Array 1 1097036-1095929 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMF01000001.1 Escherichia sp. TW11588 contig_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1097035 28 100.0 32 ............................ GTTATGGTGCCGGTGGTTTGCTGCATATAAGC 1096975 28 100.0 32 ............................ GTACCCTGGTGAGAAAGACGAGCGCCCGTCTT 1096915 28 100.0 32 ............................ TGTTCATCCGGGAAGCCCCGCGTCTGATACCA 1096855 28 100.0 32 ............................ GGACTTCATCGCAAAACACGCGGTAACGCAGC 1096795 28 100.0 32 ............................ CGTCTTTATCACCCGATCTCCGGTATCGAAAT 1096735 28 100.0 32 ............................ AGGAGGAGGAGCGTAATCGCCTGACGCTGGAA 1096675 28 100.0 32 ............................ GCGCCTCCGCGACGCAATTAACATGGCAAAAT 1096615 28 100.0 32 ............................ GCTCACAATCCCGCGCTCATACCCCCACTTGT 1096555 28 100.0 32 ............................ GGCATGTAAACATCAGAGAGTTGTCTTAATTT 1096495 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 1096435 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 1096375 28 100.0 32 ............................ GGTACAGCTCCAGCATTAATCCCCACCAGCTC 1096315 28 100.0 32 ............................ AGTTTGCTCTGAGCATATTCAAAGCGGTAATT 1096255 28 100.0 32 ............................ TGAGCATCGGAGCAAAAGGACGAGTTATGGAT 1096195 28 100.0 32 ............................ AAAGTGTCCCTTTATAGCCTTTAGCCCGTGCC 1096135 28 100.0 32 ............................ ATCCACCGGGCCTGATGACACGCTTTGCACGC 1096075 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 1096015 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 1095955 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : ATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3381856-3383686 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEMF01000001.1 Escherichia sp. TW11588 contig_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3381856 28 100.0 32 ............................ ATTTGTCTGCGCGGGTCATGCGGGGTTTACCC 3381916 28 100.0 32 ............................ GCAAATCTGGCAATCGAGGCCGCGTTTATTCG 3381976 28 100.0 32 ............................ TTCAGTAACAGTAATATGCGATTCTTTATGCG 3382036 28 100.0 32 ............................ TCGAGGCGACAGAAACATTCTACACGTTAGAA 3382096 28 100.0 32 ............................ GATTGCATCGCGGCGTATACGGCTTTCTCAAT 3382156 28 100.0 33 ............................ GCTTTGTCAGAAGCGGGTGTGTTATTTCCAAAG 3382217 28 100.0 32 ............................ ATTGAGCGTGCAACCGAGCGCCAGATTAACGT 3382277 28 100.0 32 ............................ AGAACGGGAAGGCGTGCAACTTAGGAGAGTTC 3382337 28 100.0 32 ............................ TTGTCTGACGGTCACTGATCGGCACGGTGTTG 3382397 28 100.0 32 ............................ GTAACAATCAACGTGGAGTATAAATAATGTTA 3382457 28 100.0 32 ............................ TTGAGGCTACAGAAACGTTCTACACGTTAGAA 3382517 28 96.4 32 .......................T.... GCAACGTGGACAAATACGGCAATCCTCATATA 3382577 28 100.0 32 ............................ ATAAGGCCCGAACCGTCGAACAAAGACCATAT 3382637 28 100.0 32 ............................ GGAATGGTCGAACGTAACGGAGGCAGATTTAG 3382697 28 100.0 32 ............................ GCTAAAGTTGCCGAGTGTTTGGGCAATGTTTA 3382757 28 100.0 32 ............................ TATGGCTGATAAGCTATGGAACCCCGACTATT 3382817 28 100.0 32 ............................ AGGTGGAAGCAGATAACCGCGTATCGTGAATA 3382877 28 100.0 32 ............................ ACGCCGAAGTGTTGGGCATCAAGGATTCTCCA 3382937 28 100.0 33 ............................ AGCGGCATCGACTGCGCAACGGGGTTCCTGTCC 3382998 28 100.0 32 ............................ GCTAAGGTAGAAGAGAAAGAACCTGAAGTTGA 3383058 28 100.0 32 ............................ GTTTTGATGTATCGAAACTTACCGCTTCTACT 3383118 28 100.0 32 ............................ CAACATCAGCTCCCCGGCGTCGAGCATCTTTT 3383178 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 3383238 28 100.0 32 ............................ AAATCTGATGGGCGGCAGAAGTAGTTTTACCT 3383298 28 100.0 32 ............................ GTACAGCCGGTCGCAGTATCACGACGGGCAGG 3383358 28 100.0 32 ............................ TCCCAGTTCTGCAGATATGCATCCGATACCGC 3383418 28 100.0 33 ............................ GGAGAACGGCGGGAACGCGGTAGCACCAATGAT 3383479 28 100.0 32 ............................ CAGCACGGTGCGTCCATCAAATTGACCGGTGG 3383539 28 100.0 32 ............................ TCTTATTGCCTCTTATCGCCTGGACTGGTTCC 3383599 28 100.0 32 ............................ TGGAAAGGGGCGAGCTTACTGTCAACGACGAT 3383659 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGCACGTTCATCACATGCGGTGCAAACTCCCCGGAGGGGAGAGGGGATGATCCTGAGCCGCTTTTCTCCCTCGCCCCTTAGGGGAGAGGGCCGGGGTGAGGGGAATGATTTCGATTAACGCTCAGTCTCTGACTGAGAAAACTGGAAGCATGCTAATGGCTACAATTCATGTAGACGGCAAAGAATACGAGGTCAACGGAGCGGACAATCTGCTGGAAGCTTGTCTGTCTCTGGGTCTTGATATTCCTTACTTTTGCTGGCATCCGGCGCTGGGAAGCGTCGGTGCTTGCCGCCAGTGTGCGGTGAAGCAGTACCAAAACGCGGAAGACACGCGTGGTCGCCTGGTGATGTCCTGTATGACACCGGCTTCCGATGGCACCTTTATTTCCATTGACGACGAAGAAGCGAAACAGTTCCGTGAAAGTGTGGTCGAGTGGTTAATGACTAACCACCCGCACGACTGTCCGGTATGTGAAGAGGGCGGTAACTGCCATCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //