Array 1 762587-764597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048739.1 Halogeometricum borinquense strain wsp4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 762587 30 100.0 34 .............................. GGCCTTGCCGGACGCTCCGGCGACCGTGCAACCC 762651 30 100.0 34 .............................. TAGGTCATCGTCCCGCAACGCTGGCACTCGAACG 762715 30 100.0 36 .............................. ACGTATCAGGTGGCGAACTCCCCGAACCGCACGAAT 762781 30 100.0 36 .............................. GTCCATCCCGAGGAGAGTGCGTCGTCAGCGACGTTG 762847 30 100.0 37 .............................. TCATTGGACACATCGATCCCGCGGCGGGTCGCCGGCA 762914 30 100.0 38 .............................. ACAGGTTGCTTGCGACGCTCATGGTTGACGATATCAGT 762982 30 100.0 36 .............................. GTCAGCGTGAGCACGCCGTCCACAACGGCAAGATAG 763048 30 100.0 35 .............................. AGCGAGTGTCTGCGTTTCGTGGAACCGCGCGTAAA 763113 30 100.0 35 .............................. AACTGCCGACGCTAAAGCGTTGGCAAGGACGATTT 763178 30 100.0 38 .............................. GTGCAAAAACTTCAGAAAATGCTCAAGAAGGTGCGACC 763246 30 100.0 37 .............................. AGTTGTTCACAAGACAGTCGTCCCCAAAGGTTTCCAC 763313 30 100.0 36 .............................. GAACGAATCATCCGGCGCGGCGTCGAAGAACTAGAA 763379 30 100.0 35 .............................. ATCCGGGACATCAGACGTACCTCCTGCTCAGGATG 763444 30 100.0 35 .............................. CAGTAGCTCATGGGTCGGTGATAGGGTGACAGAGT 763509 30 100.0 37 .............................. TGCCATCGCTGCTGGTCAGGGGGCTATCCAGAAGCTC 763576 30 100.0 34 .............................. AGTGGCGCGGGGCGAGTGAGTTTCGAGATTCGCG 763640 30 100.0 35 .............................. AGGTGAACGGGAACGGCGAACCGCTGAAAGGCTGG 763705 30 100.0 38 .............................. ATCGGCTCACCAACCCTTGACGACATCTTCAATCCTGA 763773 30 100.0 35 .............................. ACGGTCACGTTGACCGCAGTCAACGACGGGACGGG 763838 30 100.0 36 .............................. TTGAGTCTGCATCATCGATGAGTTCTGTATCAACAA 763904 30 100.0 35 .............................. AGCTTTCTCCCACAAATCGCGCACTAGTTTAGCAT 763969 30 100.0 36 .............................. GAATCCGTCATCTGTGATAGGCATTAGTCAAACCTC 764035 30 100.0 38 .............................. GACCGAGATGATCAATGCGAGGTTGCCACGATATTAGA 764103 30 100.0 35 .............................. GGCGGGAGTGGCCTCGACGATAACGTGACTGCGTT 764168 30 100.0 37 .............................. ATCCGTCGCTCTATCTGTTCGCCCGATTCCGCCCAGG 764235 30 100.0 37 .............................. ATGGAAGCCAGCGAGGCATTCGGAGATACGCCTCGTT 764302 30 100.0 35 .............................. TCAAACTCCTCGCTTTTCAACAGCACCTTGATTTC 764367 30 100.0 37 .............................. CTCAAAGCCCCCGAGGTGTGTCGGGAGTTCTTAGAAC 764434 30 100.0 37 .............................. AACCAAGTCGTTGTCAAAGGGGCAGTGCAGAGTGATG 764501 30 100.0 37 .............................. CCGTGTGTCCCACTCATCCAGACATTGGATTCAAACC 764568 30 90.0 0 ..................C...G.....A. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.7 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TATGAGTTTCACAGTAGGACCAACTCATGTGGCTAGAAAGCGCGCTGACTGGATGAGACCCGTAGACGAGCACATCCTTGAGGTGATGCGCGATGAAGGGAATATGACACCGCAAGCCCTCGAATCGTTGGACGTGACTGTTGCAAACTACGCCAGTAATCGACTGTCCTTGATGACTAGATATGGTCTCGTTGAGCGCGTCGTTCAGGGTCTCTACCGCATCACCGAGACCGGGGAAGGTTTCCTTGACGAGGACGTTGACGCTTCGACGCTGGAGCCTGTCGGAGACGACGAGTGACTGTCTTTTCTGGTTGACATCGGTAGTTGACACGGCATGTTAGCCGTGGCTAGTGAGTGCGAAAAGATTGGGAGGGTGGTGTCCGGATTGGCCGGACGATATTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGAGGGTCGACGGAAACATTGATCTGAATACCGTGTCTATGGGCCTCTATGCCCGTGTATTCGCACGG # Right flank : CATTGTCATGAAGCTCGATCCGTTCATCGGCTTCAACTGTTAGACGAACGCCGATGAACGCAGAATCGTCCTCAATTTACTCCGTGAGAAAAGGCCCGTAAGAAACACTCATGATCTGCCCCATATATATTTCATCCAACACATACAAATAATGGCAAACGAAAAATAGAAATTGTGTTACATAGCGACAACCAGAGAAGAGGGGTGGTATGAAGCGTGCGCATCGAATTAGCACTCGACGCTGTCGCTGACGCTGCCTACGACACATCATACCACCATAAGGTTAGAGGGAGGATCTGGTGCGGTCTTGAGGGCAACGACGCCTTCGCCGAGGGTCACGATACCGACCACGGCATCGGATTCGCGTACTCGAACGTGTTCCCGTGGGGGCAAATCCAAGAGGGTGACCGCCGGTATATCCGTATCGCGTCACCGCGACGAGCGCTCTTAGACGACCTCATTTCCCACTTCGGGCGCGAGCGCGCGTTTGATGTCGGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 774645-775602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048739.1 Halogeometricum borinquense strain wsp4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 774645 30 100.0 38 .............................. AGCGATAAGGAACTATTAGACGCGCTAAGAGACCTCGG 774713 30 100.0 35 .............................. CTGCTTAGACGGCGGTATGAGTGTGTCCCGAGACG 774778 30 100.0 38 .............................. ACTCGTGAAGAATCCGTTGCCTCACAAATCGGAGTGGA 774846 30 100.0 36 .............................. CTCTCGCGGGAGGGGATTCAGCGATGAAAGCGCCCG 774912 30 100.0 36 .............................. GTGCCAATCTCCAAAGATGAAGCCTATTTATTGTCA 774978 30 100.0 35 .............................. AGTCCTTAATCCACTGTGCTGCTTGTGACGGCGCT 775043 30 100.0 37 .............................. GAGCAACAAACCGACTCAACAAACGATGGTGCGGCAG 775110 30 100.0 34 .............................. GTTAGTGAACAAGAGGGATGCTGGATCGAATCGA 775174 30 100.0 34 .............................. ACACAGCCGTTCGCAACGCAGGACAACATTCTGC 775238 30 100.0 37 .............................. AGTTCACCGCCGTTCTCCTCGGCCACCACCTCACCCA 775305 30 100.0 37 .............................. ACCTGTTCTGCGGTGGTGGCGGCTTCTCGACGGCACT 775372 30 100.0 40 .............................. GAGTGTGGCTGTGATGCATCTCTCACGTACCTCGTGTCTG 775442 30 100.0 35 .............................. CCCATCACGTGACCCACCAGGCAGCCCCAACGACG 775507 30 100.0 36 .............................. GAAGACAGCGGTTTGAGCTATGTTATCCCGTGCATC 775573 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : AAGACGCTTATTCAAACAGATGTCTACAGTTTGAAGAAACATCTGCTTACAGGTGAACCGTATCACGCAACGGAGAAGTGGTGGTAGAATGTATGTGATCGTCGTGTACGACGTGCCCGCTAAGCGAACCCACATTTATCGAAAGCTACTCCGACGTCGGCTTGAACACCTGCAGTACTCCGTCTTTTTTGGTGAGCTTACACCCGGACAGGTAACGTCTCTGAAAAATGAGATCGAGAACAAGATTGCACCGGACGACTCAATCGTCGTCTTCGAGTCTGGGAATCCAGACGCTTTTGATTTCACCACATACGGAGACACAGATGATCCAGGGAGCCGATTTACCTGAGGTTGTGCTGGAACGTTCTGAGTAACAGTACTCGAAACCACTCTTGCAGGTTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGAGGGTCGACGGAAACATTGATCTGAATACCGTGTCTATGGGCCTCTATGCCCGTGTATTCGCACGG # Right flank : CACTCTCAAGAAATCAAAACGAGACGTTCCGAATCAGGCGTCGGGGCGGGGCATCGATTCCAGTTCTTTGATTCGGTTCGTCTTTTTCACAGCCGCATACTGCCGTTGCCACGCTTCTTCAGGGAAGAGACCGTTGCGGTCGAACAGTTTGCGTGCTTCGGGAGTGAGTTCGAAGAACTGGTAGGGATAGCCCCGGATTCGCTCCCCCGGTTCAAACTCGAGAACTCGGACGACACCAACACCTGCTAATGTGTTGAGATGCCGGCGAATCGAGTCCTCGCTGAGTGGCGGGTTCATATAGTCCAGCTCCTCGACACTGGGTGCCCCCAACGGATGGCCGACTATATCCGCGATGATGTCCGCCCGTTTCTTGTCCGTGGCCCGCTGCAGCGCTCGCCACGTATTGAACTCTGAGTTGGTCTCGGAGACGCCGCCACCGTCTCCAGTCGCGTGTTCTGTTTTCGGTTTCATATTGCACCCTCGTTCTTCCACTGATCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2633179-2633602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048739.1 Halogeometricum borinquense strain wsp4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2633179 30 100.0 36 .............................. CTCACCCGACGCGAGTTGCCGCGCACGGTTCCATCC 2633245 30 100.0 35 .............................. GTTCTTTAACTCCTCGATGGCAATCAGGCCAACAC 2633310 30 100.0 35 .............................. TGCTGGTCGAATCCAAGGCTCCGAACCGCATCACG 2633375 30 100.0 36 .............................. AAAGATGCGGCAAACAACTACTGCGAGCGACAATGA 2633441 30 100.0 36 .............................. CTCCTCTCGACGAAGCGCCGGCGCCAGTCTACGGCA 2633507 30 100.0 36 .............................. GGATTGAGTCGTCAGTCATTGTCGTCCTCCATGTTT 2633573 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 36 GTTACAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGGCGGCGACGTTAGACGAGGTCCGACTCCGAACACACGACGGGTGGCGTCGCCGGTTCGAATCGGAGTTCGCCGCTGAATACCGTCCCACGTGGTGGAAACGACTCTCTGACGCGCTGTTGAAGCTTGGAGTGTTATTCTTGCTGATCGTGAGCCTGCTCGCCGTGGTTGCTCCCGACTTCACCAACGGACCCGGAAGTATCGTCGGCATCGTCGGGGCGGTGCTCCTGTTCGGCGGACTCGGAATCGTCGCAGTTCGTGCTATCAAGTACGACCTCCTTCCGGCTCTTCGACGGCTTCGAGCCGACCCCTCGGGTGCGCTCCGAGCGGTTTGGGACCAGTTCTGACGATGTGCATTTGAAATCGTTTTCTCTGGATTGACTCACTCAGCGGACTGTCTCTCCATCGATCCCCCGGGGGTAGCGGGGGTATTGGAGGTCGACGGAAACTACTTGTAGTAACTGTCCATCATAGAGCCTGTGTGCCCCTAATCGGGCATG # Right flank : CGATGTGGAACACCGTGAGACCGATTTTCAGCATCACCGAATAGGTGGCTTGAACGAACCGAGGTGTGTGCGAACGAATCGAACGAACTAGCGTGTGCTTGACGAATATACCAGAATCATTATGAATACACCGTACATCAAGTTTCTGATCAATGGGAGAGGAATTATATGAGGTTGCTGTCAATCAAAGAGAAAGATGGGACTTTGATCTACAGAGGAACGGACCCGCAAGGGTGATCGGTCCTCGTCTGTCCCCTCGATCCAAGAGCTGACGGGAGGCTCAAGTCGAGATCGTGGTCGGAGTGGCGGACCGCTCACACCACAAGCGTGTGAGCAACGCTTCGGGGTAGAGATCTACATGGACGGGCTGGATACGAAGATTCAACGACTGGCCAAGAAACACGGCGAAGATCAAGTTCGGGAATGGGCCGACGAAGGCATGACTGTCGATACGATGGGCAAACCCCGAGACATGCGCGCGTTCCGTGAACGGCAAAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //