Array 1 2607379-2607955 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGLD01000001.1 Klebsiella pneumoniae strain NCTC8883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2607379 28 100.0 33 ............................ CCATTCTCAGAGCCAACGGGGCCGACTGTAAGC 2607440 28 100.0 33 ............................ TAAATGTTTCTGCAATCATCAGTTTCTGCCTGA 2607501 28 100.0 33 ............................ CGTTACCTATGCCGGAGCCTATCAACCGGGACG 2607562 28 100.0 33 ............................ CAGTGCTTTCAGAGCGCGCTTGATGCCGAGATA 2607623 28 100.0 33 ............................ TATCTCTTCACCCCTACAGTTTGAGAGTGATTA 2607684 28 100.0 33 ............................ TCACTGAGGTTGAAGATGCCACTGTTAACGCGA 2607745 28 100.0 33 ............................ TCGTCAACGGCCGGGTTAAGAGTTTGACCCTCG 2607806 28 100.0 33 ............................ TAAAGGAGCACCAGAACTGCACGGTACAAGCAT 2607867 28 100.0 33 ............................ CGATGGTCTATGCGCACCTGTCGCCTGACTACC 2607928 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAGTTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGAGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTCAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCTCAGATTCAGGTTATGTCGCTCAATGCGCTGAGTGTAACGCTTGCTGATAACGTGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2617486-2619343 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGLD01000001.1 Klebsiella pneumoniae strain NCTC8883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2617486 28 100.0 33 ............................ TAGCGCCTCTTGCTCACGTTCTGACATTCCGCC 2617547 28 100.0 33 ............................ TCATCCCTTCGCGTACAAAAACAGCCAGCATTC 2617608 28 100.0 33 ............................ TGGCTAAAAGACGCGCCATCACAGCCGTTGCAG 2617669 28 100.0 33 ............................ TATGCAGCCTTTCAGGCGTTCTGCATCCCTACA 2617730 28 100.0 33 ............................ TGCCATAGGGTCAATCCTTACGGTAGTGATACG 2617791 28 100.0 33 ............................ TATAAGCCTTCGTACCCGTGAATATCTTTCCAT 2617852 28 100.0 33 ............................ TCGCAGACCATACCCTCCCGTCAACTTCACTGG 2617913 28 100.0 33 ............................ CATTGCGGTTCCACGCACCGATATGGCCGGCAT 2617974 28 100.0 33 ............................ TACCCAGAGAACACCCATGCAATACCCATTGAC 2618035 28 100.0 33 ............................ TGCTGAAAAGATGAAGAACTACGGCATGACCTC 2618096 28 100.0 33 ............................ TGTACAGGCGGCCAGTTAGTGCGGTTGCCTGAG 2618157 28 100.0 33 ............................ TTTGTCAGTCATGGTCTGTCCGTCATCGGTTCT 2618218 28 100.0 33 ............................ TGGATATTGCGTTGTTAGGCTGAGTGATGCTTC 2618279 28 100.0 33 ............................ TCATCCGCGTTCACGCCAGCAAAGGTAAGTATG 2618340 28 100.0 33 ............................ CGAAGGTTCTCGGGTTGACTGGTCTCCGGTTGG 2618401 28 100.0 33 ............................ TCGTTTGCGAGTGGCGTTGAACAGGTCAATCCA 2618462 28 100.0 33 ............................ CCTATGACCTGATGACGGTGAGCATTGGCAAAG 2618523 27 96.4 33 .....................-...... TTATCTACCCAGGAACTTCTTGCTTGGCAGTTT 2618583 28 100.0 33 ............................ TACATTTCCACTGACCTTACCGCGCCAGCGGAG 2618644 28 100.0 33 ............................ TGTTGTTCAGTCGGAATCGTATATGACCTTTAA 2618705 28 100.0 33 ............................ TACTGCGCCGACTTGCGCTCTGTGCTTGATATA 2618766 28 100.0 33 ............................ CATGTTTGAGCGCGCAAAAACCGCATCCGGATT 2618827 28 100.0 33 ............................ TTTGCCATGCAGGAACTGGAGAAGAAGCGCGAA 2618888 28 100.0 33 ............................ TACATCACCACGCAGTGCCTGAAGTAAGGCATT 2618949 28 100.0 33 ............................ CGCCCTGACAGGGATTATGCTGAACGTAACCCC 2619010 28 100.0 33 ............................ TTTGGTGTTCAGATTACCCGCCAACAGGTTGAG 2619071 28 100.0 34 ............................ CAGGGATCCGGTCTGGAAACCGGGTGATTGGCTA 2619133 28 100.0 33 ............................ CTTATCGCGACGATGGACACCTTTTTCTGGATG 2619194 28 100.0 33 ............................ CCAAAGAGCTGGCAGGTCAGTGGCTCGCATTCG 2619255 28 100.0 33 ............................ CAAGGATAGTGGCATCGACAAGCATAAGCAGGA 2619316 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCTCAGATTCAGGTTATGTCGCTCAATGCGCTGAGTGTAACGCTTGCTGATAACGTGCAGCTTTCCCTTCAGGCGTGATTCATAAAGCGGCCAGCCATCCGTCATCCATACCACCACATCAAATACCGACAGCAGCTCCAGAAGACGCTCCAGTGTGGTCAGAGTACGCTCACCAAAGACGTGTGCCACCACCGTCCTGCGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //