Array 1 192759-191625 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXIZ01000001.1 Klebsiella pneumoniae strain Kp15 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 192758 28 100.0 33 ............................ TATCTTCCCCGTCTTTGTCGTCCCACAGAATTG 192697 28 100.0 33 ............................ CATATCAAAGTAGATTGAAATATGCCCTATTTT 192636 28 100.0 33 ............................ TGCCGCGCCCTCGTGAGTTCGAGCAGATCCTGC 192575 28 100.0 33 ............................ CGAGGAAATGATCGCCATTGACCGTAAGGCGAT 192514 28 100.0 33 ............................ CGATGCGCAGTTTTTGGAGACGCGAAAATTCCA 192453 28 100.0 33 ............................ TTTACTCGAAGGTTAAGCGGGCGTAATATCCTC 192392 28 100.0 33 ............................ CGGTCAGCACTTCCAGAAAGGCGGATATTCCAC 192331 28 100.0 33 ............................ TCTGGCGCTGCCGTTCCTCTTCGGGTGAGAGGG 192270 28 96.4 33 .G.......................... CAAGAGAACGTGAACGGTCTGCCGTCTCCGTCC 192209 28 96.4 33 ...................A........ TGCTGATTAACTGGGCCATGTCCACCTGTGAGG 192148 28 100.0 33 ............................ TACGGCTTTATATACCTCGTGAAACTCGTCTTC 192087 28 100.0 33 ............................ TTAAAAAAGGCCGCCATATGGCAGCCTGATGGG 192026 28 96.4 33 ...C........................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 191965 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 191904 28 100.0 33 ............................ CGGGCTGCAGGCGCGCGCGTCCTCCGACCTGGC 191843 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 191782 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 191721 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 191652 28 89.3 0 ......A...T.T............... | ========== ====== ====== ====== ============================ ========================================= ================== 19 28 98.9 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTAACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202211-201512 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXIZ01000001.1 Klebsiella pneumoniae strain Kp15 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202210 28 100.0 33 ............................ TCCGGCACCACACTGGTGAGCCTGCTGGATTCT 202149 28 100.0 33 ............................ CCATTTCATAGTTAATCCTGGTCTGACAGGACT 202088 28 100.0 33 ............................ CAGCGCGTCGGTTTCTTCGCGTTCGATGCTGCG 202027 28 100.0 33 ............................ TACGCGCCGCTGTCACCATTTCCGCTGCTCCCC 201966 28 100.0 33 ............................ TAATCCGCAGCTCCGCGGGTACCAGGTCGACAG 201905 28 100.0 33 ............................ TCAGCTGGGCGTTCGTCAGCAAACTGGCAGCAA 201844 28 100.0 33 ............................ TATCATCTCATCAGAGAGCTTCATCGGCGACGA 201783 28 100.0 33 ............................ TATGGCTGCCGACTGACGGCGACGCCGAGAACT 201722 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 201661 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 201600 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 201539 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGAGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //