Array 1 218688-218359 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUP01000024.1 Pectobacterium peruviense strain A350-S18-N16 Pectobacterium_peruviense_A350-S18-N16_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 218687 28 100.0 32 ............................ CGATAAAAACCCCGACATGTGGGCGCAAATTA 218627 28 100.0 32 ............................ ATAACGGACTTTCCGGCCACACCAATGTTTGC 218567 28 100.0 33 ............................ CAGTCTGATGATCCGCCGAGCCCCGCAAGCGGC 218506 28 100.0 32 ............................ GTCACGACACCGAGCTATCAGAGTGGTTTACC 218446 28 89.3 32 ...........C.CT............. AACAAACCGATTAGTGGAGTGATTGCGAAAAT 218386 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================= ================== 6 28 94.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGCTTGACCGGGCGCAACATGATGGTATCCCCCTCACGCACGATCTCTAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCGTTTTTAAATACCGAAACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTAACTAAAATATAGGCTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAAATAATTGATTTTTAATATCAATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATAGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAATG # Right flank : TTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTACCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCCAGCAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCAGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACTTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAATA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 228380-229967 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUP01000024.1 Pectobacterium peruviense strain A350-S18-N16 Pectobacterium_peruviense_A350-S18-N16_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 228380 28 100.0 32 ............................ TATGTCCGCTTTTTTGTCTCCGTCTAATAATG 228440 28 100.0 32 ............................ GATATCAAGCAGGTCAGAAACCCGAAATTTCA 228500 28 100.0 32 ............................ ACATCGCACCCAATCAGACGCCGCCAGCGGCA 228560 28 100.0 32 ............................ TTTTAACAGGAAGGCTTTAGGGCTGTCTTTAG 228620 28 100.0 32 ............................ CGCACAGGAAGAAGCGCAGGCGACCACGACGA 228680 28 100.0 32 ............................ TGGAAGAGACTCCGGGCAATGATGGCTGAATT 228740 28 100.0 32 ............................ GTGATGTGATCGATCAGGTTGGTGAAACCTAT 228800 28 100.0 32 ............................ TGATCAATCGCAGTCAGCAGCGGGTCAATCCA 228860 28 100.0 32 ............................ AGTCGCCTATCAAAAATCAAGCACATCGCCGA 228920 28 100.0 32 ............................ TCATTGGCATCGGCTAGTTTAGCCACCACCAG 228980 28 100.0 32 ............................ AACGCATAACCCGCTGAGCAATACCCAGAGTT 229040 28 100.0 32 ............................ TGCCACACTTTCCCGCTGTGGCTACGTAAATC 229100 28 100.0 32 ............................ AGAGAGCGCAGGCGCAGCAGCAGGCGGCGCAG 229160 28 100.0 32 ............................ TGGCCAAACAGATTTTACCGTTATTCCCTGCC 229220 28 100.0 32 ............................ AAGGTAAATAGCGTCCGAGTAACTATGAGTTC 229280 28 100.0 32 ............................ TCATAAAATAACCAATAATGTGGCGGCACGCG 229340 28 100.0 32 ............................ AGTGGCACAAGCGATGTTTATTGCTCAAGTGG 229400 28 100.0 32 ............................ ATAGTATTTCAGCAGGAAAGCGCGAACCTCTC 229460 28 100.0 32 ............................ AACACAATCAAAGCGCAGAAAGGCTCTCTCAG 229520 28 100.0 32 ............................ TTTGGCATGTAGAGGAAAACGATGGGTATTAC 229580 28 100.0 32 ............................ GATGCAGGTATGTTTATGGGGCCTGGTGAAAT 229640 28 100.0 32 ............................ CATGCCTAACTTGTATGTACTTTTGCCTATGC 229700 28 100.0 32 ............................ GAGGAGAAAACTAACTCCGCCTGGCAGAATTT 229760 28 92.9 32 ...........C.C.............. TTAAGTAGCGGAGTGAGGTTGAACTGGTTTCG 229820 28 96.4 32 .............C.............. TATGACACTGACCGCTCACGCGGTGTCAGTCA 229880 28 92.9 32 ...........C.C.............. AGCACCAAACTCTAAGGCGTAGGTCTGCTGCA 229940 28 82.1 0 .............C.......C..TTC. | ========== ====== ====== ====== ============================ ================================ ================== 27 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTGACGAGAATACGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAGCCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGAAAAAATATAATCTTAAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAAATGATGACCGCAAAAAATTTTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATGGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGAGCTACA # Right flank : ACGGTACTCAGCACTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGACCTATTTTCGTAATGTTTTCAAGTAATGGGTTTCTTTTGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACTATCATTTTTCCGTTAAAGTACACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAGTGAGGCACTTGTGAAATATGATCCGGTTTTAAAAACGTTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAACTCAACTCAACTCAATTAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 236834-235966 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUP01000024.1 Pectobacterium peruviense strain A350-S18-N16 Pectobacterium_peruviense_A350-S18-N16_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 236833 28 100.0 32 ............................ AAAATATTTTCTTCAATGGTTTCCGGGTTTAA 236773 28 100.0 32 ............................ TCCTGCCCTGGATGAGACTCGCGGCGGCCAAT 236713 28 100.0 32 ............................ TTGGCAGGCGATGCGCAGCGTTTTTCCTATCT 236653 28 100.0 32 ............................ GCTAAGACGACGCTGGGATTATCTCAGGATGA 236593 28 100.0 32 ............................ ATCGTTACTGCGTTGACACTGCGGCGAATCCT 236533 28 100.0 32 ............................ TTTATCGGTGGATTCCCCTCGTTCGAAGATCC 236473 28 100.0 32 ............................ ACTATTTCACCGGTCGCTAATGGCTCATCAGT 236413 28 100.0 32 ............................ TCGGTCATGCACGGCAGCTTGCAGACGGGAGT 236353 28 96.4 32 ............G............... GTTGTCGCCATCTCCGGCCCAGCGCTGGAGGC 236293 28 100.0 32 ............................ TACGGCCTGACCGATGTAGATGACGAAACGAC 236233 28 100.0 32 ............................ TACATCCCTGGCTGTGAGACGCGTTTTATCCG 236173 28 100.0 32 ............................ GATCCTCTAGCCCCCCGCTACTATTCAATATC 236113 28 100.0 32 ............................ ATGCGCGATTTTCTCAATGCAAAAGAAGAGAT 236053 28 92.9 32 .C...........C.............. GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 235993 28 89.3 0 A............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATGAAAACGAGGAACTGATACTTTCTCCGACGACTGGCGAACTGTATGTTTCCATGCTGGTAGGCGTAGCGATGACCACTATCGGCGTCGTGAAGTATCGGCACGCTCAGCACGACCCGATAGATCCTCGCTCAACGCAGACCAAAACAGTTGCCACAAAAACAATCACCGCATTCGTGCTGATCGCGCTTTACCTGGCACTTCCGCTGTACCTCGATCTGCGTGAACCTCTACCCTACTGCGCCTTTAGCCCCAGCGGACAGCAGTTAACGGTATGTTTGGGAGAGAGTGACGAGCGGATCATTGTGGAATGATGCAAATCGGAACCGACAGGGTGGATAATACAATTTATAACGTGCCTATTCTCAGACCCTTTTTTAAGGGCGAGTCGTAACTTACTGATTTTTAACCACCTACGGCCTCGATTATAAAAAAGGGTTTTCCCGAGAAAACAGGCTATTCTCTTTAATAATCTGGTAATTAGCATAAAATCCTTACT # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTACTGACATGGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGTCGCCTGACTAATCAGGAATTGAGCGAACTGGTCGGTCTTTCCGCCTCGCAATGCTCGCGCCGCCGCATCGCGCTGGAACAGGCACAGCTCATTCTTGGCTACCATGCTCGCCTGTCACCGAATGCCGTTGGATTGGAATGTCTGGGGTTAATTGAAGTCCGGTTGATCAACCACACCAGCGAATATGTTGAACGCTTTCATCAAATGCTGGGGGAAGTGGATGCGATTATTGACGCCTATAAAACCACGGGCGATGCTGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGCGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //