Array 1 178372-176570 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJBB01000007.1 Klebsiella aerogenes strain PX01 NODE_1_length_768701_cov_81.1494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178371 29 100.0 32 ............................. GCAACTTCTCTTTATCGACTCCGTCAGCTTAC 178310 29 100.0 32 ............................. CCGCGTGGCCGCGATGGGGTGAATAACCAGAA 178249 29 100.0 32 ............................. TAATGACCTGCTGACTGCAATTGCGCTGGGCA 178188 29 100.0 32 ............................. TTGAGGCCTCACCGGGTGAAATTCAGGTATTG 178127 29 100.0 32 ............................. TGAATACTGGCGAACTGGTGCTGGTCGATACG 178066 29 100.0 32 ............................. CGCCGGGCTGATTTGCCCGGAAAGAACGGCGG 178005 29 100.0 32 ............................. TAACGGTAAATACGGCCCTGAATCCAGTGTGG 177944 29 100.0 32 ............................. TTCATTAAGCGTGTCAGCAATGACTATCTAAT 177883 29 100.0 32 ............................. GCTGTGCTGCAGGTTATTTTGTATATGTTACA 177822 29 100.0 32 ............................. TGTCGATAGCCATCAAAAGTGGTATAACCTTG 177761 29 100.0 32 ............................. GGGTATGCCCGCGCCACGGTGAGATTGTTATG 177700 29 100.0 33 ............................. CCAATAGCGCATTATTACCAGAATATCGCAAAC 177638 29 100.0 32 ............................. GCGGAGTGGCTGGAAACGGTTGTCCGGCCTGA 177577 29 100.0 32 ............................. GCCTATATGAGTGACCGCGACGGGTCTGTTCG 177516 29 100.0 32 ............................. GTTACGTAGGCGCGCTGCTCAATCAGCCTGAT 177455 29 100.0 32 ............................. GGCTTAAGAGGAAAGAGATAACGTCATATACT 177394 29 96.6 32 ............................A TACAGACGCGGCAACCAATGCGCTGACCTGGC 177333 29 100.0 32 ............................. GTGTGGTAATTATTGAGACGTGCTACGCCAAA 177272 29 100.0 32 ............................. AGTGATTCTCGTGCACTATCAAAGCGTCTGGA 177211 29 100.0 33 ............................. TTATTCAGGAATTCTATTGTGTCTTTTGCTTGC 177149 29 100.0 32 ............................. AGACAGCCAATAAATGGCTGCCGCAGCTGATG 177088 29 100.0 33 ............................. TTCGGCAACGAGCGCAACGACTATCTGATCAGC 177026 29 100.0 32 ............................. ATATGCAGGATATTAAAAATTTCAAACCGGCA 176965 29 96.6 33 ............................T GCGGTGGATAAAGCGCAGGTCGTCATGGGGGTC 176903 29 100.0 32 ............................. GCAGGAAAATCTACAGCCTTCCTACATAGGAC 176842 29 100.0 32 ............................. ACGCGCTACAACGTCCAGCACATCGCGATTGA 176781 29 100.0 32 ............................. CTCATTCAGTATCTCGGTCATTTTGTCGGCGG 176720 29 100.0 32 ............................. GGTAGGTAAAAACATGCCTCATAAATTATCGA 176659 29 100.0 32 ............................. TATTTCCCCTCGGTTGAGAAAGAAGTTAAGGA 176598 29 93.1 0 ............T.........C...... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCAGCGATACCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTTGCCATCTGGCTGCTGGAGGTTCGGGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATTTGGCAGCAGGTGATACAGCTTAGCGATTGCGGAAATGTGGTGATGGCCTGGGCAACGAACAGCGAATCTGGTTTTGAGTTTCAAACCTGGGGAGAGAACCGCCGCATGCCGGTAGATTTGGATGGCTTACGACTGGTGTCATTTCTTCCCATTGAAAATCAATGAGTTGAATGTTCTTTAATAATATGAAATTGTTGGAATAAAGTTGGTAGATTGTTGGTGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGA # Right flank : TAGATTTGTTTTAGGTGACGATTGCCACTTCTCATTCCCATTTCATTCTCGACTCTTTAGCTTTCCCCACTAACCTTTCGCTCAGAAAAATCCGGAGATGGGCACTGTCGGCCAAATTTCTCAGCCCAGGGGAATGGCGCCCCGTTTTTCACGTAAAGCTGGTACAGCCGCTTAACCGATTGTTGGTCGCTCGAGACCCAATTGCTGGCATTGCAAAGTATAGCGGCATAAGCCTGAGATTTTCGCGGTAGCAAACTGGCTGCTTTTTCAGCAAGTTTTGCCGCCCTCCAGCGATAATGCTCAACATTGTTGAATGGTTTGGGTCGTGAATGCTGTATGCGATATTGCTCCTCGCTACCAACCCAGGAGTGTACTCCAGAGATATTGTTTGTGGCGTCTGCGCAGGACAGGTACGTATTTGCGTCACTTAAATACTTTTGGTCAGGCTCCAAAAAATAGCTCATCAGGTTGTTGCCATGCTCGCGTAGAATGACCGCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 573060-574673 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJBB01000009.1 Klebsiella aerogenes strain PX01 NODE_3_length_611990_cov_74.303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 573060 28 100.0 33 ............................ TTGAGGTAATGGCGCAGTCTTCACAGCAAACAC 573121 28 92.9 33 ......................G.G... TTATCCTGCTGCCAGCCTAAGCGCCCGTAGTTT 573182 28 100.0 33 ............................ TAGTTTGCTCTGGCAGCATCGATTAAAAATTTT 573243 28 100.0 33 ............................ CTTATCAACCTCTATCGCTGAGGGGTCAGGCGC 573304 28 100.0 33 ............................ TATTGTCCCAACCAGCGCCCTCTTTCGGGTACA 573365 28 100.0 33 ............................ CGTAGCCAGGCTTGCTCGTACACCTCAAGACGA 573426 28 100.0 33 ............................ TTGTAGAAATTAAGACCTGCTATATCCTGTAGC 573487 28 100.0 33 ............................ TCAACATTGCTGAAAAAGCTGAACGACGGAAAT 573548 28 100.0 33 ............................ TTCCGGGTTGGTGATGATGATCATATCGGTACC 573609 28 100.0 33 ............................ CCGGGGAATCTACTGCCTGAAGGGTTGAGCCAA 573670 28 100.0 33 ............................ TAAATTTTATCGTCGCGGTCTTTGTGGTCGGGG 573731 28 100.0 33 ............................ CACACACCAGGAGAAATAAGTGTCGACTATTGG 573792 28 100.0 33 ............................ CACCGATTGATGCCGCGCCGTAAGCACGATTGA 573853 28 100.0 33 ............................ TTTATCGACTGGTCGAAAGATGCGCTGCTCACT 573914 28 100.0 33 ............................ CGACAGCCACAAGTGAATGAGGTTAATAGTGGC 573975 28 100.0 33 ............................ CGGTGAACGCGTTGCACTGCGTAGCGGTGGCGT 574036 28 100.0 33 ............................ TCCGCTTTAACAGCCAGCGACGCCAGCGCGTAT 574097 28 100.0 33 ............................ TCCTCAAGTGGTACGAGGACGGCGACAATAGCG 574158 28 100.0 33 ............................ TAATTACCGCGCCTTGCGGGACGTAGGTCTCGG 574219 28 100.0 33 ............................ TGAGCACGGGCTGACCATCAGTTTTGCTCGCAA 574280 28 100.0 33 ............................ CAATTCACTGCGCTTGATGGCAAGGTGGATGAA 574341 28 100.0 33 ............................ CGGGATTATCTCACCCTCAGAGAGCGAATCGCC 574402 28 96.4 33 ............T............... TTGTTTTTCTGCCTGGGGGATTGTGCCGCCTGC 574463 28 96.4 33 ................A........... TGGACGGCGACGTTGATCCAACCTGGTACCCTG 574524 28 96.4 33 ...........A................ TACGGCACCGAATCGCAGCTGCTGGCTCAGGTT 574585 28 96.4 33 ...................A........ CGATGAATGGCCAATGATGACGGCATCCCAGTC 574646 28 96.4 0 ..............G............. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.1 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGGCGATACGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTAATGGGAGGAAAACGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGAGGGCGAATGAAACTGTGGTTTGTCGAACCCCGGCCGAACGTTTTCGTCTCAGGCGTCAAAGATTCGGTTGCGCAAACCGTCGTTGATTACCTGATGCAGTACACGCCCGCGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGCTATGAAATTCGCTACAAGGGCGAGGTCAGGAAGCCGATTATTGAGGTCAGTGGGTTACAGCTTATTATTGAGACCCTAAAACTGTCGTAATACATGGATATAGTGTTTTAATTGTCGCTCTTTCACAATATATTGGT # Right flank : CCAACTTCGACTGCGTTATCGCCCGTAGTGTGGAAGCTTGCTCCCAGCAGGCAAGGCGTTTTATGGGTTTTAGCCGTCTGCCAGATGACACACCGCTTCGATATTGTGTCCATCTGGCGCAATGACAAAGGCGGCGTAGTAATTGGCGTGGTAATTAGGCCGCAGTCCCGGCGCGCCGTTATCCTTGCCTCCGGCGGCCAGCGCCGCGTGCCAGAAGGCATCAACCTGCTCGCGGCTGTCGGCGCAAAAGGCGATATGCAGCGGCGCGGGTTTATCTTCGCTTTGATAGAGGCATAAAGAGGCATCGTTCGCCCCGGCTAGCTCCGCGCCGTAAGCCGGCTCGCCTTCGCCTGCCAGCGTCACGCCGAGCGGCGCCAGCGCCTGTAAAAAGAATGCCTTGCTCGCGGCATAATCACTGACGCCAAATTTGACATGATCGAACATAAATTCTCCTCGGTATTGGAAATATCTGTACGACATCACCGTGTCGTTAAAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //