Array 1 24625-23101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYXN01000001.1 Faecalibacterium prausnitzii strain 2789STDY5834970, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 24624 33 100.0 34 ................................. GTGCATCTGCTTCAAAGATGTGCTGCAAGGCGAT 24557 33 100.0 33 ................................. TGGATATCCTACGGAATAAAATCGGAAAACCAA 24491 33 100.0 34 ................................. GTTGATGGTCGTCAAGAGCTGGTGACTTCGGTCA 24424 33 100.0 35 ................................. CAGCCGTGCGATTGCGCTTGCAAGGTCGTAACCCT 24356 33 100.0 35 ................................. TTTTGCACTCATGCCATTGACCCGGATATCCGCTG 24288 33 100.0 35 ................................. GGCTAGGTTGCGCCCGGCTGCGTACTGCGCCGGTG 24220 33 100.0 35 ................................. CCGCCGCAGTTGCGGAGCGCGGCGCAGCCGCTGCG 24152 33 100.0 35 ................................. TTGTCCAGCTTGGCTGCATAAGCCAGAGCCTTGCG 24084 33 100.0 34 ................................. TTGCACTTTGAAGTGCTCACTCACTTGGTGGGTG 24017 33 100.0 36 ................................. TGTTGTGCGTCCCTGCCGGGTATATGTCCGGCAAGG 23948 33 100.0 34 ................................. AAAGTACAAGAATTTGCCTGCAAAGATGGTTCAC 23881 33 100.0 37 ................................. ACTGACCAACGGTTACTCTCAGCCGTTTTTGCAGAAC 23811 33 100.0 35 ................................. CTTTCCAGTCCTGCACGTCCACAGAATCAGGGCCG 23743 33 100.0 35 ................................. TTTGCCATTTTTTGCCAAAGACCGCGCACAAACGC 23675 33 100.0 35 ................................. AGCAAGAGGGGGAGCGCCTGCGGCGCTCCCCCTCC 23607 33 100.0 34 ................................. GTACTTGTATGGATTGAGCACCCCAAGTATACCA 23540 33 100.0 34 ................................. CGACAGCCCCGCCAGTGGCGGCGGCTGCCCCGGC 23473 33 100.0 36 ................................. CGACAGCCCCGCCAGTGGCGGCGGCTGCCCCGGCAC 23404 33 100.0 34 ................................. TCCATCTACCCATCCATAGGCAGTACAGCCATTC 23337 33 100.0 36 ................................. TCAGGGTGGTGGTATGGGTACACCTATGGACAGTGG 23268 33 100.0 35 ................................. CAGGCTTTGCCTGGAACCAGACCGGCACACCCACA 23200 33 97.0 34 .......C......................... CTGCACTTCCCGGACGGTGTAGATGATATACACC 23133 33 93.9 0 ..............A......A........... | ========== ====== ====== ====== ================================= ===================================== ================== 23 33 99.6 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CTCCGTTTTTCTGGAAATGAGGTGCAATCATGCTGGTACTGATCACCTACGACGTAAACACCGAGACCTCCGCCGGACGCAAACGGCTGCGCAAGGTTGCCAAGAAGTGCGTAGATCATGGGCAGCGGGTGCAGAATTCCGTGTTCGAATGCCTGCTGAACGCTTCGCAGTACGCAGTTCTCAAAGCAGAGCTGACCGCCCTGATCGACCCTGCCTTGGACAGTCTGCGGTTCTACCAGCTGGGCAACAACTACCAGACCAAGGTCGAGCACGTTGGACTGCACCCAGAATTTGCCCAAGACAGCGTGCTGATCTTTTGATGTCCGGCCAGTGCGAACCGGCAGCACACATGGTTTTCCGGGACGCTTCGCACCGGAGTACCAGCCGTTTGCGCAAGTAACGGTGTGATTTTGCGGTTTGGTTTGCAGACCTCTCTTTGCAATTTGTGCAGAGAGGTGTATAATGAGACAAAAGCATGGTTTTTTCTCTCTGTTTTTGCT # Right flank : TTAAAAAAGCTATGGTAAAATCGCAGCGTCCGAAACATCCTGCGGTCTGCCGTTATTCACATACGGGTTATACCAGACATTCTGGAATATGCATCCTTCGATCCAAATGTTTTCGCACCAAATGCTCTCGCCGTTCTCCATGCGTCCCCGCAGCCGGATGCCGCAGGTCCATATTTTGTTTACACCGTTCGGGTTGATGCCTTCCCATGTGCAGTTGACGAACCGGATGTTTTTGCACCCCTCCAGCACCATGTTCGCGCCCTTCCAAAAGATCACGTTCCGAACTTCCAGATCTTCAACGTTGTTGACGATGATCTCAAAGTACTTATACTTTTTGTTTCCTCCGTCCACCACGCAGTTGCTCTGGCTCAGCGCCGCCGTCAGTGCTTCCGTGTCGTCCGTCTCTCCGTCCCCCGCCGCACCGGGAATACCCGTCACTGCGCCGCCGCCCGTGCCGCTTCCGGCCATGTCCCACGCTGCTGCAATGCCTGCTTCCATGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5604-5962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYXN01000036.1 Faecalibacterium prausnitzii strain 2789STDY5834970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================== ================== 5604 23 100.0 46 ....................... CTATTACTGCAATCGTTGTAGTATGCCTGAGTGTTGAATTACAACT 5673 23 100.0 43 ....................... TTTGCTACTGCAGCCACGGTTACCGAAGGATACCATTACAACT 5739 23 100.0 45 ....................... ACCTGACCTTCCGGAGGATCAACAACATGAAGATCAATTACAACT 5807 23 91.3 43 ........TG............. TTGTTGATGTGCTCACGAACGAGAGCGGAAATCAATTACAACT 5873 23 95.7 44 C...................... CCGTCAGATTCCATCTTGCACACGATGAACGGCTCATTACAACT 5940 23 87.0 0 .................AA...A | ========== ====== ====== ====== ======================= ============================================== ================== 6 23 95.7 44 TATCCCCGCAAGGGGACGGAAAC # Left flank : CAACCTGCCGGAGGTGCATCAGCCCCGCGCCGGCGGCAAACGCATCTGCATCATCCACAAGAACGAGCCGGGCATGATCAGCCAGATCACCGCCCTGACCACCGAAGCCGGTCTGAACATTGAAAACATGGTGAACAAGAGCAAAAAGAACATGGCCTACACCATGCTGGACGCCACCGGTGCCGTGGACGCCCGCCTGAGCGAGAAGCTGAGCAGCATCCCCGCCGTTATCCGGGTGCGCATCCTGTAAACCGCCCAAAGCAGCACCAAAAACACCCGCCCTGCCGGAGCACTTTCTGCCCCGCCGGGCGGGTTTTGTGCGCTGCGGGCATTTTGCGCCCGCCGGGCTTTCCGCTTCGCACCCCGGAATCCGGCCTTTTTTCCTGAAAACGTTCTTTTCTTTTGCGGCAAAAAGAGGTATAATAAGTTTTGTATTATGCGTTCTTCCCTGTTTTGCGCGTATTTTTCGCGCTTTTCCGGTGAAGTTTGCTATTACAACT # Right flank : AGCCCCTCCGCGCTGGTATGAACCAGTGCGGAGGGGCTTTGCTTTTCAGGGTTCTTCTGTTTTAGGGTCAGCGGGCGGGCGTTCCGGCGGGGATGGCCGCGTCAACGGGAATTTCCTCGATGCCCTGCGGGACGTTACGCTTCAGGGGGCGGATCTCATTCAGATAGGCGGTGATCTTTTGCAGGGTCTCTTTAATGTGCTCTGTATCCAGCGGCCGAACGTGCTCGCTCTGCAAGCCCAGGTCGCTGGCGCTGGCGTGATTGATCTGGTTGCGGTACTGCATCACGCACTGGTAGTGCAGGGCAGCCTGCTCCAGCTGCGGGCGGATGGCAGGGTCGATGACCAGCTGTTCGGCGTCAAGTACCTTATCCAGATAGTTGTGCACTTCTTTAGGTTCGGCTACGCGGAACAGCATATTACCGTCTGCATCGTTCCGGCTGCGGGTCAGGCGCAGGTCTGCTGTATAGGGACTTTCCCGCCGCAACAGCGTCAACCGGCAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10071-10693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYXN01000036.1 Faecalibacterium prausnitzii strain 2789STDY5834970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================================================================================================== ================== 10071 23 95.7 44 ........T.............. AATATGCTTATACCAAATACTCATACGAACCTAACATTTCAACT 10138 23 100.0 43 ....................... TCGAAAGTAGCCATGAATCCATTAGGATGGACAAATTTCAACT 10204 23 100.0 45 ....................... AGGCAGGCCGCAAGCGCCACATGGGCGTGCGTCCCGATTTCAACT 10272 23 100.0 43 ....................... ATCTTTCCATTGTCATTAATAGAAACTTTAACAGATTTTAACT 10338 23 95.7 43 ........T.............. GGTACGAACGCCGTCACGTTCCAGACAGGTCAGCATTTCAACT 10404 23 100.0 43 ....................... AGCAAGATCCAGTTACCGTGCTGATCAAGCAAAGATTTCAACT 10470 23 100.0 178 ....................... TTAATTGCCTGAGGACCACCTACATCAAACTTAGAATTTCAACTTATCCCCGCAAAAACCCTCTCAGGCGCTGCGCGCCAGCTCTCCCGAAGGGAGAGCTTTTGTAGCTGCCACTTACCTTGTACTAAGCTCCCCCTTTCGGGGGAGCTGGCACGGCGTAAGCCGTGACTGAGAGGGT 10671 23 91.3 0 .C................A.... | ========== ====== ====== ====== ======================= ================================================================================================================================================================================== ================== 8 23 97.8 63 TATCCCCGCAAGGGGACGGAAAC # Left flank : GCTACGGCACGGTGGTCGATCTTGCGTTTCCCGCCATCGACCCCGCCGCTGACGAGGCCGCGCTGGACTCCCTTGCCACGGTATACGCCGACCACATCCTGCACCTTAACCCGGACGCCGTGCTCTGTCAGGGCGAGTGCACCTTTGTGTACCGGGTGGTCCAGCGGCTGGAAGCCGCGGGCATCCCCACGCTGGCCGCCTGCTCCCGCCGCAAGAGCCAGGAGACCACCTACCCGGACGGCAGCACCCTGAAGCGCAGCATCTTCGCCTTTGCAGGCTTCCGCCGCTATGGCTCGCCCTGAACTTCCCGGTGCGGCTGCCCCCATTCAGCCGCCTGTTTCTCCATTTCGGTGGGCGGCTCGCACCCGCTTTTCCAGCCTCCTGCCAAAATGCTCTTTTATTTTTCGTATGGTTGTGGTATATTGGTCTTGGAATTGTGAAAGCTGCCCTGAAATCAAGTATTTTTCTCTTTTTCTTAGAACAGCTTTGCTATTTCAACT # Right flank : CACCTGACCGTCAGAGTTGCTCATGAACATCCGAGTACCATCCCCGCAAGGGGGCAAAAAACTCCGCATCAAAAATGTTGCGGAGTTTTTCTTTTGCGTGCCTTAACTTTTCGGTTTTCGTGGGCTTTTTCTCTATGAACAGAGCTGCTGCGGCATTTTCTCTGCCATGGCTTTTGTATTGCAACAAAATGTGCTATAATAGAGCCAAATCAAAGCATCTCTCACAAAATATACAATTATATTTTTCGTTTGTTGTGCAACTCTTCCACAATTCGTAAAGGAGATGGTATTTTGAACGTTCTCACCCTGCAGTCCACCTATGGCGGGCTGCTGCACGACACCGGCAAAGCGGTGTACCGTGCCGGTGGGCAGCGCGGCAGCCACAGTGAACAGGGCTGCCAGTTTTTGCACGGCGTTTTGTCCGGCGCAGACTGGACCCCGGTTCTGGACTGTGTGCGTTACCACCACGCCGCCGCGCTGCGCGGTGCTGCAAAAACACT # Questionable array : NO Score: 3.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-2.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //