Array 1 743466-744712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ344429.1 Klebsiella pneumoniae strain CF10728 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 743466 28 100.0 33 ............................ CAGACCTCCTCTTCTACCTTGACCGCCCTACAG 743527 28 100.0 33 ............................ TAAAAACCCCGCATTATGCGGGGTTCTCTTTAT 743588 28 100.0 33 ............................ GAGGAAACGGCAAAACTGGATCAGCTTATCCGC 743649 28 100.0 33 ............................ CGCAGCGCGCCGGGCGATCTCCGGCGTGCCCTC 743710 28 100.0 33 ............................ CAGGTTGGCCATATAGGTCAGGAATGTGCCGCT 743771 28 100.0 33 ............................ TCACCAGGATTACTCGGTCCGGACGGCCAGACA 743832 28 100.0 33 ............................ CCCTACCCCGCGGCGCTGCAGGTAATACGCCTG 743893 28 100.0 33 ............................ CGGGCTTGACGCGGTGCATTTTGACGCGGACGC 743954 28 100.0 33 ............................ TTATGTGTGTGGCGCTGGGGAGGATTGATCCGG 744015 28 100.0 33 ............................ CACCGCGACCGAGGCCGTAAAATCGGCCGTGGG 744076 28 100.0 33 ............................ TGGGATCACCTGCAGGACCTGCGCGTCGTCGCC 744137 28 100.0 33 ............................ TCTGACGGGTCAGAATCTGATGCATCAGTTTTT 744198 28 100.0 33 ............................ ATCCTTCTCGCCTACCGGGCGGAAGCAAAAACG 744259 28 100.0 33 ............................ TGCAGATTTCAGCAGAGTTTCGCCGGGTGTTTC 744320 28 100.0 33 ............................ TGTTGAGCAGCGGGCTGTGTTACTCAACATGCT 744381 28 100.0 33 ............................ CTGGTGCCGGTCGCCACTGCTGCGTGTGATAGT 744442 28 100.0 34 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGTG 744504 28 100.0 33 ............................ TTTACAAGGACCGATGAATGAACCCCCTGATCG 744565 28 100.0 33 ............................ CAACTGCGACGCCTGCGAGCATTGCCGCTACTT 744626 27 92.9 33 ........A........-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 744686 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 21 28 98.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGTGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTATGGATTTTTCCGCAGCGTTAACTACGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGGCGCGGGCCGGGGAGGCGAGTAGGGTAGACCGGACCTGGTCAGCAGCAAGACAACGGTGGTGAGATGGGGACATACTTTTTCGTTTGATGAATGTGGTGCTGATGCGGAAACCCTGCGGAGTGCAATTGTCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAACTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATCCATATTCATGTGTTATATTTGTTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAACCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGGCGCTTATAGCGTTGTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 753381-753842 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ344429.1 Klebsiella pneumoniae strain CF10728 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 753381 28 100.0 32 ............................ TACGGGTCCCCGCTGGGCTCCGGCGGCAGCGT C [753408] 753442 28 100.0 33 ............................ TAAGCGTTGATGCGGGAGAAGGTGAGCCGGGGA 753503 28 100.0 33 ............................ CGTAAAAGAGCGGATCGGCTCCTCCGTGCTGAT 753564 28 100.0 33 ............................ TGGTGTACGACACCCGCGATTTACCCGTCAGCC 753625 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 753686 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 753747 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTATCAGCGCTGGCATTCGTTCT 753816 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 8 28 98.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //