Array 1 5868-7945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHK010000074.1 Fusobacterium sp. DD4 JD13_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5868 36 100.0 30 .................................... AATTTCAGCAATCGTAAACAGGAGAATATG 5934 36 100.0 30 .................................... GTGCAGCTGATATTCTTGCAGCACTATCCA 6000 36 100.0 30 .................................... TCTTCCCATGCCTAGGTGGCATATTTATAA 6066 36 100.0 29 .................................... ATTTTTAAATATTGTATTGTCTTTTATAA 6131 36 100.0 30 .................................... ATGGGACTAGAAGGGCTATTTGATAAGGTT 6197 36 100.0 30 .................................... CTTAGGAATAGCGGAGACAGAAGAAGAGAT 6263 36 100.0 30 .................................... TTACAAGAAAAGAAATTGATAGTTAAGGTT 6329 36 100.0 30 .................................... TGCAAGAGATAAGACCTAATCATTATAAGT 6395 36 100.0 30 .................................... TGGTATCAAAGGGTTGTTGTAAACGGAGAG 6461 36 100.0 30 .................................... GATGTTACAACTAGAAACCCTATGAAAGGC 6527 36 100.0 29 .................................... TATAGATGATATTCCAAAAGTAAATAAAG 6592 36 100.0 29 .................................... TAAAAAAAGAAAGTCTTTCGTCTGCCGTT 6657 36 100.0 30 .................................... ATTTGCATCCAAATATGAAAAGAGTTCGTT 6723 36 100.0 30 .................................... TGGTAAATATAAAGGAAGAAAACCTATTAC 6789 36 100.0 30 .................................... ATTGAACAATATTTTGAGATTAAATTCAAT 6855 36 100.0 30 .................................... TGACACTGGGATAGAATTCCCACAGATGTA 6921 36 100.0 30 .................................... TTTTGCCCAAATAAACTACTATTATCACCA 6987 36 100.0 30 .................................... AAGAAGCTCTCTAAAAACCACATATCAAAT 7053 36 100.0 30 .................................... GCAAAAGTTGTTTTTCCTGTCGAAGTACCT 7119 36 100.0 30 .................................... AAAGGTGATAAAGTTTCCATAGCTTCAGCA 7185 36 100.0 29 .................................... TAAATTAACTTCTTTAAACTGTTCTTCCC 7250 36 100.0 30 .................................... AAACTAGTTAGATTATCAATAGAAAGTTAT 7316 36 100.0 30 .................................... AACATTCCTTGGCTCTAAGTTTGTTGGTAG 7382 36 100.0 30 .................................... GGCTTCTTGAATTATGGCAACAATCAGCTA 7448 36 100.0 30 .................................... GTTGTAATCTTAATTGACTTATTACCAACT 7514 36 100.0 30 .................................... CGTTCCTAGGTATTATGGAATATGAGAGAA 7580 36 100.0 30 .................................... AACTCAACTGATATTCATCCACATGTTTAT 7646 36 100.0 30 .................................... GTAATGCATCTGGATTACGAGGGCTAATAG 7712 36 100.0 30 .................................... TTGCTTCAGGGCTCACTATTACATCCTCTA 7778 36 100.0 30 .................................... GAAGATGGAACAAATGAACTTGTCGGAGTT 7844 36 100.0 30 .................................... TAATAATTTTATGCAACTATATAACCACCT 7910 36 94.4 0 ...............G..................C. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.8 30 GTTTTAGTACCTTGTAATATTTGAGTATGGTAAAAC # Left flank : TTGTATTTCCAGAAAATAAAATTGCTTTAAAGGATATGCCAAAATTGCGAAATTTTTTGTTTGAATTGTCTAAAGAGAATAAAGTAATAGTGGCAACTTTTTCTAAATATCTTTTTGATTTTTCAACTTTGGATAATATTAATATTTATATTAATTCAAAATTAGCAAATTCTTTTACAGAAGATGAGATAATAAACGAAATTTATGAAAATTATCCGGTATTGAAGTCAAAAAATGAAATAAATGCTCTTCTATCTTTTGTATTAAAAAATTATTTATCTGATGTTTTACTTGGAAACATAATTACTAATAAATTTTTCTGTGAATTAGATAATGTTTTTATTGAAAATTATGAATTTATCTTCTTGCTCCTTTATTATTTAAAAAAGATAAGATTGAGTTATAAACTTAACTTGAACTATGATCCGACCTCTCCATTTTCGAACTATATAGAAGAAAAACTTTTAACATAATGTGATATATGTTAGAATAGATTTGAG # Right flank : CCAAGGAAAAAAGGTTCAGAACTAAGCGTCTGAACCTTTTGTTATTTTTCAACTATTAAAGAATAATCTTCTGGAGTATCTATATCTAAGAACTCCTGAGAATATGGAAAATCAACAAGAGAAACAAGTGGAGTATTTCTAATTATATTTTTTCCACCATGGTCACCTTGAAGAGCAAGAAGCTCTTCTTTTTTACTATATGGAAAGAATACAGGTGAATATCTATCTCCATTACTTGTTGGAACAGTTATATATCCATATTTTTCAAAGTTATAATAGAGTTTTGAAATAGTATCTGGTGTCAAAAAGACCTGGTCACCAGTAAAAAATACAAAACCTTTTCCTGAAGAGTTTTGAACTCCTAATTTAATACTTTCACTCTGTCCTAAATTTGCTTTGGTGTTGTGAAGATACTTACAATTATATTTTTTACAAATATTTTCAGTCCAGCTGTCCCTTCCACATACCAGTATTTCAAAAAAGTTGGCGAAATTAAGTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACCTTGTAATATTTGAGTATGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 20784-22517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHK010000012.1 Fusobacterium sp. DD4 JD13_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20784 30 100.0 36 .............................. ACTGGTTCTCCATTTACAAAAGCAGGACCTTTAAAC 20850 30 100.0 35 .............................. TCACAAGGAACTTTACACCAAAATTCAAGGTTTTT 20915 30 100.0 35 .............................. TATGAACTTGAATTAGTTAAAAATGTTTCAGCTGG 20980 30 100.0 36 .............................. TGCCAGAATTTAGGCTTATTGAGCACGAAAAAACGG 21046 30 100.0 36 .............................. TCTTTTCCAAACTTTTCTTCTGTTATTTTTTCAAGC 21112 30 100.0 35 .............................. TGGCAGTTAATATCTTTTAAATCCTTATTATAAAA 21177 30 100.0 36 .............................. TCACTTCCAAGCCAAACTGCACCAAATGAACCTCTT 21243 30 100.0 37 .............................. AAGGATTGATTATGACTTAGATGATGATTTGCTTGAG 21310 30 100.0 36 .............................. TCATCCGAATTAGTCATCTCATCTGTCCACCCCATC 21376 30 100.0 35 .............................. CAAAAATACAGAAGTCTTTACAATACTGATGGAAT 21441 30 100.0 35 .............................. GGGCCGTTGTTTATTATTTTATCCCCATCAATCCA 21506 30 100.0 36 .............................. TCACTTCCAAGCCAAACTGCACCAAATGAACCTCTT 21572 30 100.0 36 .............................. TTTTTTAATTCATCCTTTTTATAATTTTGGAATTTT 21638 30 100.0 36 .............................. AATCTACAAAACATATAGATTTATTGAAAGTTATTG 21704 30 100.0 36 .............................. AATTAAAGTTTATAAATAATTTCAAAACTAAACAGA 21770 30 100.0 37 .............................. AGTTATACTTCCAACGTGTTGAAGAGAGCAAAAAAAA 21837 30 100.0 36 .............................. TATTCTATTGATTTAGGGGAAAGAAAAAACCCCTCT 21903 30 100.0 35 .............................. GTGAAACGGATCACTCCTGGGGGTATTCAAAAAAA 21968 30 96.7 34 .A............................ TAAGTGAAAACGCCCCCCTTTACAAAGTGTTTAC 22032 30 100.0 35 .............................. AACTCCATAGGTATTATAACATACCTCAAAAACCT 22097 30 100.0 37 .............................. GCTATTACTCCTCTTTCTCTAATATTCCCTATATCAA 22164 30 100.0 35 .............................. TATTGTTATAATAGCTTTTGTAAGTTGTGTTTAAA 22229 30 100.0 35 .............................. CTTAAAGCAGATTTTAAACCAACAGAAAAAGAAGT 22294 30 100.0 34 .............................. TAAACATACTTGATACAACTGCATTCATTAGTTC 22358 30 100.0 35 .............................. TTTAGAGTTTTCAGAGTCTCCAATGTTTCACTTCT 22423 30 100.0 35 .............................. GTAGTAACACGAGGGCTCTTTAGTTTATCAACAAA 22488 30 93.3 0 ..............CA.............. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.6 36 ATTGAATAATTACATTGGTAGTATTTAAAT # Left flank : AGAATTCTATCCTTTTAACATCAAGGAGAAGATTTAATGAGTAGGAATAGATATAATTTTAACTATATTTTTCTTTTTTATGATGTAAATGAAAAAAGAGTAAATAAGATTTTTAAAGTATGTAAAAAATATTTAACACATTATCAGAGATCTGTTTTTAGAGGAGAAATAACACCAGGTAATCTTCTAAAATTAAAAAATGAGGTAAGGAAAGTTATTAATGAAAAAGAGGACTCTGTATGTATAGTCAAATTTATAAATGATAGGTATTTTGCAGAAGATACACTAGGAGTGCTATGGAAAGAAGATGAAGATTGTTTTATATGAGTTTTCCAAGTGGAAAAATAAAAAAAACTTTGAAATCCTCATAAAATAATTGTTTGCAACGAAAAATATAGAATGTTGAAAATTTGATGTGAGGTTGGAAAAAAATTGAGGCATTCCTTAAAATATGGTATATTGAAAGAAAGTTGTGATTTCAGAGTAAGCTGATTATGACC # Right flank : TATACTTCACCTAAAAACTTACACAACTAAGAAGGACGGTGGAGTTTTTTAGTTTTAAGAACAGAGATTATTTTTATTCTAAAAGAGGCCTATATGTGGTATAATTAAAACATTGAAATAGAAGTAGGAAGTGAAATGATGGGAAAAATTATTTATTTTATAGGTGGAGCTAGAAGTGGAAAAAGCTCTAAAGCTGAAGGGTATATTTTTGCAAGAAATTATACTAAAAAAATATATGTTGCAACAGGTATAGCTTTTGATGAAGAGATGAAAGCTAGAGTAAAAAAACACCAAGAACAACGAGGCAATAACTGGTTGACAATTGAAGGATATAAAGACCTTGTAGAAAAAATAAAACCTCATGTTGAAGCAGGTGGGGTAATTCTTTTAGATTGTTTAACAAATATGGTAACAAATTTGATGATAATGGATAAAGAGTATGACTGGGATAAAATTTCAGTTGAAGAGGTTGAACAGTTGGAAAAGGAAATTACTGATAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAATTACATTGGTAGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9718-9425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHK010000018.1 Fusobacterium sp. DD4 JD13_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9717 29 100.0 38 ............................. TTACTGAAGAAGTTACTGAAGAGACAGAAGCTCAGGCA 9650 29 96.6 37 .............C............... TCTTGTTAACAAGTAAAGATTACAAGTTGCCATATTA 9584 29 96.6 37 ........T.................... CTACAAAATGGTACTGATAGAGCTTTTGGATGCGTTG 9518 29 100.0 37 ............................. GAAAATGACATTCAAGAAAAAAGTGTTCATGAAAGCG 9452 28 93.1 0 .............C..........-.... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.3 38 TCTTAAAACATCCAATGTTACTATTCAAT # Left flank : TTTATATTCAGAATGCTCTTGTAGAAATATACCTTTAACTAAACTATAAAACAATTTATCATATGTTTTAAACTCTATACTTTCTGAGAATTTTTTATCACAGTACTCTCTATTTTTATCTTTTAGTTCATTTATAATGGAGTTATTATAGCTTAAAAAAAGCACCTTCTTATGTTTATTAAAAAGAGAGCCTGCTTGATCCTCTAAAATCATTTCAGCTCTGGCAAGTCCAACTAGTGTTTTCCCACTTCCTGCTGTCCCTTTTACTATTAAAATCCTTTCACTAGAGCCCACTATTGCAGCCTGTTCTTTTGATAGCTGTATCTTCATTTGACACCTCTTTATAAATGTGACCTGTTTTTCAATTTTATTATCCTCTATCAAGACCATATAATCAATACTTTTTTACTAAAAATTAAGTATTTAATTTTTAATTTCTCATTTTTAGCCATCTAGATATTTAAAATTTTTTCAAAAAATAAAAAAGACCCCTGAAAAGG # Right flank : GGTCAAATAACGACTTGTTATTATTTTATTTTACGTAACTCCCTTTACATCTAAAGTATAACATATTTTTTCCAAGCAATAACAGATTTTGCCTTTATTTCCATAAGTATCAATTTTAGATTAATTCACAAATTATCTATCAGTTCACTTGGAAAATTTACTAATTAAATGTACTACACCCTCCATCTTACTTATCCAAGACTTTAGGTGCAGTACACAAAATTATTTTAATTTACTATTCTTCTACTGGCTCTTTACACTCCTTAAATTTATCTATCACAAAGATATCCATACCATTAGAAACCTGATACTTTCCTTCCAGTTCATATCTTCCACTCTTAATAAGTCTTTTGCAGGCTCCAAAATCTTCATTATCAAGAAGATAAAGATATAAATCTTTTCCACGTACCTTTGCCTGGCAGCCTTTAGTGACAACATAAGCCACTCTGGTAATAACTCCATTATTCTCTTCTCTCTCTTTAACTTTTAGCATCTTATCA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTAAAACATCCAATGTTACTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //