Array 1 20134-20862 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIG01000004.1 Fusobacterium varium strain AM22-17 AM22-17.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20134 29 100.0 37 ............................. CTATTAAGCTTAGGGGTATTATTAAATTTTTGTGCTA 20200 29 100.0 36 ............................. CTTATAACGCAGTCCAATCTTTTATCTACAAGTTCT 20265 29 100.0 37 ............................. TAAAGAAAGAACATATGATTTTGTATCAACCAGACAG 20331 29 100.0 35 ............................. AAAGAATTAAGAGATAAAGCTGAAATTTTAGATAA 20395 29 100.0 36 ............................. ATCCCTAACTCCTTTCTCTTATCTATCCATTCTCTT 20460 29 100.0 36 ............................. TATGTAATTAGATTAAATTCTTTTGCTGTTATGATA 20525 29 100.0 37 ............................. CAAACAACTGGGATATCTACATAAAGATTTCCCATAA 20591 29 100.0 37 ............................. AAAATAAAGAAGTTTTTAAAAGTGCACAAAATAAAAA 20657 29 100.0 35 ............................. TAAAGATTTATTAAAATATCTCTAGTATTAAGATT 20721 29 96.6 21 ...............G............. TCGATATATCAATTGCTCCAA Deletion [20771] 20771 29 82.8 34 A.......TC....G.T............ ATACTTTTCCATCAAATTCTTTCTCAGCAGTAAG 20834 29 82.8 0 A.......TC....G.T............ | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 96.9 35 CTTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : GAATTGTATTCTCCCTTTTCTCTCATCTCTCTAAAAGTAGTTATTCCTATTATTGGTTTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTCTAGCGAAAGTTTTTACAATACAGAATTGAAAAATAATCTCAATATATATTTTCACATATAGCTCAATTTTGAAATATTTCATATTATTTTAATAAAAACAAACAAATTTTTCTAAACTTTTTAAATTTTTATTAATATAGTTAGGCAATTACAATATAAGAATTTTGTTATATAAAAAATAAATTACTTGTATATTCCTACAACATTATAATTTTTATTTTCCAAGTTAAAAATTGTATTTTTTACAATATCATTCTTTAAGATTATTTATTTCAACATCAGTAATTTATAGTATGTTTGTTGGAATTTTTTCACTTAATATGTTATAATTTGTACATTAGCAAGCAATAAAATATTAAGAAAGTTTAAATTTATGACC # Right flank : TTCTTCTAAAAGAAAATTCAGAACTTTCAAGAGTTGTAATTGAATATCAACTGATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGCTATATCTTCAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATGTTAATTATTTATTATTAATTACTTATTGAATAAAATATCAAGCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACTGGAATTAATGGATTATAAATACAATGCTGAAACACATCTACATCTTTTAGTAATTCATCATATTCTGAATCTATCCTTTCCTTATTACTATGATTGTGAATGGCTGTACAGATTATATCAATTTCTGTAGAAGTTGCCACCTGTAATTTTCTAATATTTCACGAGCCATAATTGCTCCTTTTTGTCCATGATCTTTTGAATATTCAAATTTATAAGTATATATATCATGTAACATTCCAGC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 31621-32300 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIG01000007.1 Fusobacterium varium strain AM22-17 AM22-17.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31621 29 100.0 36 ............................. TGGACTTTACGGAAATACTGGAATATTTGAAACAGA 31686 29 100.0 37 ............................. AGTATATAATGAAACTGGAGGAATGCTTACTGAAGAA 31752 29 100.0 36 ............................. TTAGCAATATCTAGTTCCATAAATTCCTCTTCTACT 31817 29 93.1 36 ...............A.A........... AAAAATAAAAAGAAAATAATTTAAAAGAGCTGAAGA 31882 29 93.1 36 ...............A.A........... TTTTTGGAAAGAATATCTTTTACAGCTTCTGTTGCC 31947 29 93.1 36 ...............A.A........... CAGAAAAAACTATCTTTATCTATTAATTCTAATTTT 32012 29 100.0 36 ............................. GTATTTTCCCATCTATAGCAAATCTATCTCCAGCTT 32077 29 100.0 35 ............................. TATTCTCCTTTAGTAAATCAGTTACTATCAGCTCC 32141 29 100.0 36 ............................. CCTTCATTTTCAATAATCTTTTTACAAATAAAAATC 32206 29 93.1 37 ...............A.A........... TGAACTCCTCTTACCTCTAGTGTAAGTTTTCCTAATG 32272 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 97.5 36 GTTGAATAGTAACTTGGTAGTTTTTAAAT # Left flank : ATGTGGCTGGGAAGTTTTATTGCTAAGTATATTTATATGAGAATAAAGTTTTTTATAAATAGAATAGGAAGTAAAGGAGAGCAAAAAGAATACAAGATTATAAAAATGATTATAGATCAGAAAAGATATTTTAAAAAACCTGGAAGCAAATATTATATTAATTTTTATTATTTAATTGCTGATGTAAATGGAGAAGAGGTAAAATTCCTTATAGAAAAGGAATTTTATGATAAGTATTTGGGAAAAAAGAGTATGAATATTAACATAAAAAAAGGATCACTTGGAATTTTTTATGGAATAAATTTAGTAGATTTAGAAACTAAATAAATTTTCTAAGTTAAAAATAGTACAATTTTTTCTAAGCTAGATTTCAAAGTAAATTGAGAAAGAAAAATTTGTTTGATAAAAAGTTTGATGAACTTGGAAAAATAAAGATAAAATTTTGGTAAAATTATGGTTTAAAGATGAAAAAATAAAAAATGAAGTTTAGTTTGATGAGG # Right flank : TAGCAAAGTCGAGAGTCTTTATATGATTGATTTTACAGTTGAATAGTAACTTATAATAAAAATTTTAAAATGATAGGAGATGATAATCTAAATAAAAAAATTCTTTTAAAAAATTAAAAATTTTAAATTAATGACTATTATTTATTAAAAAATGAGGTATAATTAATATTAAGTATTAAAAAGGAGGGATGAAATGGAAAGTTGGGTTTTAGAATTAAAAGTTTTTTTATTGGAAGATATAGAATCACATAGTGCTATAGAAAAAATAGCAGCTTTTATAGATTCTACTTTTGATAAGAGCGAATATTGGAAAAAATATCATAAAGAGAAAAAAGTAAAAGAATATTGTTTTAATTCTTTCTATCCGGTAAAAGTCAATGCCCAAAAATACAATGCTGGAGAAATATATACAGTTCAGATACGAACTATTTCTAAGGAATTGAAAGAGCATTTTATGAAATATTTGAAAGACAATATAACAAAAGAATTAAAAGGGCTGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTGGTAGTTTTTAAAT # Alternate repeat : GTTGAATAGTAACTTAGAAGTTTTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 41261-42002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIG01000007.1 Fusobacterium varium strain AM22-17 AM22-17.Scaf7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41261 29 100.0 36 ............................. CCTTTAAATTTAGAAGTAATAACCCTTTCAGCTCTT 41326 29 100.0 34 ............................. ATCCTTCCTTTGTCCTCTCTCTGAGGTCTAGCAC 41389 29 100.0 37 ............................. GTTTTATGGATTAAAATTAAATCATTTTCTTTTAATA 41455 29 100.0 36 ............................. GAAGTAGTAGGAGATACAGACCTTGAAATAGGAGCA 41520 29 100.0 35 ............................. AGCAACTCTTTAAACAGTGCTGAAGATACTAAAAA 41584 29 100.0 36 ............................. TAGCCTATTTCATTAAGTTTTCTATATATAGCTTTT 41649 29 100.0 34 ............................. TATATTTAAAATTGCAGCTCCTATCTTTGACAGA 41712 29 100.0 38 ............................. GAAAATTCAATTGATAGTAGATATTTTGGGTTAATTAA 41779 29 100.0 36 ............................. TATCCTAGACTTAATACATCTCTTCCTCCATTAATA 41844 29 100.0 36 ............................. ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA 41909 29 100.0 36 ............................. GCCGTTGGATATGCTGCTGAGAATGAAAAACTGTGT 41974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 36 GTTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : GAAAATAAAGAATTTATTCCATTTTATATGAAGGAAAAGATGTAAATGAAAGGTAAAAACTATAACTATGTATTTCTTTTTTATGATATAAATGAAAAAAGAGTAAATAAAGTTTTTAAAATTTGTAAGAAGTATTTAAGTCACCACCAAAGATCTGTATTTCGTGGAGAAATAACACCTAGCAATTTAATAAAAATGCGATTAGAATTAAAAGATGTTATTGACAAAAAGGAAGATTTTATAAGCATTGTAAAATTGATAAGTGAGCATTATTTCGATGAAGAGATAATAGGAACACCTTGGAAAGATGACGAAAATATATTTATATGATTTCCAAGTCCAAAAGCTAATAATTTTATCAAATAATTATTTTAAAAGGGATTGAGAAGAAAAAATTTATTTGATAAAAATTCTAGTAAGCTTGGAAAAATAGAAAGAAAATCCTGATAAAATCATAGTTGAAGATATTAATTAATAATAACGAGCTTGATTTGATGAGT # Right flank : TAGAAAATATTATATCGTTGCACATGTGCAATGATATGATAGAATATAAATTTATTAACTAAATATAAAAAACAGGCTAAGAATTTTTCAGCCTGTTGTTATGATATTAGCAGTTCCTAAAAATTGATTTTTAAAGAATAAGTATAAAATATCAGTATCTAAAGGATTGTATTTAACAATAACTTTTTTTCCTTCCAATGTGGTTAAAAAATTATTTGTATAGATAAAATTATTAAATCTTAAAGAAGACTTACTTATTTTTCTGCTGGCTTCCTGAAGAAAGACATCAAATTCACGAACATTTGAAATATTTTCTACCATTCCATATTTGAGTGTAAAGTCATATTTTTGATTATCTAAATAGATATATGAATCAAGAAAACTTTTCAAATTCTGATATGAAAGATTTTTATTATTTTGGTAATAAAATTTTTCTATATCTTCTTCTAGAAAAGAGATAAACTTTTTAATTTCTTCATTCTCACTAAAATATTCAGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //