Array 1 240552-239794 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHN01000002.1 Haemophilus haemolyticus strain M11818 M11818_HUY4654A104_cleaned_ctg_6932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 240551 37 100.0 35 ..................................... TTGCATCCTGGTTTGTACTAATTCGATTGAATCTT 240479 37 100.0 33 ..................................... GCAATACGATATTCTCTTTCTTCTGCTTGAACT 240409 37 100.0 34 ..................................... ACTAATGTTAACCTCTCTTTTAACTTTACTTTTA 240338 37 100.0 35 ..................................... CTATCAACCGTTGCAAACTTACGCCTATCATTTGC 240266 37 100.0 36 ..................................... TTTAAGAATTCATACGCATTGTTAATGATTTTCATC 240193 37 100.0 36 ..................................... GTAGCTCTCAAACCTGCATCTACAGTATCAGATGCA 240120 37 100.0 34 ..................................... AACGATAGGCGATTATCTACCCAAAAAATGCCAT 240049 37 100.0 36 ..................................... CAACATACCAATTACCAGTATAAACCGCTTCCGTGA 239976 37 100.0 37 ..................................... CAACCCCCATATCAACAGGGGTATCACCCTTCAGCCA 239902 37 100.0 35 ..................................... TTCAACCCGTAGACCGTTTTTACGGTATCGTGTTG 239830 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.8 35 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTACCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCAATTGGTTGAATAGGAAAAGAAGGTAGAGAGAAATGATGCTTTTCTGCGAATTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATCGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATAAAGTATAATCAGATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTAGTGTAGTGAGGACTGGCGCATCTGAAAAACTCTGCTAAAATACACCGCACTTTTGGCTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATGCCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCGAACACCCTGCTGCA # Right flank : TAAGTTTTTACTTCTATCTTAAAATTATTGCTAGCTTTGGCATTCCCCAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCCTCAAGGAAAGCAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGTGGGCAAGTTGTGGCTCAAGCATTATCAGCAGCAATGCAGGTCGCGCCTGAAGATCGTATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCAGGAGACAGTCAATATCCGATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGCCATGTAACTGCGTCTTTCCAAGTGCCAGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGTTGGTGCACCTGAAGACTTTACAGATGAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 252778-254100 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHN01000002.1 Haemophilus haemolyticus strain M11818 M11818_HUY4654A104_cleaned_ctg_6932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 252778 37 100.0 33 ..................................... TGCTGATGTTGAAGTGCTAAATAATCCACGAAT 252848 37 100.0 30 ..................................... GAAATAATGATCTACATAGTAGGGTGCATT 252915 37 100.0 36 ..................................... AAATAACTTCTTCTAAATCTTCTGAATAGTTATAAG 252988 37 100.0 34 ..................................... GGCTAACCGCTTTTAATGTTTAACCTTGTTTTCT 253059 37 100.0 35 ..................................... GTAAAATGATTTCATCAATTCATCAAGAGCCTCAT 253131 37 100.0 33 ..................................... ACAAATGTTGGTTTACCTTCAATTTCAATTTCG 253201 37 100.0 35 ..................................... ACAAGGTACTGGAAAACGTTTGTTTGGTGGAAGTC 253273 37 100.0 36 ..................................... ACACTCAACTTCTCTTTCCAATGTGTCGGTGCGCAG 253346 37 100.0 35 ..................................... TCAAGTCAGCCGATTGATTCGTATTCGTTACGGAA 253418 37 100.0 36 ..................................... GCGCATAATCACCTAACTTAACAGCACAAATTTTGT 253491 37 100.0 35 ..................................... TTAACTGTTTGACTTTATCCACCAATGGAGAGAAC 253563 37 100.0 29 ..................................... CCATCTTTAATGCTGCACCTTTCAATTTC 253629 37 100.0 35 ..................................... TAAAGAACGAACAGCGGTATTAAGACCAAACATAA 253701 37 100.0 37 ..................................... GCTAATTTCTTAGCAGATGCTAATAAATTATCAACAA 253775 37 100.0 35 ..................................... ATCGTCTTGAGCTGCTAACTCTTCTGCATAGTTAG 253847 37 100.0 35 ..................................... TTGGATAAATCGCCCTTATTTGCTCAAGTATTGGA 253919 37 97.3 36 ....................G................ GTAATAATAGTCTAGTTTATTTGAATCTGTCATTGT 253992 37 100.0 36 ..................................... TTACCGAATTTGATATAAGTTGAAATCATAGTTGAT 254065 36 81.1 0 ..............T......T.......-GG...GT | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 98.9 35 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCTATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTATCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTGGCTGAGTTTTGAAAAAAAGAAGAATGATAAGAATTGTTCAATATTTAATCAAATTAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : TGACTTTACTTTCTCACCTGTAAAGATATAGAGGATTTATTTATGATGCATTCTCTCAAATGAATAAAACAACATTCTATAGTATAATAGTAATTATTCTCAAAATTGAAGATTCATTAATTTTTTATCTGAAAAAACGCTCAAAAATAACTCAATGCCTTGATAATATTGCTAAACTGATGAAGTAATATTATTGAGAAGAATTATATATTCAAATTAGGACTATGAATAAATCATGATTAAATATATCCTGGTGATGCTCGTCTTTGCATCACCGTTCTTTGCGATGCTCTTATTTCCATTCTTGGGATATGCATTGATAAAAATGGTACTGTTTTATTTAAAAAAGGAAGAGTATCTATATCACCAGCAAGTCTGCAGGGTAAAAAAACTATTTATTTACTTTAGTATTTTTTTCTCCATTTGGATGCTACTCAATTATTTTAATTCTTAATTATAAGAAAATATTATAGGAAGTCTTTGAAGATATCGTATCGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 258703-258957 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHN01000002.1 Haemophilus haemolyticus strain M11818 M11818_HUY4654A104_cleaned_ctg_6932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 258703 38 100.0 34 ...................................... TTTTTGTCTGGATGGTATTTGATAGCCATTCTTT 258775 38 100.0 34 ...................................... TATGTTCTTCAACATCTTTATAACCCAATGCTTT 258847 38 100.0 35 ...................................... AATAAACCACGAATTGACATAATAAAATCTCCTAA 258920 38 92.1 0 ....................AC..............T. | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 98.0 35 GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGACA # Left flank : CGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGAGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCCTCAACTGAAATTTACAAGCCTTACAAAATCCCCATCAATTGATTTCTGTATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATATTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGCTAGACATTCTAGAGCTAGAAAAAATAAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTGCTTATTATTTGCTCAAATTAAGAGCCAGCTCCTTAACCTTCCCAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : AGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGAACTTTTATAAATGTTTCACTCTCCGCTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTGCCTAGATAGCCACATACGCGGCGAGTGACAGACACTTTTGTGCTGTCGTGATTGCCACATTTCGGGCAGACGAAACCTTTACTGGTACATTCAAACTCACCGGTGAAACCACATTCATAACATTCGTCAATCGGTGTATTTGTGCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCGCTGGCGAGTGGGGGATATGCCATTTCAAAATCCAGTTTGTCGTAAGGATTCACTTTCTTTTCTA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //