Array 1 2038612-2037295 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089610.1 Klebsiella pneumoniae strain MGH126 aeurl-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 2038611 28 100.0 33 ............................ TATCTTCCCCGTCTTTGTCGTCCCACAGAATTG 2038550 28 100.0 33 ............................ CATATCAAAGTAGATTGAAATATGCCCTATTTT 2038489 28 100.0 33 ............................ CAGTTCTAAAACGATACAGGGCCAGCCGATAAT 2038428 28 100.0 33 ............................ TTTTTGCCAAACGTTCGTCTGTTATTTGAGCCA 2038367 28 100.0 33 ............................ CAATCCAGACGCCACCCTCGTCCCGTGGTACCA 2038306 28 100.0 33 ............................ TGCCGCGCCCTCGTGAGTTCGAGCAGATCCTGC 2038245 28 100.0 33 ............................ CGAGGAAATGATCGCCATTGACCGTAAGGCGAT 2038184 28 100.0 33 ............................ CGATGCGCAGTTTTTGGAGACGCGAAAATTCCA 2038123 28 100.0 33 ............................ TTTACTCGAAGGTTAAGCGGGCGTAATATCCTC 2038062 28 100.0 33 ............................ CGGTCAGCACTTCCAGAAAGGCGGATATTCCAC 2038001 28 100.0 33 ............................ TCTGGCGCTGCCGTTCCTCTTCGGGTGAGAGGG 2037940 28 96.4 33 .G.......................... CAAGAGAACGTGAACGGTCTGCCGTCTCCGTCC 2037879 28 96.4 33 ...................A........ TGCTGATTAACTGGGCCATGTCCACCTGTGAGG 2037818 28 100.0 33 ............................ TACGGCTTTATATACCTCGTGAAACTCGTCTTC 2037757 28 100.0 33 ............................ TTAAAAAAGGCCGCCATATGGCAGCCTGATGGG 2037696 28 96.4 33 ...C........................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 2037635 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 2037574 28 100.0 33 ............................ CGGGCTGCAGGCGCGCGCGTCCTCCGACCTGGC 2037513 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 2037452 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 2037391 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 2037322 28 89.3 0 ......A...T.T............... | ========== ====== ====== ====== ============================ ========================================= ================== 22 28 99.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTAACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2048125-2047365 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089610.1 Klebsiella pneumoniae strain MGH126 aeurl-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2048124 28 100.0 33 ............................ TGAAAAACCTTCACAAATCCTGGCCCCGACAGG 2048063 28 100.0 33 ............................ TCCGGCACCACACTGGTGAGCCTGCTGGATTCT 2048002 28 100.0 33 ............................ CCATTTCATAGTTAATCCTGGTCTGACAGGACT 2047941 28 100.0 33 ............................ CAGCGCGTCGGTTTCTTCGCGTTCGATGCTGCG 2047880 28 100.0 33 ............................ TACGCGCCGCTGTCACCATTTCCGCTGCTCCCC 2047819 28 100.0 33 ............................ TAATCCGCAGCTCCGCGGGTACCAGGTCGACAG 2047758 28 100.0 33 ............................ TCAGCTGGGCGTTCGTCAGCAAACTGGCAGCAA 2047697 28 100.0 33 ............................ TATCATCTCATCAGAGAGCTTCATCGGCGACGA 2047636 28 100.0 33 ............................ TATGGCTGCCGACTGACGGCGACGCCGAGAACT 2047575 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 2047514 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 2047453 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2047392 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGAGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //