Array 1 3076220-3077447 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008869.2 Pseudomonas aeruginosa strain W16407 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3076220 28 100.0 32 ............................ TTGATCGCTTCCAGCATCGTGGCGGCCTGTTC 3076280 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 3076340 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 3076400 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 3076460 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 3076520 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 3076580 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 3076640 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 3076700 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 3076760 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 3076820 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 3076880 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 3076940 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 3077000 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 3077060 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 3077120 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 3077180 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 3077240 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 3077300 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 3077360 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 3077420 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3087560-3085972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008869.2 Pseudomonas aeruginosa strain W16407 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3087559 28 100.0 32 ............................ GTAACGATGGTGCCGACCTGCCAGACGCGGCC 3087499 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 3087439 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 3087379 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 3087319 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 3087259 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 3087199 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 3087139 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 3087079 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 3087019 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 3086959 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 3086899 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 3086839 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 3086779 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 3086719 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 3086659 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 3086599 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 3086539 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 3086479 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 3086419 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 3086359 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 3086299 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 3086239 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 3086179 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 3086119 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 3086059 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 3085999 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //