Array 1 1057946-1060107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018140.1 Klebsiella pneumoniae strain Kp_Goe_822579 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1057946 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1058007 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1058068 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1058129 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1058191 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1058252 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1058313 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1058374 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1058435 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1058496 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1058557 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1058618 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1058679 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1058740 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1058801 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1058862 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1058923 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1058984 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1059045 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1059106 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1059167 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1059228 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1059289 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1059350 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1059411 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1059472 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1059533 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1059594 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1059655 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1059716 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1059777 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1059838 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1059899 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1059960 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1060021 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1060079 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95835-94714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018313.1 Klebsiella pneumoniae strain Kp_Goe_822579 plasmid pKp_Goe_579-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95834 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 95773 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 95712 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 95651 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 95590 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 95529 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [95476] 95475 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 95414 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 95353 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 95292 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 95231 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 95170 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [95159] 95108 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [95096] 95046 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [95035] 94984 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 94923 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 94863 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 94802 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 94741 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //