Array 1 4710-2360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZY01000022.1 Herbaspirillum rubrisubalbicans strain Os49 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4709 29 100.0 32 ............................. CCCGAATGTGTTTTAGGAGGCTGCAACGGTTA 4648 29 100.0 32 ............................. CTATTGCGGTGCCGGAAGAAATGCGCGGCAAG 4587 29 100.0 32 ............................. GTTGTTGGCGGTAGGAGCGCTTATGATGAAAA 4526 29 100.0 32 ............................. ACATACGACGGGTAGGGGGCGGAATAGTTGAC 4465 29 100.0 32 ............................. CATCCGGAAGCCTTCCGCCCGATGACCGAGGC 4404 29 100.0 32 ............................. TTGTTTCCACCTAGCCAGTACTCGAAGCGCGC 4343 29 100.0 32 ............................. TTCCCGCTGTGGTCACGGTAATCTGCGCAGAA 4282 29 100.0 32 ............................. AAATCTGCATGGCCCTATGCCTAGCTGCAGCA 4221 29 100.0 32 ............................. TACCATCAGATCAACAGAACGAGCAAGTAGAA 4160 29 100.0 32 ............................. CGAGCCAGAGCGTGGGCGAGTCTATCCGCGTG 4099 29 100.0 33 ............................. CCTGAACTCGGGCGCCACGCTAAAAGCGCTGAC 4037 29 100.0 32 ............................. ATTCCATTTGGGAATCAGATCGCCGGCCCGGT 3976 29 100.0 32 ............................. GCCGACTGGCTCCCAGGTGTTTTCATCAATCT 3915 29 100.0 32 ............................. TGACAGGCGCGCAGTTCCTCGGGGCTAGTCTC 3854 29 100.0 32 ............................. CACGCCGGCCACACCGCCAAGCTACCGTGCGC 3793 29 100.0 32 ............................. TTAAAAGTTGGCGACATCGTTTGCATGAAAGA 3732 29 100.0 32 ............................. TTATTACAAATGTTATGTTGTTTCCCTATTGT 3671 29 100.0 32 ............................. CTCTGCGAGAACGTACAGGAGTTGTTACATAA 3610 29 100.0 32 ............................. AGTAGACGGCAACGGACGATGGGTTTCCAGCA 3549 29 100.0 32 ............................. ATGGCCTATATAACGAAGGGGCAAGCAATATC 3488 29 100.0 32 ............................. TTGTCGGCATCGCGTTGCGGGGCATCGCTGTA 3427 29 100.0 32 ............................. GATATCCACGCCGAACCGGCACAAGTGACAAC 3366 29 100.0 33 ............................. GAAGAGGCGGAAGCAGCGGCACAGGCCGAGTTC 3304 29 100.0 32 ............................. TAGCGCAGCCGATTCATCTCGGCAGTGATGCG 3243 29 100.0 32 ............................. CCAGGGCCGCCACCGGGGACTTGATCCGGTTG 3182 29 100.0 32 ............................. GCCGATCCGACATGCTGGTGACAGGTGGTCCG 3121 29 100.0 32 ............................. CCCGCGCGGTGTGCAAAATGCCGACGCAGGCG 3060 29 100.0 32 ............................. CGTTACGGCTGGCCCGGCGTGGATTATGAATT 2999 29 100.0 32 ............................. AAGACCACCACGGTGGTCAATGCCCTGGACGC 2938 29 100.0 32 ............................. CCATCCCTGGCGGTCCGGCTGACCTGAAGAAC 2877 29 100.0 32 ............................. GTTTCCATTCTGGTCATGCGGACGATCATCTC 2816 29 100.0 32 ............................. ACGGCCACCTCCAATAACCACGTATCGTTTTT 2755 29 100.0 32 ............................. AAGGCCTTGGCAGAATCGCAGGTCAGCTTCTC 2694 29 100.0 32 ............................. CCGTGTCAATGTATGGGCTTGCATCGGGAAGC 2633 29 100.0 32 ............................. AAAAACTAGGATGGTATCCGGGCTTATCACTT 2572 29 100.0 32 ............................. TGGGTAGCGAACGGGCTAGGCACTTAGGCCTC 2511 29 100.0 32 ............................. CTTGCCCTGCGTCTGGTAGGTTTGCGCGCTTT 2450 29 96.6 32 .....................G....... ATGAAACGCGAAGATCAAAGCCGCAAAGTTGA G [2428] 2388 29 93.1 0 ..............G.G............ | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.7 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : AGATACTGGCTGCGGGCGGGCTGCAGCCCCCTGAGTTACAAGGGGTTGTTGAACCCGCGATACCGAATGAAAAGGGACTGGGTGATGCTGGTCATCGTTCTTGAGAATGCGCCACCGCGACTGCGAGGCCGTATGGCGATCTGGCTACTGGAAGTTCGTGCTGGCGTCTATGTGGGCAGCTACAGCCGGAAGGTGCGCGAATATCTATGGGAGCAGGTCGAGGCGGGATTGGAGGATGGTAATGCCGTCATGGCATGGCAAGCGAATACCGAGTCTGGTTTCGAATTTTTGACCTTGGGAAAGAATCGGCGTATGCCAGCGGAGTTTGATGGCGCGCGATTGGTATCTTTTTTCCCTTCCGAGGGAGTGGATTGAGAACGTTTTTGTTACTTGCTCTTTAACAATTTAAGCGATGAATTGTCGGGATAATTTCGCCAGGAAAAGTTGGTGATTTTTTGGGTGTTGAAAAAACTGATTAAAAACAATGACTTGTTTTTAGT # Right flank : TCAACGTTTGCCGTCAGTCTTCGATTGAACGTCCGCGACATCAACAGCGCTTCCACTGCGGTAGTAACGTCCAACGCGGTTGACCAGCGGTACCAACATCAACCAGAACGCATCGATGTCGGTCTCCGAGAGCAGTGGTTCGCTCACCGCAGTGGCGGGGCGTGACATCAACCTCAAGGCCAGCAGCACTTCTGCTGACGACGCAACTCTGATTGCGCAACGTTTCGTGAATCTGCCCACCGTTCACGAAACGTCCCAGGAAAAAATCACCTGGGACAACAACAACCACGCCGAGGTCAAACGTGATAACGCCATCGGCAGCACGGTACAAGGCAAAGAGATCAGCATCACGGCTGATGGTAGACATTTGATTGCGACCAGTCTTGGGGCGCAGGGAAGAGAAGATGGCGGGTACGGCCAATATCCATAACTTTAAATCTGGATCAGTTGCTGCAGACCAGTCAATCGAAGGTGTGAAATCACATCATCATACGTAGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //