAGAGTTGTGGGAAAAAAGTAAAGAAAGAATGACCTTAATAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 49104-49882 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000010.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 49104 29 100.0 37 ............................. CCCACCAGCTCATTGTTATACACTGTGAGAATGTATA 49170 29 100.0 37 ............................. AAGGTCGTGTGGGCAAATTCCAAGAGTATCTGGCTGA 49236 29 100.0 37 ............................. TCTTGCGAGGGTTGTTGCCCTCATTCTTTACAAGTAT 49302 29 100.0 37 ............................. TCATGCTTTTGATCTCTATGATATAAATGTTGTCTTT 49368 29 100.0 37 ............................. CAGAACCTGCAATCCCTTGCAAGTCCTCAAGCAATCT 49434 29 100.0 36 ............................. CGGGATCAAAGCTAAGGAAGTCAGTTCCATAATCAT 49499 29 100.0 37 ............................. AGGAAATATCTTTTCATGGCTTTGGACGAACTCGTAG 49565 29 100.0 36 ............................. TTCTAAAGCTTGCTCTTTTTCTCTTTGTTTTTGTTC 49630 29 100.0 39 ............................. TCCTTTGCAAGAAGGTACCCTTTCTCAACAAACTTTTCA 49698 29 100.0 36 ............................. GACATCTCTCAAACCTACTGGGTAAGCACTATAGGA 49763 29 100.0 61 ............................. CTGGAACACCATGTTAATTTTCTTAAGCAATTCTCGGGTTTTTAGCCCACTGGGTGGGATT 49853 29 75.9 0 .GGA..T..C..T.....A.......... | T [49871] ========== ====== ====== ====== ============================= ============================================================= ================== 12 29 98.0 39 GTTTCTAATGTACCGTGTGGAATTGAAAG # Left flank : TCTTTAAGTTCCCTTATCTTCTTAGCTATTAGGTCTCCCATGGTGATTTTTTTGTCTATGCTTTCTACCCTAAGCTCTCTCCATACATCCTCAGGCAAGGATACAGTTGTTCTTACATACTTTTTTGAAGTCTTCTCCTTCCTTTTCTTCATAGATAAAAATTATACTCTTGCCAGAAGGAGAAAGTGTGATATAATAATAAGCGTTTGGGAAACTGAGGGTCAGAAAACTGACCCTTGTTATCTTGGCAGTTGAATAGGGTTTGTGTTTGTAAGATAAGAGGGGGGTGATATAGCTTTAATACCTTCATCAAAACATTTTGGCATTTTGATGTTTTGATGAGGTACTTTTGGAACTGTTGAGTTTCAATAGTTAGAAATGGTAATTTTTCAGCCCATTTTTAGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAAAGGGTACCCCTTTTAGCAAAGTGTTGATGTACAATGTTTTTCTTGAATATCCCTTTTGGG # Right flank : GAAGCAGTTATCCCAGAATAAGAAAATCTTATAGCAGGGAAAATAAGGGAGGATAAATTAAATCCATCATTAAAAGTGGGAGGTAAAAGTATGAGGAAAACTCTGTTTGCTCTTTTAGGAATTGTGGGAGGTTCTTTTGCTGTGCCTGTGTTTATGGATGGGGAGTACGCAAAGGCGCTTTGTAATGAGTGGAACAAGACTCCTCAGCTTGTTGACAATCTTGGTAAAAGTGAAAGCTGGGTTGCTGTTCCGGAGAGAAAAATATTTATCTACAGAGAGGATTGTGGAGATTCCAAGCAGATACAACTAACCATAAAGAACGAGCAAGGTAAAGCCATGTGTGTGTATGGTGGTCCTGCCAAAGACAAACGCGGACCTAATGACTTTCTTATGTATGCAGAAACCAAAAGATGGTTAGAGATGGGGAAAAAAGAGTATGGACCCATGAAGGCTATGATGTTAGGAAGGCTCAAATTTGAAGGTCCTAAGTTTGTAGCTAT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 56189-55767 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000004.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 56188 29 100.0 37 ............................. CCTTACTACAAGCTAAGAGTTTATGGCACTCCTGAAG 56122 29 100.0 36 ............................. GTAGACAATGCAGGATTAAGTGTAGTAGTGCCTACA 56057 29 100.0 37 ............................. GTATGTGTTCTCTTTCAATCATGAGAATCTCTTTTTT 55991 29 100.0 35 ............................. TATTGTGAAAGATACTTCACTATAGCCCTTTGCAC 55927 29 100.0 37 ............................. ATTAGACTTTTAATCCACATACTCGCTATGTTTTTGT 55861 29 100.0 37 ............................. CTCTTGTAATCTTAGGTGGTGCAGGTCTTCCAAAAGA 55795 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 37 GTTTCTAATGTACCGTGTGGAATTGAAAG # Left flank : TTTTCACTAGCCTTATGGTATCCCTGCTTTTTGGTATGACCGCTTGCTTTACGGTTGCAGTGCAAGAAAACAAAAAACAACACAACGCAAGTATTCCTATCCCCCTCTTCATTAAAAGTTAATTATAAAATCTTTTGCGGACAAATAGTATCCTTCACACACTTTATGATATATATCATAAGCAATTTCTCTCTCTAAGGGTTAAAATAAAAAAAGGATTGAGTGGTTTTATAAGCCCCTTGTCATCTTGACAGTTGAATAAGGACTGTGTTTGTAAGATAAGAGGGGTAGTATACCTTTGATGTCTTCATCAAAACATTTTGGCATTTTGATGTTTTGATGAGGTACTTTTGGAACTGTTGAGTTTCAATAGTTAGGAATGGTAATTTTTCAGCCTCTTTTTGGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAAAGGGTACCCTTTTAGCAAAGTGTTGATGTATAATGTTTTTCTTGAATATCCCTTTTGGG # Right flank : GTGGGTTATAATAAGTCCATATGTTCAAGATTCTTTCTAAGGAAATTTTAGGTGAAAGATTTTTGCTCTTAAGGATTTATGCTCCTCACATATCGGATGCAAAAGCAGGACAGTTTGTCATATTACAGCTCAAAGAAGATTCGGAAAGAATACCTGTATTTGTTTTGGAAACTTTTCAAGATGGTTTTTCTTGCATACTGGAAATAGTAGGAAGGAGTACTCTTGAGATAAAAGAAGAAGGAGAGGAATTTTATTATGTAGGTGGTCCTTTGGGGAAACCTTTTCCTGCTAATTACTACGGAAAGGTAGTTTTATATTCAAAAAATTGGGGTGTTGCAGGTGCAATAAGCGTAGGGAGAGCTCTAAAGGAGATGGGAAACCACATCACTCTGGTTTATTTTGAGGAAGTTTTCACTGATATTTTAAAAAAAGAAAAATTTGATGAAGTTATCTTAGAGAAAGATTTAAAGGCTTACAAAGGTGTTGATCTTGTAATAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 70799-71443 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000004.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 70799 29 100.0 40 ............................. ACTTGTGCGGGTGTGGGTTCTATACGGACGGGAGTATTGT 70868 29 100.0 37 ............................. ATAACTGTTATCAATGATGTAGTGGTTCTTTCTTGAG 70934 29 100.0 37 ............................. CGCTGTCTTTCCTAAACAATGCCTTGCGGGTATATCG 71000 29 100.0 37 ............................. GGAGCAAGCAAAACTTGTTCGCCTTCGCTAGAAACAA 71066 29 100.0 45 ............................. TGAGATCAACCCCTCGTATGGAGAGGTTTCAGCGGCGATCTTAAT 71140 29 96.6 43 .............T............... GTGCTCGGAGAGTACTTGTATATTTTGATCTCGTTCGTTGCAA 71212 29 100.0 38 ............................. AAAGAGTTCATGAAGTCTAAGACAAAGAGTTTAAAGCT 71279 29 96.6 39 .............T............... CATGATTCGTCTGTTGCTTCTTCAAAGAATAGCCACTGC 71347 29 96.6 39 .............T............... ATCCTTAACTAAGATGCACTCTCCAGACGGGAAAAGGTT 71415 29 86.2 0 .............T..........TG..T | ========== ====== ====== ====== ============================= ============================================= ================== 10 29 97.6 40 GTTTTTAGCCCACCGTGTGGGATTGAGAC # Left flank : CTGGAACTTCATTCCACAAACCACACAATAGGAAGCAACATAACCTTTAGGGGCTTTTTGGGTATAGTGTGCTACACCACAGAAGACCCAGAGCTTGCCAAAACCCTCTCTGTGCTTGCACGCTTTGCAGAGTATGCAGGAGTAGGACAAAAAACCACCATGGACATGGGTATGGTAAAGTTGCACCGTATGTAAAAATGTGTTATACTTTTAGAAAACTGAGGGGTCATATGATCCCTTGTTATATTGGCAACTGAATAAGGTTTAGGTTTGTAAGATTATAGGAGCACTATAGCTTTAATACCTTCATCAAAACACTTTGGCATTTTGATGTTTTGATGAGGTACTTTTGGAATGGTTGGGTTTGAATGCTTAGAAATGGCACTTTTTTAGCCCATTTTTGGGAACTGAAAATTTCCGAAAATTAACTTCATTTAAAGAGGGTAGCCCATTGACAAAAAGCTTAAGAGAGAATAAGATCAAACATATAAGGATTTGGG # Right flank : TACCTTTTGAATTGAAAGGACAAGGAAAGTTTGAATTATGATAAAATACCTTTTATGGCTGTCAGAATAGATATAAACAGCATACAAAGGGATATGTTTATTGAACATGCAGGTCAGCCTTATAGGGTTATTGACTACGAGCATGTGAAACCCGGCAAGGGTCAGGCTTTTGTCAGGATAAAAGCCAAAAACATGCAGACAGGAAATGTGATAGAACTAACCTATAAGTCCTCTGATACCATTGAGCTTGCGGATTTTGAACAGGTCTTTGCAGAATACTCTTACAATGACGGTAGCAATTACTACTTTATAAGTCAGCAAACTTACGAAATGATACCCATTCCCGCAGAAAACATAAAAGAAGAGATAAAGTTTCTAAAAGAAGGTATGACAGTGGTTGTATTTCTTTACAAAGGACAACCTGTAGGTATAGAACTGCCCAAACATGTAGAACTAAAAGTTATTGAAACAGAGCCAGCTTTTAAGGGAGATACTGCAGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCCACCGTGTGGGATTGAGAC # Alternate repeat : GTTTTTAGCCCACTGTGTGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 372155-372379 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000001.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 372155 30 96.7 35 G............................. AAGTTTTTAGATGTTTATCTCAGACCACTTTTTCC 372220 30 100.0 35 .............................. ATGGATATAACGGAACTGATAGCAAAAGTTTTGGG 372285 30 100.0 35 .............................. GCTCTGTCTTTGTAGCGAGAGAAAATCATGTTGTA 372350 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 4 30 99.2 35 TGTTTCTAATGTACCGTGTGGAATTGAAAG # Left flank : TTTTAACTGAAGGAAAGCAGAAATATCCTCACCTTCTGGCAGGTCCTCCACCTCAAGTATTCTTTTAAGAAAATCCTTCTGCTGGTTTGTAAGCTCCCTTATCTTCATCAGTAAAAAATTATACACATACAAAAACATAGCCAATAAATTTATATACATAATTATGATCTATATCATAAGCAATTTCTCTCTCTAAGGGTTAAAATCAAAAAAAAGGATTGAGGGGTTTTATAAGCCCCTTGTCATCTTGACAGTTGAATAAGGACTTGTATTTGTAAGATTATAGGGGTGATATACCTTAGATACCTTCATCAAAACATTTTGGTGTTTTGATGTTTTGATGAGGCGCTTTTGGGATAATTGAGTTTCAATGGTTAGAAATGGCAACTTTTCAGCCCCTTTTTGGGAACTGAAGATTTCCGAAAATTAACTTCATTTGAAAAGGGTACCCCTTTTAGCAAAGTGTTGATGTATAATGTTTTTCTAAAATACCCTTTTGG # Right flank : GTGGGGAATTGAAAAGAGTAGAGTTGACATGAAAGAAAGGTTAAAAGAGTAAAAGCTCAAGTAGGTCTTCTACATGAACGCCTGGCATGTCTGCCTTCTTTAAAAACTCTTCTATCTTATATCTTACTTGGTCTAAACTTGCACCCTTTAACTCTTTCTCAAGATCCTTGATGGCATTTTTCGGCACAAGAGTGAAATCTCCGTATATGCTAACATCTTCTATTATATTTTCTTTGATGTAAACTTCTGCTTTTATTAATCCGCCTTTCACTTTCTTAACTGCATTTTTTACATAAACTCCCTCTCTTATCTTTAAAAATTTGTGCTTTCTGCCCGTATCTTCAAAAAGAACATTTTCTGAGGTTAGATGTTGCATCAGCTCATCCGCAAGGTGCAAAACTTGGTTGTTTATTTCTCCTTCGCCTTCAAATTCTATAAGCTTGGAAAACTCTTCTACCAGTATGTTTTCCACCTCTTGGTAGGAAAAGCTTTTATGTGTT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCTAATGTACCGTGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 2655-2071 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000011.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 2654 30 100.0 37 .............................. TATTTCTTGAGATCAAAGAATAGTTGTGGGTACTGAT 2587 30 100.0 37 .............................. CAATGTTTTCTGGATGTACATACCTCAGCATGGCTAC 2520 30 100.0 37 .............................. CCTATAACTGAGAAGGGAAAGCCTTTTACAATGCCAA 2453 30 100.0 47 .............................. CTCTCTCCTATCTTGATAGTGCATGCCATAGATACAACTATCATCTC 2376 30 100.0 41 .............................. TATAACCTTCCGCTTCTGCTCGCATAGATTATCAGTGTTTC 2305 30 100.0 37 .............................. CTTTCTAAAACCTCATGCACAATCTTATACACTTTAG 2238 30 100.0 37 .............................. AATGCACATGAGTATCTAACAGTGCATTGGACAAAGA 2171 30 93.3 41 ..............C...........A... AGCATGTAGTCCTTGAGACTGGACTTGAGTACTTGGCTTAA 2100 30 83.3 0 ....G.A...................TT.T | ========== ====== ====== ====== ============================== =============================================== ================== 9 30 97.4 39 GTTTTTTAGCCCACTGTGTGGGATTGCGAC # Left flank : AAAGTATTGACATAGCACACACCACACCTCTGCAAGCTCTTATGATACTTTCCGAACTCAAGGAAAGAGTAAAGACATTAAAGGAAAGTCTCATATAGTAGTGAAGCTGTTTGAAAAGTAGCAAAAGATCTCCCTACGATGAAGACCTGCTACAAAGAGTTTCTTTATACTCTTGCATTTTCTCGTAAAGTGTGGTAGATTATCTACCAAGCTGGAACTGAGGGTCAGGAAACTGACCCTTGTTATCTTGACAACTGAATAGGGTTTGTGTTTGTAGGAGAAGAGGGCTATATAGCTTTTATGTGTGCATCAAAACACTTTGGCATTTTGATGTTTTGATGAGGTACTTTGGGGATAATTGAGTTCCAATACTTATAAGTTGTACTTTTTTAGCCCATTTTTGGGAACTGAAAATTTCCGAAAATTAACTTCATTTAAAGAGGGTAGCCCTCTGGTGAAATGCTTGAGAGAGAATGAGATCAAGCATGTAAGGATTTGGG # Right flank : TCCTAAAATATCCATTAACAAAGCTTCTTAAACTTGGTTTTCTCCAAGTCCTCATGGATAGGAGGTTTTAGATCCTGCAGGGTAAATAAAAAACAGAGCAATTTAGTTCTGTTTGAAAGGTTATGCCTTGTTTTTCTGAACTTAGACTTCGGAAAAAGCTCTTAAATTTATAAATACTATGGAGCTCATAAGAAACTTCTCCATAATAGCGCATGTAGATCATGGCAAATCTACCCTTGCGGACAGACTTCTTGAATACACTGGGAGCGTCTCAAGGCGAGAGCTAAAAGATCAGATGTTAGACACCTTAGAGATAGAAAGGGAAAGAGGTATAACCATTAAACTTCAGGCGGTTAAGATGTTCTACAGGGCAGAAGATGGAAATACTTATACTCTACACCTTATAGACACACCGGGACACGTGGATTTCTCTTATGAGGTTTCAAGGGCTCTTGCTGCGTGTGAAGGGGCTATACTCTTAGTAGATGCAACGCAAGGAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTAGCCCACTGTGTGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 59679-60309 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000008.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 59679 29 100.0 38 ............................. TAAACCACTGAAAAGTTGGGATCAGTCATTCTACTAAA 59746 29 100.0 37 ............................. AACCAGAGGTCTCCTTTGATGTTGTACTTTGTAGCAA 59812 29 100.0 37 ............................. GAGGAAGAGTATGACAAGTTTTTAAGGTCCGCAAGGA 59878 29 100.0 38 ............................. TGAAGAAGGAAGGAAAAGATGGAAGTATCTTGGTCCTA 59945 29 100.0 38 ............................. ACCGTTGCATTTGTCCCTTGTCTAAGCTTCTCATAATG 60012 29 96.6 39 ............T................ CACATATAGAAAATTCCTTGAAGCGTTTGAAAAAAGCCG 60080 29 100.0 39 ............................. GCTTTCTCGTTCCAAAAAGTGAGATACCCCCTCTTTTTG 60148 29 100.0 37 ............................. CCTCATCTTTCTGTAGTCCTGCCCTGAATTCTCTCAG 60214 29 96.6 38 ..........G.................. ACCCACTCCTTCATGCCTACCCAGTAGAGAGGACTGAG 60281 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 99.0 38 TTTATTAAGTACCTATAAGGAGTTGAAAC # Left flank : CCTTCAGACCTGAAAAGGCCTGTGGATAGAAGAATACTTTTTATCTCCTCAGGCTTAGGAAATACCAAGTCTATATCCCCAGAAACGTAATAACCAAAAGTATAGAGTTCTACTGCACTACCACCTACTAAAATAGGAAACTTTTTTATTCCTTTCTCTTTTAGCTTTCTGTTGAGCCAAGCCATAAATAAGAGTATTTTCTTTAGTTCATTTTCTTCATATTTTATCTTTTCAAGAATTTCCTCTGTCATTGGGTTTAATATAGTTCTTTTCTATATCCGTCCCATGTGAAAGAAAGCTACTGAGAGAGATTTTATTAAGGGATACGCCTTTCAGAGCTTTTGAAGGCTATGTTAAGAAATCACCTTTATATCAATGTTCTAAGATTTTTCAAACAGCCTCTTTTCCACTTGACACACACATGAGTTTTGTGTATATTATTAACATAGCCATATGGCTGTAGAACTTGACAACTGAATATGTTTTGCGATCCTTTGGGA # Right flank : TTGCGTTATTATGTATGATGCCTTAGAGTGTTTAAACTTACTAAAAGCCTCGTATCTGTATTGCCATGCCAGAAGAGATAAAGAAAGTTCCCTTGAGGTAGACATTGAGATAAGAAGAAAGAGACAAGTTTGTAAAAACTGAATAGCCATAAGTAAAGCACAAACTTACCTACTTCCAAGGTATGTTAACTAACATCTTTCATACTTCTTATTGTATTGGTTAAAACTCAAAAAGTCTAAGAACCTCTTCCAGTTTTCTGGCTACCTCTTCCTTTAAGTGTTCTATCTTAGTAAGCTCTTCAAGAATAGGGGATACATCATGTAAGGCTTTTGTGTTTATTCGTTCCACTCTTCCTAAGCACTTCCACTTGGTTTTTCCTTGTTCCCTCCACCATGTATAGACATAGCTATAGCCTTTTATATGCTTTATCGTGTAGCCTTTACGATGGAGTATTCGGTTTAGCTTTCTTTCTCTTTTCTCTAACTCCTTCAGAGCGGAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTAAGTACCTATAAGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 64219-63785 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBEN01000008.1 Hydrogenobacter hydrogenophilus strain DSM 2913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 64218 30 96.7 37 ...........G.................. ACTGACTTGGATCTGTGGTCAGAAAAGGATAGATGCT 64151 30 96.7 38 ...........G.................. GCGGATATTCCTATAATCTGCATGCTTTCTGGAACCGG 64083 30 100.0 37 .............................. TCAGTAGCCCACGCATGATAGTTTTTCCAGAGTGAAA 64016 30 100.0 37 .............................. GCTACCACACCACTGTGAAAGACATTGAGCGTGTATG 63949 30 100.0 38 .............................. TGCTTCCCACAAGAGAAACCGTTGAGGACACCTTTCCA 63881 30 100.0 37 .............................. TCGTTCTTCCTGCTCAGGAATGGAGAAAATGGTTGTA 63814 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.6 38 GTTTATTAAGTACCTATAAGGAGTTGAAAC # Left flank : AGGTGTTTTATGAAATTCTATGAAGATTTTCCTATAAATGGAACTATCTTACATGGGTGCAAAACTCTGTTTTTGAGGGAGAAATAACAGAAGCAAAATTAAGAATTTTGAAAGATGAACTTAAGAAAATTATAGATGATAATTACGATTCTGTATTGATATACAAGTTTAGGACAAAGCAGTATTACGAAAGAGAAGCGTTAGGCATAGAAAAACCTTCTCATGAAGATTTTATAATTTAACAAACCTTTGTTTTTCAAGCGTTCTGTCGATCCTCACTTTTGGCAATCTTTAATTTATCTTTTTATGCCGAATTTTTTTAAAAAATCGCATCTAAACGAAGAATGACAAGCATCTGTCCATCTCCGGGGTTTTTTGTGAGATTGGAGGTCGACAGGAAATTTTTTTCACTTGACACACACATGAGTTTTGTGTATATTATTAGCATAGCCATATGGCTGTAGAACTTGACAACTGAATATGTTTTGCGATCCTTTGGG # Right flank : TCTTGAGCATAGTCAAAAGAAGGGTTTTCAACATTTTACTCCAAAAACTCCTTAATACTTTCCAAGCTCCTTAATCCACCGCTACTTTGATTACTTCTCTCTTCTTGGTTAATCCGCTTTTTATCTTGGTATTCTCTTTTAACTGCCCTCTTTTCCCAGATTTCCTCTACCTTCTCTGTAAAACCTTTGTAGTCTCTTGCTATGACACATTTATATAGTTCCTTCCACTCTTCTTCACTGATGCTACCTAAAAAGTCCTGCAGTAAGAACTCTAATAGTTTTCCTTTCATGCGAGGAGTCAAGACTGAAAACCTTTCAAGAGCAGGCTCTTGTAGATCTATTAAGTGCCTGAGAAGTACCTTCATGGTTCAAACCTTGAATAGCCTCTTGCATTGGAGTATTCAGGTTTATTAGGAATAAGGGCATCTTTTCCAAACAGACTGGCTTCTATCAGGTTAGCTCCACCACCTGCTAATACAAGCTTATCTCTCTCCTCTACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTAAGTACCTATAAGGAGTTGAAAC # Alternate repeat : GTTTATTAAGTGCCTATAAGGAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //