Array 1 52-523 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000360.1 Fischerella thermalis CCMEE 5282 contig_360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 52 37 100.0 33 ..................................... ATAGTAGTTTTAACAGGTGAGAGAGGAAACACC 122 37 100.0 34 ..................................... GGAGTCTTAATCAGGATACAGATTATTGGCTAGG 193 37 100.0 32 ..................................... CCACTCCTAAATTGTGAAATGTGATTTTCGCT 262 37 100.0 39 ..................................... TGCAGGGATTGGGGCATGGGCGATCGCATCAAAACTGGT 338 37 100.0 35 ..................................... CCTAAATGACGCAAGGATATTATCCAATAATTGAA 410 37 100.0 40 ..................................... AGGCATGGAGTACCACCTTCCCGTTCTTTGCAGGTAAATC 487 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CTATCAGGGATTGAAACAATTTTGACTTAAATGACGTAAAATAGATATAGGG # Right flank : ATATTATACCTTCAGGTAATCAAAACAACATACATTGTGGTTGAAATCAACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 2749-2048 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000405.1 Fischerella thermalis CCMEE 5282 contig_405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 2748 34 91.9 32 ---.................................. CTGGATACTCTTTGGTACTGGCTGCCGGCATC 2682 37 100.0 34 ..................................... TCTTGTACCGGGATGAATACTACAATCCCGATTC 2611 37 100.0 36 ..................................... CAATTATCGCGATCGCCCTTTTCTCGGCCCTACCTA 2538 37 100.0 36 ..................................... ATTGCCCGTTAAATCTCTCCAAGCTTTGTCTATTAA 2465 37 100.0 37 ..................................... ATCATAACAGAGCAACCATCCTATGGAATTCCTTCTG 2391 37 100.0 34 ..................................... TTATTCCTTCTAAATCTGCTTCCTTCAAGGTATT 2320 37 97.3 40 ....................A................ GTCCAAAAGACCGCCATTTTCAAAGATTAATTGCCCATAC 2243 37 81.1 119 ..............A..........G.C.GC....TT TGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGAT TT [2213] 2085 37 81.1 0 TCA.....GC....A.....T................ | C [2075] ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 9 37 94.6 46 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : TTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATTCAATGACTTAGGAATGTGATATTGAAAATTTCTAACTCAATTGTGCTACAAGTTGATTTTCCAATAGAGTTTCATTTGTGAGTAAATCCTCAACGGTGATTCGCAAAAAACGCTGTTCATCAACTAAAAACAGGATTTTAATTCGATCGCTTCCGGGAAAACCTGGTGGTGTAAGTTTAGCAATTGTCCTCGCCCCATCTCTATCATTAAGGGGTTTGACAGTGGTGACATCGTTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTACCACCTGTGTCTGACCCCAATTCACCCATAATTAACTCAATACTGGGCTGATTCTCTACAGAAGCACCCAAAACTAACTGTACAGGCTGAGTCATGGGATAAGGTTGCCCCTCTC # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:-1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 32173-31992 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000131.1 Fischerella thermalis CCMEE 5282 contig_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 32172 36 100.0 37 .................................... GTCGCTCAAAAATGAAGTTAATTTTCGTTAGAGAAAA 32099 36 100.0 36 .................................... CTCCCACTACCTCTAAACTAGCTTGCCTAATTTTTT 32027 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : AATTCCACCACCAGCGAGAGCAACCAAATGTCTGCGCCAACAGTGTTTCTTGCTCTTTCGATGGGTATAAACGAACCTGAACAGCTTTATGTAGCACCCAATATCACCTCCTTGATTTATATATCTTGCTACTATCTACAGTTATCAGTAAAGTAAAATTAGAAAAAATATTTGGCTACTCCTCATACATTTTTTTCTCGGTCTTCCCGTAGGGAAGAATTGTTCAAAGATGCAATTGTCGCAGCCCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGCGGGGGACGAGGGTGCGAAAGAGTTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : TTTAAAGATTGCAGTTTCTTAAGTGCCTCTTCTACATGACCTTTAAAGTTGAATTGAGAGTTGAAAATGTGCTGTACAATTCCATTTTGATCAATCACGTAGGTGACACGACCAGGAAGAAGACCAAGAGTCGTCGGGACACCATATAGTTTGCTAACTTGGTTACTTGTGTCACTTAATAATATGAAGGGCAGCTGGTGCTTGTTCGCAAATTTTTGGTGAGACTCTGGGGAGTCGCCACTAATGCCAATAACCTCAGCACCAGCATCCTGGAAGACTTCATACTGATCTCTGAAGGCACATGACTCTGCTGTACATCCTGGCGTATCGTCCTTCGGATAGAAATAAAGAACGACACATTTGCGACCGCGATAATTACTGATGCTAACTAATGAACCAGACTGGGAGGGCAGAGTAAAATCGGGAGCAATATCTCCAACTTTGACTGACATATGTGTTGAGCAAAAAAACTTAATATATATGACCAATATTTAATTATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 59-1119 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000052.1 Fischerella thermalis CCMEE 5282 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 59 37 100.0 36 ..................................... GAATGCCTCAAAGTACCTCATCCCAAAAGTCCGCAA 132 37 100.0 37 ..................................... CCCCAGGAACGTATAGCGTAACCATAAAAAGCAAAAA 206 37 100.0 34 ..................................... ACCCTTATCAAAGATGTCTCCCCAGCTGCTTATA 277 37 100.0 47 ..................................... ATCACCTCCTGCTTAAAGAAAAAGAAGTGCCCAAGTGCCCAACAAAG 361 37 100.0 37 ..................................... ATCACCTCCTGCACACCAGGAAGCAGTATTTCGGTGC 435 37 100.0 33 ..................................... ACTATATAAATGTGAGGCAAAGCGCCAAACAAG 505 37 100.0 36 ..................................... ATATCAATGATTCGTTTAACCGAGGCGGGTGTGTTG 578 37 100.0 34 ..................................... CACCTAAGTAAACATTCATCATACTCATAAATGA 649 37 100.0 37 ..................................... ATGATATTGTTAGATACTGGCGATCTGGTAAGTTTGC 723 37 100.0 35 ..................................... GGCAGCTCGTATACTTTGCCATTCACCCACATACC 795 37 100.0 33 ..................................... CGGAGACGGCAGCCAAGGTGTAGTGGCGACAGG 865 37 100.0 36 ..................................... TTTGGCACTACCTAGCTGCACCTCTGCCTCGTAAAC 938 37 100.0 35 ..................................... TGCGACATCGAGGACTTGGACAAATTATCCAGTCC 1010 37 100.0 36 ..................................... TGGTTCGCCAACGCCGAAAAGAAGCGATACGCATCT 1083 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 15 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTATTAGGGATTGAAACGTTCGGATTCGAGATGCGCCTCAATGACCTCTAGCGTTGCG # Right flank : TTTGAGCTATCGCACCAATTAAGACTTTTTTGCGTCGTTGCAACTTAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 6260-6803 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000053.1 Fischerella thermalis CCMEE 5282 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6260 37 100.0 34 ..................................... GAGCCATACCGGAGAGAAAGCGATCGCCCAGAGT 6331 37 100.0 40 ..................................... TAAAGTAAATTTCTAGGTCTGAAGGATTCATCAGTATTTC 6408 37 100.0 32 ..................................... AAAATTGGCATACAACACGCTTCTTATGACAG 6477 37 100.0 36 ..................................... ATCGCAGAAGAAAAGCTTGGAATGGGTGATCATAAC 6550 37 100.0 31 ..................................... AGGATTTAGGGTGATTTTTACCTCTTCGGGA 6618 37 100.0 37 ..................................... AAGACGCAATGCAGAGTGATGCGATCGCGCTTGTTGG 6692 37 100.0 38 ..................................... GGCGATCGCGTCAAATGCTATGTCTGTCATCTCACGTC 6767 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTGCATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGTCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 14675-15282 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQC01000015.1 Fischerella thermalis CCMEE 5282 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 14675 37 100.0 34 ..................................... GGAACCTCGCTTTCTGTATCATTTAGAACCGGAA 14746 37 100.0 34 ..................................... AACTTCTGTGCCCAATCCATCTGGAACGATCACA 14817 37 100.0 37 ..................................... TCTGATTAAATGCCTCTTCTATGTAATGGCGCTGGTG 14891 37 100.0 34 ..................................... CCTGCGGGGGAAGGGGGGACAGGATTTGGGGATA 14962 37 100.0 33 ..................................... TGTGATGGCACCTGCGCGGGCTTGAGCTAATTC 15032 37 100.0 35 ..................................... CTAGCATTGCGGCGATCGCATTTTGGATAGTTTCA 15104 37 100.0 34 ..................................... TAGAGAAACGGGGGCAAAAGCTGCTGATAAATTG 15175 37 100.0 34 ..................................... TAGTAACTGGTACTAGCAGATCAATCACCCTAAC 15246 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 34 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : TACCAGTTACAACGAAAATCAATTACTACCAGAATTGTTGAAATCAACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //