Array 1 8092-14030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXDN01000021.1 Xanthomonas oryzae pv. oryzae strain BXO2 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8092 31 100.0 34 ............................... ATAACTCTCTCTCCATATCAGTAGACCCCTACAC 8157 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 8223 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 8287 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 8353 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 8418 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 8484 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 8551 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 8617 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 8682 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 8748 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 8813 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 8878 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 8943 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 9009 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 9074 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 9138 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 9203 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 9269 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 9336 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 9402 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 9467 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 9533 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 9599 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 9664 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 9728 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 9793 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 9858 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 9924 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 9990 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 10056 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 10122 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 10189 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 10256 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 10322 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 10389 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 10454 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 10519 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 10583 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 10648 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 10715 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 10782 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 10848 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 10914 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 10981 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 11047 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 11113 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 11182 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 11249 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 11314 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 11381 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 11447 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 11512 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 11578 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 11643 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 11706 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 11770 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 11834 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 11900 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 11965 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12030 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 12095 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 12161 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 12226 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 12291 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 12357 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 12422 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 12489 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 12555 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 12624 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 12690 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 12754 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 12820 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 12884 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 12949 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 13014 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 13080 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 13148 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 13214 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 13280 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 13346 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 13411 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 13477 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 13543 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 13608 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13673 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13738 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 13803 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 13869 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 13935 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 14000 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 91 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCTTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //