Array 1 1596846-1598216 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023205.1 Escherichia coli strain TUM18781 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1596846 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 1596907 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 1596968 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 1597029 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 1597090 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 1597151 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1597212 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 1597273 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 1597334 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 1597395 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 1597456 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 1597517 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 1597578 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 1597639 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 1597700 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 1597761 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 1597822 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 1597883 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 1597944 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1598005 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1598066 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1598127 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1598188 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1623915-1624799 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023205.1 Escherichia coli strain TUM18781 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1623915 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 1623976 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 1624037 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 1624098 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 1624159 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 1624220 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 1624281 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 1624342 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 1624403 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 1624464 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 1624525 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 1624588 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 1624649 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 1624710 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1624771 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //