Array 1 40584-39517 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVS01000002.1 Escherichia coli strain VREC0438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40583 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 40522 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 40461 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 40400 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 40338 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 40277 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40216 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 40155 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 40094 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 40033 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 39972 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 39911 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 39850 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 39789 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 39728 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 39667 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 39606 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39545 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57334-56085 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVS01000002.1 Escherichia coli strain VREC0438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57333 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 57272 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 57211 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 57150 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 57089 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 57028 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 56967 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 56906 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 56845 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 56784 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 56723 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56662 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56601 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56540 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56479 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56418 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56357 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56296 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56235 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56174 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56113 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //