Array 1 24392-25210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGYJ010000016.1 Klebsiella pneumoniae strain 4928STDY7071685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24392 28 100.0 32 ............................ CGCATAAGTTCGTTCCGGCGGCCGGGGCGGGC 24452 28 100.0 33 ............................ CGAACTGTTCCGCCAGTTGCTCGCTGTGTTCCC 24513 28 100.0 33 ............................ TTAAGCGTCACACTCACCTCGGCGCAGACAACC 24574 28 100.0 33 ............................ TCACCCTGTCCTGCTGGACGTGAAGAAGGTTGC 24635 28 100.0 33 ............................ TAACCCAGATGTTTTCGATAAAAGCGAAGCCGA 24696 28 100.0 33 ............................ CGAAGATGTTCATCCTGACGATAGCAAGAAAAT 24757 27 96.4 33 ......................-..... TTGAGATGGCTCCAATGCTAGGTCATGGAATGG 24817 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 24878 28 100.0 33 ............................ TTTATGGCGACCCCGAAGCCTTTGGGGAGCGAG 24939 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 25000 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 25061 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 25122 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 25183 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33964-35279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGYJ010000016.1 Klebsiella pneumoniae strain 4928STDY7071685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 33964 28 100.0 33 ............................ TCTTTCTGCGAGCGATGCGTGAGCGCCTTCATA 34025 28 100.0 33 ............................ TATTTTGGCTAACTGCACCCGCCTGGTTGAGAT 34086 28 100.0 33 ............................ CATCATCGGGCTTGAGTGGCAGCAGGTCGATAT 34147 28 100.0 33 ............................ CAGCAACCGTGAGCAGAAGTACAACAGGCTGGC 34208 28 100.0 33 ............................ TAATGCGCCTGATCTGGCTGCTGTTCATCGCCT 34269 28 100.0 33 ............................ TGCAGAACGGCTCTTTGACGGACGTTGTGGTAT 34330 28 100.0 33 ............................ CCAGAAAGCCGAGCTCCCGCAGCCGCGTATGCT 34391 28 100.0 33 ............................ TACGGATTTATATACCTCGTGGAACTCGCCTTC 34452 28 100.0 33 ............................ CCTGCGTTGTCAGCTGGCGAATCTCGCCGATCG 34513 28 100.0 33 ............................ CATATTTGCAAATTATTTCCTGATAGGAGAATT 34574 28 100.0 33 ............................ CCAGCGCCGGGTTTGCCGTTGTTGATATATCCC 34635 28 100.0 33 ............................ TACACCCGCCGTGGGAACGACCTGGACACCTAT 34696 28 100.0 33 ............................ CACCAGGCAGGGCGGCGCGGATAGCGTCAGGGG 34757 28 100.0 33 ............................ CGTAACGGGGATAACGAATGCAAATCCTGGCGT 34818 28 100.0 33 ............................ TTATGGAGGCACTTGAGATGAGCAAAGAAAGAT 34879 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 34940 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 35001 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 35062 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 35123 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 35184 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 35253 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 22 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //