Array 1 75920-71667 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQG01000004.1 Halorhabdus sp. H27 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 75919 37 100.0 36 ..................................... AAGGTCAACCAGTATGATTGGAGTAACCTCGTTACC 75846 37 100.0 36 ..................................... TTCGATCGTCTGTTCGCGCACCTTGCAGTCAGGCAT 75773 37 100.0 38 ..................................... AAGACCGGAGAAGTGATCGAGAAGTCGCCCACCTTGAG 75698 37 100.0 36 ..................................... TTGCGTCGAGTTGGAGGTCTTTCGCCCGATCCTCCG 75625 37 100.0 36 ..................................... AGGTGGATGTTAATGGGGTAAGCGCGGCTATATCAA 75552 37 100.0 37 ..................................... GCCAGTCTGTCGGACGATCTCGTCAAGGGAGAGCTCG 75478 37 100.0 36 ..................................... GATGCCTGACGACACCGACCGCGAGACGGACTCGGA 75405 37 100.0 36 ..................................... GATCCTCATCCTGTGGGCGGGCGGGGCGCTGGCCTT 75332 37 100.0 37 ..................................... AAGACCTCCAACTCGACGCAACGCCCGCTGACAGGAT 75258 37 100.0 36 ..................................... CGTGAGTACGAACGCGAGGGCGACGGCTACCGCGTC 75185 37 100.0 36 ..................................... ACGATAACGTGCTCCGGTCGAACGACGTTGTGACCG 75112 37 100.0 35 ..................................... ACGGAAGCGACGGGGTACCGACTTGTCCTCGACAA 75040 37 100.0 36 ..................................... ACATCGCCGGTGACGCTGACGGGCTTGCTCGGCGCG 74967 37 100.0 36 ..................................... CTGTCGGTGTCGTTGCGCTCAGACATCGACCGACAC 74894 37 100.0 36 ..................................... ATCATATCTCGGCCCTCATGGCGTCCCACTTCTGGG 74821 37 100.0 37 ..................................... ACGTCGTCGACGAACCGTTCCCACACCCAGTTGCGCC 74747 37 100.0 32 ..................................... AACACGAGGTCATGGAAGTTGGTATCCGTCAG 74678 37 100.0 37 ..................................... ACGCCCATGCGTTCGGTTCGCGTCGGATCGGCCGACG 74604 37 100.0 36 ..................................... GTCCTGCACCCGGCCGACCCACTGTTCGGCGATCTC 74531 37 100.0 34 ..................................... CATCAAGGACGAGCTCGGAGTCGTCGAGTGTCGC 74460 37 100.0 36 ..................................... GGAGATCGGCACATCCTCGGGCGGCACGCTGTCGGG 74387 37 100.0 35 ..................................... CTGACGACGAGTCAGTCGGTCGTCAAAGATTCGAC 74315 37 100.0 37 ..................................... GGTGGGTGCATATCGTCCGGTACAACTACGGGGTGAT 74241 37 100.0 36 ..................................... TCATCCGTGTCGCCCGACGCCGAAACGACGAGTTCC 74168 37 100.0 36 ..................................... GCGGGGATGCCAACGCCCCGGACACGCCGTCGACGA 74095 37 100.0 35 ..................................... ATCGACGGCGGTGATTTGACATGAGCAACACCGAG 74023 37 100.0 37 ..................................... TCGAGTCAGATCCAAGCAGCAAGGTTTTTATCTCTCG 73949 37 100.0 35 ..................................... TCGCCGATTGATCGCGTCGACACGAACGTCACGCT 73877 37 100.0 35 ..................................... AGTCAGCCGCTTGGCGATGGACGTCTTCGACTCGT 73805 37 100.0 37 ..................................... TCGACGTTGGCGTCAGCCCCCCGTTCGTAGTTCTCGC 73731 37 100.0 36 ..................................... TGGGTGGGGACCTCGAGGAGGGAGAGCGTCTCGGCG 73658 37 100.0 35 ..................................... ACGGTCAACGAGACCGAGCGACAGTGGCTCGTCCT 73586 37 100.0 33 ..................................... AAGCCCGGGCGGATCGTCCGACCCACAAACACC 73516 37 100.0 35 ..................................... GTCGACCTGCTGCTGCTGGCCGGTATCATCCACGC 73444 37 100.0 37 ..................................... CTGTAGAGCGCGACGTCGCTGTAGCCTGCGATGTCGA 73370 37 100.0 37 ..................................... AGGCCGCCGAGGAGCTCGCCGTCGACGACGTTTACCC 73296 37 100.0 35 ..................................... GGGAAGACATTCGTGGGAGTTCTCCGATCCCTCCT 73224 37 100.0 34 ..................................... TGGTCGACGGCGTCTGAGCGCCGTCGGCCGTCTT 73153 37 100.0 34 ..................................... CAGTCTCTTAGAGCGGATATTCAGTTAGACATGG 73082 37 100.0 35 ..................................... CCGCTGCCGTCCGTTCTGTCGGCCAGCCCGCGGTC 73010 37 100.0 37 ..................................... AGGTGAGTGGCGCACCGCGTCGCTGGTGAGTCAGCGG 72936 37 100.0 35 ..................................... CGGTACGTCTTGGTTCCTGTCGCTGCTTTGTCCCC 72864 37 100.0 36 ..................................... GGCAGACCGTGGACGATAGTGAACGGGTGTGGTACG 72791 37 100.0 36 ..................................... GGAAGTGCCGGGATATCGAGCGAGAGCAGGCAATCA 72718 37 100.0 35 ..................................... ACGTCCGCTGGCAGGACCTCATGAAAACCAGCGTC 72646 37 100.0 36 ..................................... ACGTGACCGTGCCGTTGGTGAACAAGACCGTCGACG 72573 37 100.0 37 ..................................... TCGATCGCCTCGGCGTCGCCAAATCCGATCGTCACCT 72499 37 100.0 33 ..................................... TTGCCCGAGATCGTCGTCGACGCGTACTCGATC 72429 37 100.0 34 ..................................... GCCGTGATGCTCACCACACCCCAAAGCGTCGAGG 72358 37 100.0 36 ..................................... TCGGCGAGCTGACGAAAGTCGGGCCAACCGGCTACT 72285 37 100.0 36 ..................................... AGCTGGAGATCCGGCCCGACGACTTCGACCTGGAGG 72212 37 100.0 34 ..................................... TAACTCTGTTCGGCCTCGGGATCCTCGCGACCGG 72141 37 100.0 38 ..................................... CAAGTCCTCGATGTCTCTAGTCTCAGTCCCTTCTTCTC 72066 37 100.0 36 ..................................... CCGATGCAACGGCTGACTGACGTTCCAAATCCAGTC 71993 37 100.0 34 ..................................... TTGAAGACGACCCCCGTCCCCGCTTCTAAGTCGG 71922 37 100.0 36 ..................................... AGACTGTGACGGCATCTGAACCAGGGTTTTGGTCCG 71849 37 100.0 36 ..................................... AAGCGGGTCAGTGCGAGGACGGGGTCGGTCCAGATG 71776 37 100.0 37 ..................................... GATGACGATCGAGCCTCTACTGTTGTCGTAGACGACC 71702 36 70.3 0 ....G..C..GG.........AG..T..A...-..TG | ========== ====== ====== ====== ===================================== ====================================== ================== 59 37 99.5 36 GTCGCAGGAGTCAGAAAACCCGAACCGGGATTGAAAC # Left flank : GTACTTCGAGTACAAAGTGACGCGTCGGAAAGCCGTCCGCCAGCAGGCGATACTATTGCGAAAGGCGATCACGAACGAACTCGACGAATACCACGCCCTTGCGTTCGATCGCTAACCATGCGCCTGGCAATCGCCTACGACGTGAGCGAGGACGCCAATCGCCGGCAGGTCTACCGAACGCTCCAGAAGTACGGAGCCTGGAAGCAGTACAGCGTGTTCGAACTGGAGGTGAACAAAACCGAACGTGTCGAGCTGGAGGATGAGTTGGAGAAACACATCGATCCGGATGACGGAGATCGGATTCGGATCTACCGACTCTGTGAGTCCTGCCTCGACGATATCTCGAATCTCGGTGCGGACCAACCCGACGAGCAGTCCAACGTACTCTGAGTTTCGTGGACCTTTTTGAACTCTCTGTACAGCCCCCATCGACGAACTGACTGACGATATTCGCGCCCGGAGGAAGATTTATTGCCCCTCTCGCCGGATTTTCACCCCCT # Right flank : TTGCTTGCTATCTGGCGTATGGATCTGACTAGTTCTTTCCAATACTTTGATTAGCACTTCTCCACATTATCTGGCTGGAACCCCCCTCAGGAAGCCGAACCCGTTCACGGACTGAACGGATTCGTCCGTCGAGACCCCCGATTTGACCGGCGAAGGAACGACCCAATCACCGATAATAAGCATTGAACGCCACGAAAACGGCGTAATTACGAATCGTGCAGAAGGTGAGTGGGTCCGGGCGGATTTGAACCACAGTCGCTCCCGTTCGATCACTACGCTCGCTCACCTCTCGCTCCTCGCTTCAAATCCACCCGCCGCTTCGCATACGCGGCGCTCGTAAGTGAGCGCCGCGAAAACTCAGTGGGTCCGGGCGGATTTGAACCACCGACCTCGGCCTTGTAAAGGCCACGTCATAACCAACCTAGACCACGGACCCGCCACATCCACCTTCCCTACCGGACGGAATAACCCTTACTTTCTCACCCGAACGCTTTCACCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGAGTCAGAAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 2 86455-89629 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQG01000004.1 Halorhabdus sp. H27 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 86455 37 100.0 37 ..................................... TCACCTTGCGGGTTGCCCGTTCCATCGCCGAACTGAC 86529 37 100.0 36 ..................................... ATCGACGCCGTCGAGTCCATGACGGACGCCCTCGGC 86602 37 100.0 37 ..................................... ACGTTGATCGCCGATTTCGCGTCTTCGCTATCGACGC 86676 37 100.0 36 ..................................... GAGGTGACGGAGGTGGCGGACGGAGCGGGGGAGTCC 86749 37 100.0 36 ..................................... GAGGTGACGGCGAATGAGTGACGAGAACCTCGGCGC 86822 37 100.0 38 ..................................... CAGAAGCGGGTCGGCGTCACCGTCGACGAACCCGAGCA 86897 37 100.0 37 ..................................... GTCGCCGATGCGTTCGGCGAGGCGGTCGACCTCGGCG 86971 37 100.0 36 ..................................... GCCGCCGAAGACGATACCGACTACTCGGCCGTGGCC 87044 37 100.0 37 ..................................... GTGTGAACGCTGACATGTTGGAAGGGGATCACTACAT 87118 37 100.0 36 ..................................... TCGTCGAGCTGCTCGCGAAGGGTCTCGACCGCTGCG 87191 37 100.0 36 ..................................... TGGAACTCACCGTCGAAGGGCGCTACGTCCCGCGAG 87264 37 100.0 37 ..................................... TTGCGGCCGTGATCCAGAAAGACGCCGATGTCGCCCC 87338 37 100.0 34 ..................................... GCTATTCGTGTATCTGCTGGCAGGTTATACAATC 87409 37 100.0 34 ..................................... TTGTAGGTTTTCCCGTCCGGCGTTTCCACGGTTG 87480 37 100.0 34 ..................................... ATCTAAACGTTCCATCAACGCTTCTGTATCAACC 87551 37 100.0 37 ..................................... TTGCACCCTTCCCAGAGGCTTTGACACTCTTGGGTGC 87625 37 100.0 36 ..................................... AGGAGATCGCCCGTGCTGTCCCCGCCCTCTTGCCCG 87698 37 100.0 34 ..................................... AGCGCTCAAGGAGGTCGGTCGGAAGCATCGCCTG 87769 37 100.0 35 ..................................... AATAATGGGCCGTGTGACCGTTCTCGGCCGGTCCG 87841 37 100.0 36 ..................................... GCGTCGATCAGCTCCCAGCCGTTGACGGGATCGGGC 87914 37 100.0 37 ..................................... ACAACTACGAGACCGCAACTGAAGGATCGGACTACGA 87988 37 100.0 36 ..................................... TACATCGTCGCCGAAGACGTCCCGTACCCGGACCAC 88061 37 100.0 37 ..................................... CGGATTCGGTTGTACGGAGTCGATACTGAGTCGCAAG 88135 37 100.0 36 ..................................... GAACAGACAGCCTGGTCTATTGCTATGAGCCATAAC 88208 37 100.0 36 ..................................... TGCTCCCGAGCGTCGTGATGGAGTGGGGTGGCTGGG 88281 37 100.0 36 ..................................... CGGGAGACCGCCCCCTAATGCGTCCTCCTCGATGAC 88354 37 100.0 35 ..................................... AAACGGGTAGTTCGACATATACTGATACGGACGAT 88426 37 100.0 35 ..................................... TTTTCCGACGCGTTCACGACTGACGACGCACTCGG 88498 37 100.0 37 ..................................... AATAGCGACTTGTCGCCTTCTTCGTCTTGCCATTCTG 88572 37 100.0 36 ..................................... GAGTTTTTCGAGGAGTGGCCTGAGGATGAGTCGAAA 88645 37 100.0 36 ..................................... ATCCGGTCGGGTACTGGTGCGATTACTGCGGTGAAT 88718 37 100.0 36 ..................................... ATCCGGTCGGGTACTGGTGCGATTACTGCGGTGAAT 88791 37 100.0 35 ..................................... TGGATAGCGTTTGCCAGAGAGAACGTCAATCCAGT 88863 37 100.0 35 ..................................... TGGATAGCGTTTGCCAGAGAGAACGTCAATCCAGT 88935 37 100.0 35 ..................................... ATGATGAATGGATTCGCTTTCAGCAAGAGAAACAT 89007 37 100.0 37 ..................................... ACCGGCTACGCCGACCCGTCGGATGCGAACGCCTGGA 89081 37 100.0 35 ..................................... CCCATCGCCATTGTTGTTGATGACTGATGCGGCGT 89153 37 100.0 36 ..................................... TACGTGTTCCCGTCAGTCGTCGTGACGGTCTGGCCC 89226 37 100.0 36 ..................................... AGTACACCTACGACATCGACGTCCTGTGTATCTACG 89299 37 100.0 37 ..................................... AGCGGTCGTGGGAAAATGGTAGTGGACGACGGCTCTG 89373 37 100.0 36 ..................................... ACAGTGCGGACACTCCAACCGACAGAACTCGTCGAG 89446 37 100.0 38 ..................................... AGTTGATCGCTAGCCATTTCTTCCGGCATGGCGACGAC 89521 37 100.0 35 ..................................... GTGGGCCTCTGCATCGCTCTGATGCTCGTCTGAAT 89593 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 44 37 100.0 36 GTCGAAGCAGGGAGAAAACCCAGGACGGGATTGAAAC # Left flank : CGTTAACTTCGGTGGAGGCGCACGCGAGGTACTGCTTCCGTTGTTGATCGCGACAGTACTCCATGCGCCGATCGTTGATCAAGCGTTCCAGTACACAGACGTTGACCAGGAGGTGGAGACGGTCCCGATCCCGAATTTGACGACACAGATTCCCTCGAGTGCCGTCGATACGTTCGAGTTGCTGGTCCATCTCGATCGTGAAATGGCGCTGCCGGAACTGGCTACAGAGAGCGACAAGAGCAAGAGCACGGTCAGTCGACACGTGGAGTCGCTGGCCGAAGCTGGCGTGTTTGAAACTTGGCTGGAGGACAACGCGAAGTACGTCTCATTGTCACAGACTGGTGTATTGATCGCCCGTGCCTGCCCAAGTGAGGACTTGACTGCTCTGTAGTTTCGTAGACCTTTATCAAATGGCTGTATAGCCCCGGTCGACGAACGACCACCACAAAATGACGTCACCACAAAGATTTATTGCCTCTCTCGCCGGATTTTCACCCCCA # Right flank : CGTCACAATTCAGGCATACGAGCGCCGCGTATGCGAAGCGGCGGGTGGATTTGAACCCTGGAAGTCACAGCCCGCGCAGCCGAGTGAAACGAGGCGAGCAGGAATGTCTTCAGCCGGTTCAAAGCCGGTCCAGCCGACCCTGTCGAACGGTCCACTCACCGCCGTCTAGGAGTTCCTCGAGCATCGGCCGTAGGTCGGCGCCAGCGACGCCGAAGAACTTCTCGCGACCGACGGGGGTCCGGAAACGGACAATATAGGTGTAGTCGGTCGCCTCAAAGACGGAAAGCGACGCATTGGCACCCTGATTATGTACGTCCAGCTGTGGCGGCGCGTCCCCGCCAGTGACGCGCGATCCCAGCCCCCAGCTCAGCGATTCGATCGCCGCCCGATCGATCGGCAACACGTCGGTGAGGTGGCCATCCTGTCCCGATCCGTGCTCGCCCGGCCCCGTCTCACGGGATGACATGTCCACCCGTACGACACCGACACCCAAAAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCAGGGAGAAAACCCAGGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //