Array 1 201423-203098 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKC01000002.1 Escherichia coli strain G10 NODE_2_length_314040_cov_143.502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201423 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201484 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201545 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201606 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201667 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201728 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201789 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201850 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201911 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 201972 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202033 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202094 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202155 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202216 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 202277 29 96.6 32 ...........A................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202338 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202399 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202460 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202521 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202582 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202643 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202704 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202765 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202826 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 202887 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202948 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 203009 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 203070 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAGATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218600-219177 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDKC01000002.1 Escherichia coli strain G10 NODE_2_length_314040_cov_143.502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218600 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218661 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218722 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218783 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218844 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218905 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218966 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 219027 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219088 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219149 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //