Array 1 61343-59606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSIY01000014.1 Escherichia coli strain upec-269 upec-269_ctg_1370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61342 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 61281 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 61220 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 61159 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 61098 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 61037 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 60976 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 60915 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 60854 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 60793 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 60732 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60671 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60610 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 60549 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 60488 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 60427 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 60366 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 60305 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 60244 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 60183 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 60122 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 60061 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 60000 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 59939 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 59878 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 59817 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 59756 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59695 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59634 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87774-86890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSIY01000014.1 Escherichia coli strain upec-269 upec-269_ctg_1370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87773 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 87712 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 87651 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 87590 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 87529 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 87468 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 87406 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 87345 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 87284 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 87223 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 87162 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 87101 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 87040 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86979 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 86918 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //